MELO3C029418.2 (gene) Melon (DHL92) v3.6.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C029418.2
Type	gene
Organism	Cucumis melo (Melon (DHL92) v3.6.1)
Description	PLANT ADHESION MOLECULE 1 family protein
Location	chr02 : 12008519 .. 12008768 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

TTTTTGATAGGAATGTTGGATATGTTCAGGTATGAATCTTCTTTTTGCATCAATCATATGTATATTAACAATTGTATTTGGTAGTGAATGGTATGTAATACTTTTAAGTGTGTAGGGGATGAGATTTTTAACTGATTTGTTGCTTCTCTATATGAGTGAAGAGGATGCATTCTGGTTGTTGGCCGAATTACTCAAAGGTGAAGTTCATGCTCCAATGGAAGGATTATATATGGTAACTCTATTCTTTTAG

mRNA sequence

TTTTTGATAGGAATGTTGGATATGTTCAGGGGATGAGATTTTTAACTGATTTGTTGCTTCTCTATATGAGTGAAGAGGATGCATTCTGGTTGTTGGCCGAATTACTCAAAGGTGAAGTTCATGCTCCAATGGAAGGATTATATATGGTAACTCTATTCTTTTAG

Coding sequence (CDS)

ATGAGATTTTTAACTGATTTGTTGCTTCTCTATATGAGTGAAGAGGATGCATTCTGGTTGTTGGCCGAATTACTCAAAGGTGAAGTTCATGCTCCAATGGAAGGATTATATATGGTAACTCTATTCTTTTAG

Protein sequence

MRFLTDLLLLYMSEEDAFWLLAELLKGEVHAPMEGLYMVTLFF

Homology

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BLAST of MELO3C029418.2 vs. NCBI nr
Match: PNR37908.1 (hypothetical protein PHYPA_021018 [Physcomitrella patens])

HSP 1 Score: 65.5 bits (158), Expect = 5.2e-08
Identity = 33/41 (80.49%), Postives = 34/41 (82.93%), Query Frame = 0


Query: 1   MRFLTDLLLLYMSEEDAFWLLAELLKGEVHAPMEGLYMVTL 42
           M FL  LLLLYMSEEDAFWLL  LLKG VHAPMEGLY+V L
Sbjct: 114 MGFLAGLLLLYMSEEDAFWLLVALLKGAVHAPMEGLYLVGL 154

[Close]

BLAST of MELO3C029418.2 vs. NCBI nr
Match: ERN05822.1 (hypothetical protein AMTR_s00006p00260160 [Amborella trichopoda])

HSP 1 Score: 65.5 bits (158), Expect = 5.2e-08
Identity = 33/41 (80.49%), Postives = 34/41 (82.93%), Query Frame = 0


Query: 1   MRFLTDLLLLYMSEEDAFWLLAELLKGEVHAPMEGLYMVTL 42
           M FL  LLLLYMSEEDAFWLL  LLKG VHAPMEGLY+V L
Sbjct: 174 MGFLAGLLLLYMSEEDAFWLLVALLKGAVHAPMEGLYLVGL 214

[Close]

BLAST of MELO3C029418.2 vs. NCBI nr
Match: XP_010261829.1 (PREDICTED: EVI5-like protein [Nelumbo nucifera])

HSP 1 Score: 65.5 bits (158), Expect = 5.2e-08
Identity = 33/41 (80.49%), Postives = 34/41 (82.93%), Query Frame = 0


Query: 1   MRFLTDLLLLYMSEEDAFWLLAELLKGEVHAPMEGLYMVTL 42
           M FL  LLLLYMSEEDAFWLL  LLKG VHAPMEGLY+V L
Sbjct: 172 MGFLAGLLLLYMSEEDAFWLLVALLKGAVHAPMEGLYLVGL 212

[Close]

BLAST of MELO3C029418.2 vs. NCBI nr
Match: XP_011092196.1 (ecotropic viral integration site 5 protein homolog isoform X1 [Sesamum indicum] >XP_011092197.1 ecotropic viral integration site 5 protein homolog isoform X1 [Sesamum indicum] >XP_020553026.1 ecotropic viral integration site 5 protein homolog isoform X1 [Sesamum indicum] >XP_020553027.1 ecotropic viral integration site 5 protein homolog isoform X1 [Sesamum indicum])

HSP 1 Score: 65.5 bits (158), Expect = 5.2e-08
Identity = 33/41 (80.49%), Postives = 34/41 (82.93%), Query Frame = 0


Query: 1   MRFLTDLLLLYMSEEDAFWLLAELLKGEVHAPMEGLYMVTL 42
           M F+  LLLLYMSEEDAFWLL  LLKG VHAPMEGLYMV L
Sbjct: 170 MGFVAGLLLLYMSEEDAFWLLVALLKGAVHAPMEGLYMVGL 210

[Close]

BLAST of MELO3C029418.2 vs. NCBI nr
Match: XP_006844147.2 (EVI5-like protein isoform X1 [Amborella trichopoda] >XP_020522727.1 EVI5-like protein isoform X1 [Amborella trichopoda] >XP_020522728.1 EVI5-like protein isoform X1 [Amborella trichopoda] >XP_020522729.1 EVI5-like protein isoform X1 [Amborella trichopoda])

HSP 1 Score: 65.5 bits (158), Expect = 5.2e-08
Identity = 33/41 (80.49%), Postives = 34/41 (82.93%), Query Frame = 0


Query: 1   MRFLTDLLLLYMSEEDAFWLLAELLKGEVHAPMEGLYMVTL 42
           M FL  LLLLYMSEEDAFWLL  LLKG VHAPMEGLY+V L
Sbjct: 180 MGFLAGLLLLYMSEEDAFWLLVALLKGAVHAPMEGLYLVGL 220

[Close]

BLAST of MELO3C029418.2 vs. TAIR10
Match: AT3G02460.1 (Ypt/Rab-GAP domain of gyp1p superfamily protein)

HSP 1 Score: 62.0 bits (149), Expect = 1.0e-10
Identity = 30/37 (81.08%), Postives = 31/37 (83.78%), Query Frame = 0


Query: 1   MRFLTDLLLLYMSEEDAFWLLAELLKGEVHAPMEGLY 38
           M F+  LLLLYMSEEDAFWLL  LLKG VHAPMEGLY
Sbjct: 175 MGFIAGLLLLYMSEEDAFWLLVALLKGAVHAPMEGLY 211

[Close]

BLAST of MELO3C029418.2 vs. TAIR10
Match: AT5G15930.1 (plant adhesion molecule 1)

HSP 1 Score: 59.7 bits (143), Expect = 5.1e-10
Identity = 29/41 (70.73%), Postives = 32/41 (78.05%), Query Frame = 0


Query: 1   MRFLTDLLLLYMSEEDAFWLLAELLKGEVHAPMEGLYMVTL 42
           M F+  LLLLYMSEEDAFWLL  LLKG VH+P+EGLY   L
Sbjct: 172 MGFIAGLLLLYMSEEDAFWLLVALLKGAVHSPIEGLYQAGL 212

[Close]

BLAST of MELO3C029418.2 vs. TrEMBL
Match: tr|M0U1F1|M0U1F1_MUSAM (Uncharacterized protein OS=Musa acuminata subsp. malaccensis OX=214687 PE=4 SV=1)

HSP 1 Score: 67.4 bits (163), Expect = 9.0e-09
Identity = 33/42 (78.57%), Postives = 34/42 (80.95%), Query Frame = 0


Query: 1   MRFLTDLLLLYMSEEDAFWLLAELLKGEVHAPMEGLYMVTLF 43
           M FL  LLLLYMSEEDAFWLL  LLKG +HAPMEGLY VT F
Sbjct: 114 MGFLAGLLLLYMSEEDAFWLLVALLKGAIHAPMEGLYQVTAF 155

[Close]

BLAST of MELO3C029418.2 vs. TrEMBL
Match: tr|A9RKU9|A9RKU9_PHYPA (Predicted protein OS=Physcomitrella patens subsp. patens OX=3218 GN=PHYPA_021018 PE=4 SV=1)

HSP 1 Score: 65.5 bits (158), Expect = 3.4e-08
Identity = 33/41 (80.49%), Postives = 34/41 (82.93%), Query Frame = 0


Query: 1   MRFLTDLLLLYMSEEDAFWLLAELLKGEVHAPMEGLYMVTL 42
           M FL  LLLLYMSEEDAFWLL  LLKG VHAPMEGLY+V L
Sbjct: 114 MGFLAGLLLLYMSEEDAFWLLVALLKGAVHAPMEGLYLVGL 154

[Close]

BLAST of MELO3C029418.2 vs. TrEMBL
Match: tr|A0A1S4E059|A0A1S4E059_CUCME (DNA repair protein recA homolog 1, chloroplastic-like isoform X1 OS=Cucumis melo OX=3656 GN=LOC103495083 PE=4 SV=1)

HSP 1 Score: 65.5 bits (158), Expect = 3.4e-08
Identity = 32/38 (84.21%), Postives = 33/38 (86.84%), Query Frame = 0


Query: 1  MRFLTDLLLLYMSEEDAFWLLAELLKGEVHAPMEGLYM 39
          M FL DLLLLYMSEEDAFWLL ELLKG VHAPME LY+
Sbjct: 20 MGFLADLLLLYMSEEDAFWLLVELLKGAVHAPMEELYL 57

[Close]

BLAST of MELO3C029418.2 vs. TrEMBL
Match: tr|W9RDZ6|W9RDZ6_9ROSA (TBC1 domain family member OS=Morus notabilis OX=981085 GN=L484_009677 PE=4 SV=1)

HSP 1 Score: 65.5 bits (158), Expect = 3.4e-08
Identity = 33/41 (80.49%), Postives = 34/41 (82.93%), Query Frame = 0


Query: 1   MRFLTDLLLLYMSEEDAFWLLAELLKGEVHAPMEGLYMVTL 42
           M FL  LLLLYMSEEDAFWLL  LLKG VHAPMEGLY+V L
Sbjct: 172 MGFLAGLLLLYMSEEDAFWLLVALLKGAVHAPMEGLYLVGL 212

[Close]

BLAST of MELO3C029418.2 vs. TrEMBL
Match: tr|A0A2N9FTM2|A0A2N9FTM2_FAGSY (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS18425 PE=4 SV=1)

HSP 1 Score: 65.5 bits (158), Expect = 3.4e-08
Identity = 33/41 (80.49%), Postives = 34/41 (82.93%), Query Frame = 0


Query: 1   MRFLTDLLLLYMSEEDAFWLLAELLKGEVHAPMEGLYMVTL 42
           M FL  LLLLYMSEEDAFWLL  LLKG VHAPMEGLY+V L
Sbjct: 172 MGFLAGLLLLYMSEEDAFWLLVALLKGAVHAPMEGLYLVGL 212

The following BLAST results are available for this feature:

BLAST of MELO3C029418.2 vs. NCBI nr


Match Name	E-value	Identity	Description
PNR37908.1	5.2e-08	80.49	hypothetical protein PHYPA_021018 [Physcomitrella patens]	[more]
ERN05822.1	5.2e-08	80.49	hypothetical protein AMTR_s00006p00260160 [Amborella trichopoda]	[more]
XP_010261829.1	5.2e-08	80.49	PREDICTED: EVI5-like protein [Nelumbo nucifera]	[more]
XP_011092196.1	5.2e-08	80.49	ecotropic viral integration site 5 protein homolog isoform X1 [Sesamum indicum] ...	[more]
XP_006844147.2	5.2e-08	80.49	EVI5-like protein isoform X1 [Amborella trichopoda] >XP_020522727.1 EVI5-like pr...	[more]

BLAST of MELO3C029418.2 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G02460.1	1.0e-10	81.08	Ypt/Rab-GAP domain of gyp1p superfamily protein	[more]
AT5G15930.1	5.1e-10	70.73	plant adhesion molecule 1	[more]

BLAST of MELO3C029418.2 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of MELO3C029418.2 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|M0U1F1\|M0U1F1_MUSAM	9.0e-09	78.57	Uncharacterized protein OS=Musa acuminata subsp. malaccensis OX=214687 PE=4 SV=1	[more]
tr\|A9RKU9\|A9RKU9_PHYPA	3.4e-08	80.49	Predicted protein OS=Physcomitrella patens subsp. patens OX=3218 GN=PHYPA_021018...	[more]
tr\|A0A1S4E059\|A0A1S4E059_CUCME	3.4e-08	84.21	DNA repair protein recA homolog 1, chloroplastic-like isoform X1 OS=Cucumis melo...	[more]
tr\|W9RDZ6\|W9RDZ6_9ROSA	3.4e-08	80.49	TBC1 domain family member OS=Morus notabilis OX=981085 GN=L484_009677 PE=4 SV=1	[more]
tr\|A0A2N9FTM2\|A0A2N9FTM2_FAGSY	3.4e-08	80.49	Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS18425 PE=4 SV=1	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR035969	Rab-GTPase_TBC_sf

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0090630	activation of GTPase activity
biological_process	GO:0006886	intracellular protein transport
biological_process	GO:0031338	regulation of vesicle fusion
cellular_component	GO:0012505	endomembrane system
cellular_component	GO:0005622	intracellular
molecular_function	GO:0005096	GTPase activator activity
molecular_function	GO:0017137	Rab GTPase binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C029418.2.1	MELO3C029418.2.1	mRNA

InterPro

Analysis Name: InterPro Annotations of melon v3.6.1
Date Performed: 2018-09-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	G3DSA:1.10.8.270		coord: 1..26 e-value: 2.5E-5 score: 26.2
IPR035969	Rab-GTPase-TBC domain superfamily	SUPERFAMILY	SSF47923	Ypt/Rab-GAP domain of gyp1p	coord: 1..28

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
MELO3C029418.2	Cucumber (Gy14) v2	cgybmedB034
MELO3C029418.2	Cucumber (Gy14) v1	cgymedB575
MELO3C029418.2	Cucurbita maxima (Rimu)	cmamedB072
MELO3C029418.2	Cucurbita maxima (Rimu)	cmamedB114
MELO3C029418.2	Cucurbita moschata (Rifu)	cmomedB064
MELO3C029418.2	Cucurbita moschata (Rifu)	cmomedB107
MELO3C029418.2	Cucurbita pepo (Zucchini)	cpemedB008
MELO3C029418.2	Cucurbita pepo (Zucchini)	cpemedB390
MELO3C029418.2	Wild cucumber (PI 183967)	cpimedB038
MELO3C029418.2	Cucumber (Chinese Long) v2	cumedB035
MELO3C029418.2	Bottle gourd (USVL1VR-Ls)	lsimedB420
MELO3C029418.2	Watermelon (Charleston Gray)	medwcgB230
MELO3C029418.2	Watermelon (97103) v1	medwmB254
MELO3C029418.2	Silver-seed gourd	carmedB0545
MELO3C029418.2	Silver-seed gourd	carmedB0952
MELO3C029418.2	Cucumber (Chinese Long) v3	cucmedB041
MELO3C029418.2	Watermelon (97103) v2	medwmbB229
MELO3C029418.2	Wax gourd	medwgoB310