MELO3C029426.2 (gene) Melon (DHL92) v3.6.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C029426.2
Type	gene
Organism	Cucumis melo (Melon (DHL92) v3.6.1)
Description	protein FAR1-RELATED SEQUENCE 4-like
Location	chr02 : 13076062 .. 13076398 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexonthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTAAAGATATTACATGGTGACACAGTTGAATTGTATGTCTTGATTCCAAGATTCTTTGATAAATTGGTTGAATCTAATCCAGATATTATCAGTTTTGTATATCAAATTTAAATTGATTTGCAAATAGATGTGGTTAGACTAATATCACAGTCTATCTAGGTAGATCAATATTTGCATCTTTCATATTCTTTCTGTTCTTTTTTGTTTGTGCCGATAGAAATGTGTTTTTAATTATTATAGGTACATGCACTGCTTTAGAAATGGATGATAGTGGTAATTTCAAGTTTTGCTTTATGACTTTTGGTGCATCAATTGAGGGGTGGAAATATTGTAG

mRNA sequence

ATGGTAAAGATATTACATGGTGACACAGTTGAATTGTATGTCTTGATTCCAAGATTCTTTGATAAATTGGTTGAATCTAATCCAGGTACATGCACTGCTTTAGAAATGGATGATAGTGGTAATTTCAAGTTTTGCTTTATGACTTTTGGTGCATCAATTGAGGGGTGGAAATATTGTAG

Coding sequence (CDS)

ATGGTAAAGATATTACATGGTGACACAGTTGAATTGTATGTCTTGATTCCAAGATTCTTTGATAAATTGGTTGAATCTAATCCAGGTACATGCACTGCTTTAGAAATGGATGATAGTGGTAATTTCAAGTTTTGCTTTATGACTTTTGGTGCATCAATTGAGGGGTGGAAATATTGT

Protein sequence

MVKILHGDTVELYVLIPRFFDKLVESNPGTCTALEMDDSGNFKFCFMTFGASIEGWKYC

Homology

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BLAST of MELO3C029426.2 vs. NCBI nr
Match: XP_016901943.1 (PREDICTED: uncharacterized protein LOC107991486 [Cucumis melo])

HSP 1 Score: 79.0 bits (193), Expect = 6.2e-12
Identity = 34/55 (61.82%), Postives = 39/55 (70.91%), Query Frame = 0


Query: 5  LHGDTVELYVLIPRFFDKLVESNPGTCTALEMDDSGNFKFCFMTFGASIEGWKYC 60
          L+G+  E Y LIP FF KL E NPG+ TA E D  G+FK+CFM  GA IEGWKYC
Sbjct: 4  LNGEAKESYALIPNFFMKLKEINPGSFTAYETDTEGHFKYCFMAIGACIEGWKYC 58

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BLAST of MELO3C029426.2 vs. NCBI nr
Match: XP_022871448.1 (protein FAR1-RELATED SEQUENCE 5-like [Olea europaea var. sylvestris])

HSP 1 Score: 74.7 bits (182), Expect = 1.2e-10
Identity = 30/58 (51.72%), Postives = 41/58 (70.69%), Query Frame = 0


Query: 2   VKILHGDTVELYVLIPRFFDKLVESNPGTCTALEMDDSGNFKFCFMTFGASIEGWKYC 60
           +K+L GD  +L+  IP FF  L ++NPG+ T+LE+D    FK+CFM  GASI GWK+C
Sbjct: 143 LKVLRGDPTDLFNKIPAFFSVLQQTNPGSVTSLEIDGHNRFKYCFMALGASIRGWKHC 200

[Close]

BLAST of MELO3C029426.2 vs. NCBI nr
Match: XP_022895272.1 (uncharacterized protein LOC111409458 [Olea europaea var. sylvestris])

HSP 1 Score: 72.4 bits (176), Expect = 5.8e-10
Identity = 29/58 (50.00%), Postives = 38/58 (65.52%), Query Frame = 0


Query: 2   VKILHGDTVELYVLIPRFFDKLVESNPGTCTALEMDDSGNFKFCFMTFGASIEGWKYC 60
           +K+L GD  + +  IP FF  L ++NPG+ T LE+D    FK+CFM  G SI GWKYC
Sbjct: 281 LKVLRGDPTDSFNKIPAFFSVLQQTNPGSVTCLEIDGHNRFKYCFMALGTSIRGWKYC 338

[Close]

BLAST of MELO3C029426.2 vs. NCBI nr
Match: XP_022872609.1 (uncharacterized protein LOC111391594 [Olea europaea var. sylvestris])

HSP 1 Score: 72.0 bits (175), Expect = 7.6e-10
Identity = 29/58 (50.00%), Postives = 40/58 (68.97%), Query Frame = 0


Query: 2   VKILHGDTVELYVLIPRFFDKLVESNPGTCTALEMDDSGNFKFCFMTFGASIEGWKYC 60
           +K+L GD  + +  IP FF  L ++NPG+ T+LE+D    FK+CFM  GASI GWK+C
Sbjct: 256 LKLLRGDPTDSFNKIPAFFSVLQQTNPGSVTSLEIDGHNRFKYCFMALGASIRGWKHC 313

[Close]

BLAST of MELO3C029426.2 vs. NCBI nr
Match: XP_022895484.1 (uncharacterized protein LOC111409704 [Olea europaea var. sylvestris])

HSP 1 Score: 71.6 bits (174), Expect = 9.9e-10
Identity = 28/58 (48.28%), Postives = 41/58 (70.69%), Query Frame = 0


Query: 2   VKILHGDTVELYVLIPRFFDKLVESNPGTCTALEMDDSGNFKFCFMTFGASIEGWKYC 60
           +K++ GD+VE +  +P FF  L + NPGT T +E+D    FK+CFM  GASI+GW++C
Sbjct: 112 LKMIRGDSVESFGKLPSFFYMLRQKNPGTITEIEVDSHSKFKYCFMALGASIQGWEHC 169

[Close]

BLAST of MELO3C029426.2 vs. TrEMBL
Match: tr|A0A1S4E145|A0A1S4E145_CUCME (uncharacterized protein LOC107991486 OS=Cucumis melo OX=3656 GN=LOC107991486 PE=4 SV=1)

HSP 1 Score: 79.0 bits (193), Expect = 4.1e-12
Identity = 34/55 (61.82%), Postives = 39/55 (70.91%), Query Frame = 0


Query: 5  LHGDTVELYVLIPRFFDKLVESNPGTCTALEMDDSGNFKFCFMTFGASIEGWKYC 60
          L+G+  E Y LIP FF KL E NPG+ TA E D  G+FK+CFM  GA IEGWKYC
Sbjct: 4  LNGEAKESYALIPNFFMKLKEINPGSFTAYETDTEGHFKYCFMAIGACIEGWKYC 58

[Close]

BLAST of MELO3C029426.2 vs. TrEMBL
Match: tr|A0A1S4E0D5|A0A1S4E0D5_CUCME (uncharacterized protein LOC107991253 OS=Cucumis melo OX=3656 GN=LOC107991253 PE=4 SV=1)

HSP 1 Score: 63.9 bits (154), Expect = 1.4e-07
Identity = 26/55 (47.27%), Postives = 33/55 (60.00%), Query Frame = 0


Query: 5   LHGDTVELYVLIPRFFDKLVESNPGTCTALEMDDSGNFKFCFMTFGASIEGWKYC 60
           + G   + YV++  F D L+ +NPGT TA E DD G FKF FM    SI+ W YC
Sbjct: 199 IRGTPKDSYVMLSTFSDALIRNNPGTYTAKEADDEGRFKFYFMALATSIDAWNYC 253

[Close]

BLAST of MELO3C029426.2 vs. TrEMBL
Match: tr|A0A1S3C300|A0A1S3C300_CUCME (uncharacterized protein LOC103495899 OS=Cucumis melo OX=3656 GN=LOC103495899 PE=4 SV=1)

HSP 1 Score: 63.5 bits (153), Expect = 1.8e-07
Identity = 26/55 (47.27%), Postives = 33/55 (60.00%), Query Frame = 0


Query: 5   LHGDTVELYVLIPRFFDKLVESNPGTCTALEMDDSGNFKFCFMTFGASIEGWKYC 60
           + G   + Y ++  F D L+ +NPGT TA E DD G FKF FM   ASI+ W YC
Sbjct: 274 IRGTPEDSYAMLSAFSDALIRNNPGTYTAEEADDEGRFKFYFMALAASIDAWNYC 328

[Close]

BLAST of MELO3C029426.2 vs. TrEMBL
Match: tr|A0A1S4E392|A0A1S4E392_CUCME (uncharacterized protein LOC107991824 OS=Cucumis melo OX=3656 GN=LOC107991824 PE=4 SV=1)

HSP 1 Score: 63.5 bits (153), Expect = 1.8e-07
Identity = 26/55 (47.27%), Postives = 33/55 (60.00%), Query Frame = 0


Query: 5  LHGDTVELYVLIPRFFDKLVESNPGTCTALEMDDSGNFKFCFMTFGASIEGWKYC 60
          + G   + Y ++  F D L+ +NPGT TA E DD G FKF FM   ASI+ W YC
Sbjct: 40 IRGTPEDSYAMLSAFSDALIRNNPGTYTAEEADDEGRFKFYFMALAASIDAWNYC 94

[Close]

BLAST of MELO3C029426.2 vs. TrEMBL
Match: tr|A0A0V0IBF7|A0A0V0IBF7_SOLCH (Putative ovule protein (Fragment) OS=Solanum chacoense OX=4108 PE=4 SV=1)

HSP 1 Score: 60.8 bits (146), Expect = 1.2e-06
Identity = 23/58 (39.66%), Postives = 39/58 (67.24%), Query Frame = 0


Query: 2   VKILHGDTVELYVLIPRFFDKLVESNPGTCTALEMDDSGNFKFCFMTFGASIEGWKYC 60
           +K+L G+ +E YV +P +   L+ +NPG+   L+  + G+F + F++  ASI+GWKYC
Sbjct: 356 LKMLRGNKIESYVKLPSYLYMLMHTNPGSIVRLQKSEGGSFLYVFVSLDASIKGWKYC 413

The following BLAST results are available for this feature:

BLAST of MELO3C029426.2 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_016901943.1	6.2e-12	61.82	PREDICTED: uncharacterized protein LOC107991486 [Cucumis melo]	[more]
XP_022871448.1	1.2e-10	51.72	protein FAR1-RELATED SEQUENCE 5-like [Olea europaea var. sylvestris]	[more]
XP_022895272.1	5.8e-10	50.00	uncharacterized protein LOC111409458 [Olea europaea var. sylvestris]	[more]
XP_022872609.1	7.6e-10	50.00	uncharacterized protein LOC111391594 [Olea europaea var. sylvestris]	[more]
XP_022895484.1	9.9e-10	48.28	uncharacterized protein LOC111409704 [Olea europaea var. sylvestris]	[more]

BLAST of MELO3C029426.2 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of MELO3C029426.2 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of MELO3C029426.2 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S4E145\|A0A1S4E145_CUCME	4.1e-12	61.82	uncharacterized protein LOC107991486 OS=Cucumis melo OX=3656 GN=LOC107991486 PE=...	[more]
tr\|A0A1S4E0D5\|A0A1S4E0D5_CUCME	1.4e-07	47.27	uncharacterized protein LOC107991253 OS=Cucumis melo OX=3656 GN=LOC107991253 PE=...	[more]
tr\|A0A1S3C300\|A0A1S3C300_CUCME	1.8e-07	47.27	uncharacterized protein LOC103495899 OS=Cucumis melo OX=3656 GN=LOC103495899 PE=...	[more]
tr\|A0A1S4E392\|A0A1S4E392_CUCME	1.8e-07	47.27	uncharacterized protein LOC107991824 OS=Cucumis melo OX=3656 GN=LOC107991824 PE=...	[more]
tr\|A0A0V0IBF7\|A0A0V0IBF7_SOLCH	1.2e-06	39.66	Putative ovule protein (Fragment) OS=Solanum chacoense OX=4108 PE=4 SV=1	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0008270	zinc ion binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C029426.2.1	MELO3C029426.2.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
MELO3C029426.2	Cucumber (Gy14) v2	cgybmedB034
MELO3C029426.2	Cucumber (Gy14) v1	cgymedB575
MELO3C029426.2	Cucurbita maxima (Rimu)	cmamedB072
MELO3C029426.2	Cucurbita maxima (Rimu)	cmamedB114
MELO3C029426.2	Cucurbita moschata (Rifu)	cmomedB064
MELO3C029426.2	Cucurbita moschata (Rifu)	cmomedB107
MELO3C029426.2	Cucurbita pepo (Zucchini)	cpemedB008
MELO3C029426.2	Cucurbita pepo (Zucchini)	cpemedB390
MELO3C029426.2	Wild cucumber (PI 183967)	cpimedB038
MELO3C029426.2	Cucumber (Chinese Long) v2	cumedB035
MELO3C029426.2	Bottle gourd (USVL1VR-Ls)	lsimedB420
MELO3C029426.2	Watermelon (Charleston Gray)	medwcgB230
MELO3C029426.2	Watermelon (97103) v1	medwmB254
MELO3C029426.2	Silver-seed gourd	carmedB0952
MELO3C029426.2	Cucumber (Chinese Long) v3	cucmedB041
MELO3C029426.2	Watermelon (97103) v2	medwmbB229
MELO3C029426.2	Wax gourd	medwgoB300
MELO3C029426.2	Wax gourd	medwgoB310