MELO3C029448.2 (gene) Melon (DHL92) v3.6.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C029448.2
Type	gene
Organism	Cucumis melo (Melon (DHL92) v3.6.1)
Description	Orf108a
Location	chr02 : 16426944 .. 16427097 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ACGGCTACCTTGTTACGACTTCACCCCAGTCGAAGACCCCACCGTGGTATGCGCCAATAAGACCACCAAAAGCCTTTGTGGCACTAGAGGTACATGGAAGTCATGGTTGATAATTGGTTCGATGCTTCGGGCGAAACCCATTCCCAGGGTTTAA

mRNA sequence

ACGGCTACCTTGTTACGACTTCACCCCAGTCGAAGACCCCACCGTGGTATGCGCCAATAAGACCACCAAAAGCCTTTGTGGCACTAGAGGTACATGGAAGTCATGGTTGATAATTGGTTCGATGCTTCGGGCGAAACCCATTCCCAGGGTTTAA

Coding sequence (CDS)

CGGCTACCTTGTTACGACTTCACCCCAGTCGAAGACCCCACCGTGGTATGCGCCAATAAGACCACCAAAAGCCTTTGTGGCACTAGAGGTACATGGAAGTCATGGTTGATAATTGGTTCGATGCTTCGGGCGAAACCCATTCCCAGGGTTTAA

Protein sequence

RLPCYDFTPVEDPTVVCANKTTKSLCGTRGTWKSWLIIGSMLRAKPIPRV

Homology

[Close]

BLAST of MELO3C029448.2 vs. NCBI nr
Match: AHJ81032.1 (orf108a (mitochondrion) [Panax ginseng])

HSP 1 Score: 102.4 bits (254), Expect = 4.4e-19
Identity = 46/50 (92.00%), Postives = 47/50 (94.00%), Query Frame = 0


Query: 1  RLPCYDFTPVEDPTVVCANKTTKSLCGTRGTWKSWLIIGSMLRAKPIPRV 51
          RLPCYDFTPVEDPTVVCANKTTKSLCGT GT KSW+IIG MLRAKPIPRV
Sbjct: 48 RLPCYDFTPVEDPTVVCANKTTKSLCGTSGTQKSWVIIGPMLRAKPIPRV 97

[Close]

BLAST of MELO3C029448.2 vs. NCBI nr
Match: KZM80272.1 (hypothetical protein DCAR_032051 [Daucus carota subsp. sativus])

HSP 1 Score: 102.4 bits (254), Expect = 4.4e-19
Identity = 46/50 (92.00%), Postives = 47/50 (94.00%), Query Frame = 0


Query: 1  RLPCYDFTPVEDPTVVCANKTTKSLCGTRGTWKSWLIIGSMLRAKPIPRV 51
          RLPCYDFTPVEDPTVVCANKTTKSLCGT GT KSW+IIG MLRAKPIPRV
Sbjct: 46 RLPCYDFTPVEDPTVVCANKTTKSLCGTSGTQKSWVIIGPMLRAKPIPRV 95

[Close]

BLAST of MELO3C029448.2 vs. NCBI nr
Match: YP_009049805.1 (hypothetical protein (mitochondrion) [Capsicum annuum] >AIG89814.1 hypothetical protein (mitochondrion) [Capsicum annuum] >AIG90163.1 hypothetical protein (mitochondrion) [Capsicum annuum] >ATW72840.1 orf108 (mitochondrion) [Solanum commersonii] >ATW72867.1 orf108 (mitochondrion) [Solanum commersonii] >ATW72884.1 orf108 (mitochondrion) [Solanum commersonii] >AUS83309.1 hypothetical protein (mitochondrion) [Solanum tuberosum] >AUS83328.1 hypothetical protein (mitochondrion) [Solanum tuberosum] >AUS83356.1 hypothetical protein (mitochondrion) [Solanum tuberosum] >AUS83375.1 hypothetical protein (mitochondrion) [Solanum tuberosum] >AUS83432.1 hypothetical protein (mitochondrion) [Solanum tuberosum] >AUS83474.1 hypothetical protein (mitochondrion) [Solanum tuberosum])

HSP 1 Score: 95.1 bits (235), Expect = 7.1e-17
Identity = 43/50 (86.00%), Postives = 44/50 (88.00%), Query Frame = 0


Query: 1   RLPCYDFTPVEDPTVVCANKTTKSLCGTRGTWKSWLIIGSMLRAKPIPRV 51
           RLPCYDFTPVEDPTVVCANKTTK LCGT    KSW+IIG MLRAKPIPRV
Sbjct: 59  RLPCYDFTPVEDPTVVCANKTTKGLCGTSVPQKSWVIIGPMLRAKPIPRV 108

[Close]

BLAST of MELO3C029448.2 vs. NCBI nr
Match: OIT00793.1 (hypothetical protein A4A49_33372 [Nicotiana attenuata])

HSP 1 Score: 95.1 bits (235), Expect = 7.1e-17
Identity = 43/50 (86.00%), Postives = 44/50 (88.00%), Query Frame = 0


Query: 1   RLPCYDFTPVEDPTVVCANKTTKSLCGTRGTWKSWLIIGSMLRAKPIPRV 51
           RLPCYDFTPVEDPTVVCANKTTK LCGT    KSW+IIG MLRAKPIPRV
Sbjct: 59  RLPCYDFTPVEDPTVVCANKTTKGLCGTSVPQKSWVIIGPMLRAKPIPRV 108

[Close]

BLAST of MELO3C029448.2 vs. NCBI nr
Match: OIT19514.1 (hypothetical protein A4A49_65465 [Nicotiana attenuata] >OIT36957.1 hypothetical protein A4A49_60502 [Nicotiana attenuata])

HSP 1 Score: 95.1 bits (235), Expect = 7.1e-17
Identity = 43/50 (86.00%), Postives = 44/50 (88.00%), Query Frame = 0


Query: 1   RLPCYDFTPVEDPTVVCANKTTKSLCGTRGTWKSWLIIGSMLRAKPIPRV 51
           RLPCYDFTPVEDPTVVCANKTTK LCGT    KSW+IIG MLRAKPIPRV
Sbjct: 59  RLPCYDFTPVEDPTVVCANKTTKGLCGTSVPQKSWVIIGPMLRAKPIPRV 108

[Close]

BLAST of MELO3C029448.2 vs. TrEMBL
Match: tr|A0A175YBT7|A0A175YBT7_DAUCA (Uncharacterized protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_032051 PE=4 SV=1)

HSP 1 Score: 102.4 bits (254), Expect = 2.9e-19
Identity = 46/50 (92.00%), Postives = 47/50 (94.00%), Query Frame = 0


Query: 1  RLPCYDFTPVEDPTVVCANKTTKSLCGTRGTWKSWLIIGSMLRAKPIPRV 51
          RLPCYDFTPVEDPTVVCANKTTKSLCGT GT KSW+IIG MLRAKPIPRV
Sbjct: 46 RLPCYDFTPVEDPTVVCANKTTKSLCGTSGTQKSWVIIGPMLRAKPIPRV 95

[Close]

BLAST of MELO3C029448.2 vs. TrEMBL
Match: tr|A0A096XFC7|A0A096XFC7_PANGI (Orf108a OS=Panax ginseng OX=4054 GN=orf108a PE=4 SV=1)

HSP 1 Score: 102.4 bits (254), Expect = 2.9e-19
Identity = 46/50 (92.00%), Postives = 47/50 (94.00%), Query Frame = 0


Query: 1  RLPCYDFTPVEDPTVVCANKTTKSLCGTRGTWKSWLIIGSMLRAKPIPRV 51
          RLPCYDFTPVEDPTVVCANKTTKSLCGT GT KSW+IIG MLRAKPIPRV
Sbjct: 48 RLPCYDFTPVEDPTVVCANKTTKSLCGTSGTQKSWVIIGPMLRAKPIPRV 97

[Close]

BLAST of MELO3C029448.2 vs. TrEMBL
Match: tr|A0A287GXX7|A0A287GXX7_HORVV (Uncharacterized protein OS=Hordeum vulgare subsp. vulgare OX=112509 PE=4 SV=1)

HSP 1 Score: 98.2 bits (243), Expect = 5.5e-18
Identity = 44/50 (88.00%), Postives = 45/50 (90.00%), Query Frame = 0


Query: 1  RLPCYDFTPVEDPTVVCANKTTKSLCGTRGTWKSWLIIGSMLRAKPIPRV 51
          RLPCYDFTPVEDPTVVCANKTTK LCGT  T KSW+IIG MLRAKPIPRV
Sbjct: 10 RLPCYDFTPVEDPTVVCANKTTKGLCGTSDTQKSWVIIGPMLRAKPIPRV 59

[Close]

BLAST of MELO3C029448.2 vs. TrEMBL
Match: tr|A0A075VTL5|A0A075VTL5_CAPAN (Uncharacterized protein OS=Capsicum annuum OX=4072 GN=orf108e PE=4 SV=1)

HSP 1 Score: 95.1 bits (235), Expect = 4.7e-17
Identity = 43/50 (86.00%), Postives = 44/50 (88.00%), Query Frame = 0


Query: 1   RLPCYDFTPVEDPTVVCANKTTKSLCGTRGTWKSWLIIGSMLRAKPIPRV 51
           RLPCYDFTPVEDPTVVCANKTTK LCGT    KSW+IIG MLRAKPIPRV
Sbjct: 59  RLPCYDFTPVEDPTVVCANKTTKGLCGTSVPQKSWVIIGPMLRAKPIPRV 108

[Close]

BLAST of MELO3C029448.2 vs. TrEMBL
Match: tr|Q5MA28|Q5MA28_TOBAC (Uncharacterized protein OS=Nicotiana tabacum OX=4097 GN=orf108 PE=4 SV=1)

HSP 1 Score: 95.1 bits (235), Expect = 4.7e-17
Identity = 43/50 (86.00%), Postives = 44/50 (88.00%), Query Frame = 0


Query: 1   RLPCYDFTPVEDPTVVCANKTTKSLCGTRGTWKSWLIIGSMLRAKPIPRV 51
           RLPCYDFTPVEDPTVVCANKTTK LCGT    KSW+IIG MLRAKPIPRV
Sbjct: 59  RLPCYDFTPVEDPTVVCANKTTKGLCGTSVPQKSWVIIGPMLRAKPIPRV 108

The following BLAST results are available for this feature:

BLAST of MELO3C029448.2 vs. NCBI nr


Match Name	E-value	Identity	Description
AHJ81032.1	4.4e-19	92.00	orf108a (mitochondrion) [Panax ginseng]	[more]
KZM80272.1	4.4e-19	92.00	hypothetical protein DCAR_032051 [Daucus carota subsp. sativus]	[more]
YP_009049805.1	7.1e-17	86.00	hypothetical protein (mitochondrion) [Capsicum annuum] >AIG89814.1 hypothetical ...	[more]
OIT00793.1	7.1e-17	86.00	hypothetical protein A4A49_33372 [Nicotiana attenuata]	[more]
OIT19514.1	7.1e-17	86.00	hypothetical protein A4A49_65465 [Nicotiana attenuata] >OIT36957.1 hypothetical ...	[more]

BLAST of MELO3C029448.2 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of MELO3C029448.2 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of MELO3C029448.2 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A175YBT7\|A0A175YBT7_DAUCA	2.9e-19	92.00	Uncharacterized protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_032051 ...	[more]
tr\|A0A096XFC7\|A0A096XFC7_PANGI	2.9e-19	92.00	Orf108a OS=Panax ginseng OX=4054 GN=orf108a PE=4 SV=1	[more]
tr\|A0A287GXX7\|A0A287GXX7_HORVV	5.5e-18	88.00	Uncharacterized protein OS=Hordeum vulgare subsp. vulgare OX=112509 PE=4 SV=1	[more]
tr\|A0A075VTL5\|A0A075VTL5_CAPAN	4.7e-17	86.00	Uncharacterized protein OS=Capsicum annuum OX=4072 GN=orf108e PE=4 SV=1	[more]
tr\|Q5MA28\|Q5MA28_TOBAC	4.7e-17	86.00	Uncharacterized protein OS=Nicotiana tabacum OX=4097 GN=orf108 PE=4 SV=1	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005739	mitochondrion
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C029448.2.1	MELO3C029448.2.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
MELO3C029448.2	Watermelon (97103) v2	medwmbB242
MELO3C029448.2	Watermelon (97103) v2	medwmbB251
MELO3C029448.2	Wax gourd	medwgoB290
MELO3C029448.2	Cucumber (Gy14) v2	cgybmedB045
MELO3C029448.2	Cucurbita maxima (Rimu)	cmamedB023
MELO3C029448.2	Cucurbita maxima (Rimu)	cmamedB060
MELO3C029448.2	Cucurbita maxima (Rimu)	cmamedB112
MELO3C029448.2	Cucurbita maxima (Rimu)	cmamedB469
MELO3C029448.2	Cucurbita moschata (Rifu)	cmomedB011
MELO3C029448.2	Cucurbita moschata (Rifu)	cmomedB052
MELO3C029448.2	Cucurbita moschata (Rifu)	cmomedB105
MELO3C029448.2	Cucurbita pepo (Zucchini)	cpemedB392
MELO3C029448.2	Cucurbita pepo (Zucchini)	cpemedB604
MELO3C029448.2	Cucurbita pepo (Zucchini)	cpemedB734
MELO3C029448.2	Cucurbita pepo (Zucchini)	cpemedB851
MELO3C029448.2	Wild cucumber (PI 183967)	cpimedB042
MELO3C029448.2	Cucumber (Chinese Long) v2	cumedB038
MELO3C029448.2	Bottle gourd (USVL1VR-Ls)	lsimedB309
MELO3C029448.2	Bottle gourd (USVL1VR-Ls)	lsimedB425
MELO3C029448.2	Watermelon (Charleston Gray)	medwcgB242
MELO3C029448.2	Watermelon (Charleston Gray)	medwcgB249
MELO3C029448.2	Watermelon (97103) v1	medwmB268
MELO3C029448.2	Watermelon (97103) v1	medwmB288
MELO3C029448.2	Silver-seed gourd	carmedB0135
MELO3C029448.2	Silver-seed gourd	carmedB0636
MELO3C029448.2	Silver-seed gourd	carmedB0675
MELO3C029448.2	Cucumber (Chinese Long) v3	cucmedB052