MELO3C029435.2 (gene) Melon (DHL92) v3.6.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C029435.2
Type	gene
Organism	Cucumis melo (Melon (DHL92) v3.6.1)
Description	OTU domain-containing protein
Location	chr02 : 14338320 .. 14338518 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TAGGTATATTGAAGGAGATTTTGATGCGTATGTGAAGCAAATTCAGCAACCTTTCGTGTGGGGTGGAGAACCTGAGTTACTTATGGCATCTCATATTCTGAAGTAAGTTTTCATTTATATTGCTAACCACAATTTTGTCTCATGAGTTTATATAAAAATTTATCCAAAAAAAAAAAGAGAAAGTAATAAACAAAATGCT

mRNA sequence

TAGGTATATTGAAGGAGATTTTGATGCGTATGTGAAGCAAATTCAGCAACCTTTCGTGTGGGGTGGAGAACCTGAGTTACTTATGGCATCTCATATTCTGAAGTAAGTTTTCATTTATATTGCTAACCACAATTTTGTCTCATGAGTTTATATAAAAATTTATCCAAAAAAAAAAAGAGAAAGTAATAAACAAAATGCT

Coding sequence (CDS)

AGGTATATTGAAGGAGATTTTGATGCGTATGTGAAGCAAATTCAGCAACCTTTCGTGTGGGGTGGAGAACCTGAGTTACTTATGGCATCTCATATTCTGAAGTAA

Protein sequence

RYIEGDFDAYVKQIQQPFVWGGEPELLMASHILK

Homology

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BLAST of MELO3C029435.2 vs. NCBI nr
Match: XP_004142455.1 (PREDICTED: OTU domain-containing protein At3g57810-like [Cucumis sativus] >KGN52210.1 hypothetical protein Csa_5G615810 [Cucumis sativus])

HSP 1 Score: 73.2 bits (178), Expect = 2.0e-10
Identity = 31/33 (93.94%), Postives = 33/33 (100.00%), Query Frame = 0


Query: 2   YIEGDFDAYVKQIQQPFVWGGEPELLMASHILK 35
           YIEGDFDAYVK+IQQPFVWGGEPELLMASH+LK
Sbjct: 222 YIEGDFDAYVKRIQQPFVWGGEPELLMASHVLK 254

[Close]

BLAST of MELO3C029435.2 vs. NCBI nr
Match: XP_016900257.1 (PREDICTED: OTU domain-containing protein At3g57810-like [Cucumis melo])

HSP 1 Score: 73.2 bits (178), Expect = 2.0e-10
Identity = 31/33 (93.94%), Postives = 33/33 (100.00%), Query Frame = 0


Query: 2   YIEGDFDAYVKQIQQPFVWGGEPELLMASHILK 35
           YIEGDFDAYVK+IQQPFVWGGEPELLMASH+LK
Sbjct: 222 YIEGDFDAYVKRIQQPFVWGGEPELLMASHVLK 254

[Close]

BLAST of MELO3C029435.2 vs. NCBI nr
Match: XP_022139298.1 (OTU domain-containing protein At3g57810-like [Momordica charantia])

HSP 1 Score: 73.2 bits (178), Expect = 2.0e-10
Identity = 31/33 (93.94%), Postives = 33/33 (100.00%), Query Frame = 0


Query: 2   YIEGDFDAYVKQIQQPFVWGGEPELLMASHILK 35
           YIEGDFDAYVK+IQQPFVWGGEPELLMASH+LK
Sbjct: 222 YIEGDFDAYVKRIQQPFVWGGEPELLMASHVLK 254

[Close]

BLAST of MELO3C029435.2 vs. NCBI nr
Match: XP_017647111.1 (PREDICTED: uncharacterized protein LOC108487313 [Gossypium arboreum] >KHG26701.1 hypothetical protein F383_04817 [Gossypium arboreum])

HSP 1 Score: 72.4 bits (176), Expect = 3.3e-10
Identity = 30/33 (90.91%), Postives = 33/33 (100.00%), Query Frame = 0


Query: 2   YIEGDFDAYVKQIQQPFVWGGEPELLMASHILK 35
           YIEGDFDAYVK+IQQP+VWGGEPELLMASH+LK
Sbjct: 231 YIEGDFDAYVKEIQQPYVWGGEPELLMASHVLK 263

[Close]

BLAST of MELO3C029435.2 vs. NCBI nr
Match: XP_016676961.1 (PREDICTED: OTU domain-containing protein At3g57810-like [Gossypium hirsutum])

HSP 1 Score: 72.4 bits (176), Expect = 3.3e-10
Identity = 30/33 (90.91%), Postives = 33/33 (100.00%), Query Frame = 0


Query: 2   YIEGDFDAYVKQIQQPFVWGGEPELLMASHILK 35
           YIEGDFDAYVK+IQQP+VWGGEPELLMASH+LK
Sbjct: 231 YIEGDFDAYVKEIQQPYVWGGEPELLMASHVLK 263

[Close]

BLAST of MELO3C029435.2 vs. TAIR10
Match: AT3G57810.2 (Cysteine proteinases superfamily protein)

HSP 1 Score: 60.8 bits (146), Expect = 1.8e-10
Identity = 23/33 (69.70%), Postives = 29/33 (87.88%), Query Frame = 0


Query: 2   YIEGDFDAYVKQIQQPFVWGGEPELLMASHILK 35
           ++EGDFD YV+QI+ P VWGGEPEL MASH+L+
Sbjct: 227 FVEGDFDTYVRQIRDPHVWGGEPELFMASHVLQ 259

[Close]

BLAST of MELO3C029435.2 vs. Swiss-Prot
Match: sp|Q8LBZ4|OTU_ARATH (OTU domain-containing protein At3g57810 OS=Arabidopsis thaliana OX=3702 GN=At3g57810 PE=2 SV=1)

HSP 1 Score: 60.8 bits (146), Expect = 3.3e-09
Identity = 23/33 (69.70%), Postives = 29/33 (87.88%), Query Frame = 0


Query: 2   YIEGDFDAYVKQIQQPFVWGGEPELLMASHILK 35
           ++EGDFD YV+QI+ P VWGGEPEL MASH+L+
Sbjct: 227 FVEGDFDTYVRQIRDPHVWGGEPELFMASHVLQ 259

[Close]

BLAST of MELO3C029435.2 vs. TrEMBL
Match: tr|A0A1S4DW93|A0A1S4DW93_CUCME (OTU domain-containing protein At3g57810-like OS=Cucumis melo OX=3656 GN=LOC103489409 PE=4 SV=1)

HSP 1 Score: 73.2 bits (178), Expect = 1.3e-10
Identity = 31/33 (93.94%), Postives = 33/33 (100.00%), Query Frame = 0


Query: 2   YIEGDFDAYVKQIQQPFVWGGEPELLMASHILK 35
           YIEGDFDAYVK+IQQPFVWGGEPELLMASH+LK
Sbjct: 222 YIEGDFDAYVKRIQQPFVWGGEPELLMASHVLK 254

[Close]

BLAST of MELO3C029435.2 vs. TrEMBL
Match: tr|A0A0A0KRE9|A0A0A0KRE9_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G615810 PE=4 SV=1)

HSP 1 Score: 73.2 bits (178), Expect = 1.3e-10
Identity = 31/33 (93.94%), Postives = 33/33 (100.00%), Query Frame = 0


Query: 2   YIEGDFDAYVKQIQQPFVWGGEPELLMASHILK 35
           YIEGDFDAYVK+IQQPFVWGGEPELLMASH+LK
Sbjct: 222 YIEGDFDAYVKRIQQPFVWGGEPELLMASHVLK 254

[Close]

BLAST of MELO3C029435.2 vs. TrEMBL
Match: tr|A0A0B0PTG1|A0A0B0PTG1_GOSAR (Uncharacterized protein OS=Gossypium arboreum OX=29729 GN=F383_04817 PE=4 SV=1)

HSP 1 Score: 72.4 bits (176), Expect = 2.2e-10
Identity = 30/33 (90.91%), Postives = 33/33 (100.00%), Query Frame = 0


Query: 2   YIEGDFDAYVKQIQQPFVWGGEPELLMASHILK 35
           YIEGDFDAYVK+IQQP+VWGGEPELLMASH+LK
Sbjct: 231 YIEGDFDAYVKEIQQPYVWGGEPELLMASHVLK 263

[Close]

BLAST of MELO3C029435.2 vs. TrEMBL
Match: tr|A0A1U8IFM4|A0A1U8IFM4_GOSHI (OTU domain-containing protein At3g57810-like OS=Gossypium hirsutum OX=3635 GN=LOC107896321 PE=4 SV=1)

HSP 1 Score: 72.4 bits (176), Expect = 2.2e-10
Identity = 30/33 (90.91%), Postives = 33/33 (100.00%), Query Frame = 0


Query: 2   YIEGDFDAYVKQIQQPFVWGGEPELLMASHILK 35
           YIEGDFDAYVK+IQQP+VWGGEPELLMASH+LK
Sbjct: 231 YIEGDFDAYVKEIQQPYVWGGEPELLMASHVLK 263

[Close]

BLAST of MELO3C029435.2 vs. TrEMBL
Match: tr|A0A2P5YME4|A0A2P5YME4_GOSBA (Uncharacterized protein OS=Gossypium barbadense OX=3634 GN=GOBAR_AA03872 PE=4 SV=1)

HSP 1 Score: 72.4 bits (176), Expect = 2.2e-10
Identity = 30/33 (90.91%), Postives = 33/33 (100.00%), Query Frame = 0


Query: 2   YIEGDFDAYVKQIQQPFVWGGEPELLMASHILK 35
           YIEGDFDAYVK+IQQP+VWGGEPELLMASH+LK
Sbjct: 283 YIEGDFDAYVKEIQQPYVWGGEPELLMASHVLK 315

The following BLAST results are available for this feature:

BLAST of MELO3C029435.2 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004142455.1	2.0e-10	93.94	PREDICTED: OTU domain-containing protein At3g57810-like [Cucumis sativus] >KGN52...	[more]
XP_016900257.1	2.0e-10	93.94	PREDICTED: OTU domain-containing protein At3g57810-like [Cucumis melo]	[more]
XP_022139298.1	2.0e-10	93.94	OTU domain-containing protein At3g57810-like [Momordica charantia]	[more]
XP_017647111.1	3.3e-10	90.91	PREDICTED: uncharacterized protein LOC108487313 [Gossypium arboreum] >KHG26701.1...	[more]
XP_016676961.1	3.3e-10	90.91	PREDICTED: OTU domain-containing protein At3g57810-like [Gossypium hirsutum]	[more]

BLAST of MELO3C029435.2 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G57810.2	1.8e-10	69.70	Cysteine proteinases superfamily protein	[more]

BLAST of MELO3C029435.2 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q8LBZ4\|OTU_ARATH	3.3e-09	69.70	OTU domain-containing protein At3g57810 OS=Arabidopsis thaliana OX=3702 GN=At3g5...	[more]

BLAST of MELO3C029435.2 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S4DW93\|A0A1S4DW93_CUCME	1.3e-10	93.94	OTU domain-containing protein At3g57810-like OS=Cucumis melo OX=3656 GN=LOC10348...	[more]
tr\|A0A0A0KRE9\|A0A0A0KRE9_CUCSA	1.3e-10	93.94	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G615810 PE=4 SV=1	[more]
tr\|A0A0B0PTG1\|A0A0B0PTG1_GOSAR	2.2e-10	90.91	Uncharacterized protein OS=Gossypium arboreum OX=29729 GN=F383_04817 PE=4 SV=1	[more]
tr\|A0A1U8IFM4\|A0A1U8IFM4_GOSHI	2.2e-10	90.91	OTU domain-containing protein At3g57810-like OS=Gossypium hirsutum OX=3635 GN=LO...	[more]
tr\|A0A2P5YME4\|A0A2P5YME4_GOSBA	2.2e-10	90.91	Uncharacterized protein OS=Gossypium barbadense OX=3634 GN=GOBAR_AA03872 PE=4 SV...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR003323	OTU_dom

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009058	biosynthetic process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0005524	ATP binding
molecular_function	GO:0016874	ligase activity

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C029435.2.1	MELO3C029435.2.1	mRNA

InterPro

Analysis Name: InterPro Annotations of melon v3.6.1
Date Performed: 2018-09-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR003323	OTU domain	PFAM	PF02338	OTU	coord: 2..34 e-value: 6.5E-6 score: 26.6
None	No IPR available	GENE3D	G3DSA:3.90.70.80		coord: 1..34 e-value: 3.9E-7 score: 31.8
None	No IPR available	PANTHER	PTHR12419:SF14	SUBFAMILY NOT NAMED	coord: 2..34
None	No IPR available	PANTHER	PTHR12419	OTU DOMAIN CONTAINING PROTEIN	coord: 2..34

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
MELO3C029435.2	Cucumber (Gy14) v2	cgybmedB034
MELO3C029435.2	Cucumber (Gy14) v1	cgymedB646
MELO3C029435.2	Cucurbita maxima (Rimu)	cmamedB075
MELO3C029435.2	Cucurbita maxima (Rimu)	cmamedB114
MELO3C029435.2	Cucurbita moschata (Rifu)	cmomedB068
MELO3C029435.2	Cucurbita moschata (Rifu)	cmomedB107
MELO3C029435.2	Wild cucumber (PI 183967)	cpimedB038
MELO3C029435.2	Cucumber (Chinese Long) v2	cumedB035
MELO3C029435.2	Bottle gourd (USVL1VR-Ls)	lsimedB420
MELO3C029435.2	Watermelon (Charleston Gray)	medwcgB230
MELO3C029435.2	Watermelon (97103) v1	medwmB254
MELO3C029435.2	Watermelon (97103) v1	medwmB261
MELO3C029435.2	Silver-seed gourd	carmedB0906
MELO3C029435.2	Cucumber (Chinese Long) v3	cucmedB041
MELO3C029435.2	Watermelon (97103) v2	medwmbB229
MELO3C029435.2	Wax gourd	medwgoB310