MELO3C029414.2 (gene) Melon (DHL92) v3.6.1

Overview
NameMELO3C029414.2
Typegene
OrganismCucumis melo (Melon (DHL92) v3.6.1)
DescriptionylmG homolog protein 1-2, chloroplastic-like
Locationchr02 : 11630635 .. 11631992 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATTTCCCATTATCTTTCCCTCACTTTCCTCCTTCAGCGGCCACAATTTTCCCGATAAGCAAACACAACCGCGAACTATGGCTTCTTCAATAATCGCTTCTCAATCTCTTCCCATTCGCCGCCCCCTCCTCCCCCCAAACCTACGCCATCCACCACCTCCTCCGCTTCTCTCTTTGTCAGCTGTCAAATCTCCATATCTTGGCCTTAGGGTTTTAACTTCCTCGTCCCTTTCTTCTTATTCACCAAAACTTTCCCATCAATCACAAAAAATTCTGATTTCATTGCTCCTTACCGGTCCGACGTGGAAACTTGCTACCATTCTTTCTATTTCCCTAGCATTTTCGACCGTAATTGTTAAACTGGTTCAGAATGTTCGGCCGATTTTGATTCCCCAATGTCTCATAAATAATCCCTGTTCTGAGATCGGTGCCTTACAGTCGGCCAACTCTTTGTTCTTTGCTGCTTTATGGGACCCTCCCGGTGGATCTCCCAACATGCCTTTGACGACGGTTGCTGTAGGTTAGGCTAAGTGGCTGGATATTTACAGTGGAGTTTTGATGGTTAGGGTTTTGCTGAGTTGGTTCCCCAACATTTCTGGGGATTGGCAGCCAATCTCTGCAATTCGTGATCTCTGTGATCCGTACTTGAACCTCTTCCGGAATATCATTCCTCCAATCTTTGATACGCTGGATGTTAGCCCGCTCTAGGCTTTTGCGGTTCTGGGCACACTAGGGTCAATTTTGAGCAGCAGCACTCGTATGTTTTGGAGGAGGCTATGAGTGGATTTGGTTGGCTTTGGTTGGTTAGTGGCGGAATTTATGAGTAAGGTATAATTCAATTCATGGAAAGTTGGATTTGAGTTTAGGTTTTGGGATACTTTGTATTTTAATACCATAATTTGGGTTTTTTTATTCTTTCTTCAGGGGTTTTGAATTTACGAGACATGATTGTAAATTTTAGTTAAAATATTTGAATTTTGACTGCTTTTAACAGAAGCATTTGTTCGATTCAACAGAGGCATCCAATAAAGCATCTGAATATAGAAGTTATAGAAGGAACTATTTGCCCAATATTTAATGGATCTTCCTAATTATCCCCAGTAACTTTCCTATATCAATTGCTTACAGACTTCTTAAGAGAGTTCATACATCGCCAAAAACAGCAAATTTCTCCTGGATAGCATTCTGCAGGCGATCTTCAGCTTCATCTTCTGAGATTTCTGCATGCCAGAAATAGGGTCAGAACTTCTGTAACGGTAATCCCAGTACACAGACATAATGATATTATAACTTAAAAATAGAGTACCAATTGTATGGCTCAGAAAACTATGGAAAGCCAAAAAATTGGCATTCACAAGAA

mRNA sequence

ATTTCCCATTATCTTTCCCTCACTTTCCTCCTTCAGCGGCCACAATTTTCCCGATAAGCAAACACAACCGCGAACTATGGCTTCTTCAATAATCGCTTCTCAATCTCTTCCCATTCGCCGCCCCCTCCTCCCCCCAAACCTACGCCATCCACCACCTCCTCCGCTTCTCTCTTTGTCAGCTGTCAAATCTCCATATCTTGGCCTTAGGGTTTTAACTTCCTCGTCCCTTTCTTCTTATTCACCAAAACTTTCCCATCAATCACAAAAAATTCTGATTTCATTGCTCCTTACCGGTCCGACGTGGAAACTTGCTACCATTCTTTCTATTTCCCTAGCATTTTCGACCGTAATTGTTAAACTGGTTCAGAATGTTCGGCCGATTTTGATTCCCCAATGTCTCATAAATAATCCCTGTTCTGAGATCGGTGCCTTACAGTCGGCCAACTCTTTGTTCTTTGCTGCTTTATGGGACCCTCCCGGTGGATCTCCCAACATGCCTTTGACGACGGTTGCTGTAGGTTAGGCTAAGTGGCTGGATATTTACAGTGGAGTTTTGATGGTTAGGGTTTTGCTGAGTTGGTTCCCCAACATTTCTGGGGATTGGCAGCCAATCTCTGCAATTCGTGATCTCTGTGATCCGTACTTGAACCTCTTCCGGAATATCATTCCTCCAATCTTTGATACGCTGGATGTTAGCCCGCTCTAGGCTTTTGCGGTTCTGGGCACACTAGGGTCAATTTTGAGCAGCAGCACTCGTATGTTTTGGAGGAGGCTATGAGTGGATTTGGTTGGCTTTGGTTGGTTAGTGGCGGAATTTATGAGTAAGGGGTTTTGAATTTACGAGACATGATTGTAAATTTTAGTTAAAATATTTGAATTTTGACTGCTTTTAACAGAAGCATTTGTTCGATTCAACAGAGGCATCCAATAAAGCATCTGAATATAGAAGTTATAGAAGGAACTATTTGCCCAATATTTAATGGATCTTCCTAATTATCCCCAGTAACTTTCCTATATCAATTGCTTACAGACTTCTTAAGAGAGTTCATACATCGCCAAAAACAGCAAATTTCTCCTGGATAGCATTCTGCAGGCGATCTTCAGCTTCATCTTCTGAGATTTCTGCATGCCAGAAATAGGGTCAGAACTTCTGTAACGGTAATCCCAGTACACAGACATAATGATATTATAACTTAAAAATAGAGTACCAATTGTATGGCTCAGAAAACTATGGAAAGCCAAAAAATTGGCATTCACAAGAA

Coding sequence (CDS)

ATGGCTTCTTCAATAATCGCTTCTCAATCTCTTCCCATTCGCCGCCCCCTCCTCCCCCCAAACCTACGCCATCCACCACCTCCTCCGCTTCTCTCTTTGTCAGCTGTCAAATCTCCATATCTTGGCCTTAGGGTTTTAACTTCCTCGTCCCTTTCTTCTTATTCACCAAAACTTTCCCATCAATCACAAAAAATTCTGATTTCATTGCTCCTTACCGGTCCGACGTGGAAACTTGCTACCATTCTTTCTATTTCCCTAGCATTTTCGACCGTAATTGTTAAACTGGTTCAGAATGTTCGGCCGATTTTGATTCCCCAATGTCTCATAAATAATCCCTGTTCTGAGATCGGTGCCTTACAGTCGGCCAACTCTTTGTTCTTTGCTGCTTTATGGGACCCTCCCGGTGGATCTCCCAACATGCCTTTGACGACGGTTGCTGTAGGTTAG

Protein sequence

MASSIIASQSLPIRRPLLPPNLRHPPPPPLLSLSAVKSPYLGLRVLTSSSLSSYSPKLSHQSQKILISLLLTGPTWKLATILSISLAFSTVIVKLVQNVRPILIPQCLINNPCSEIGALQSANSLFFAALWDPPGGSPNMPLTTVAVG
Homology
[Close]
BLAST of MELO3C029414.2 vs. NCBI nr
Match: XP_008460284.1 (PREDICTED: ylmG homolog protein 1-2, chloroplastic-like [Cucumis melo] >XP_008460286.1 PREDICTED: ylmG homolog protein 1-2, chloroplastic-like [Cucumis melo])

HSP 1 Score: 195.7 bits (496), Expect = 1.1e-46
Identity = 114/149 (76.51%), Postives = 122/149 (81.88%), Query Frame = 0 

Query: 1   MASSIIASQSLPIRRPLLPPNLRH-PXXXXLLSLSAVKSPYLGLRVLTSSSLSSYSPKLS 60
           MASS+IASQSLP+RRPLLPPNLR  P    LL LS VKSP LGLRVL SSSLSSYSPKLS
Sbjct: 1   MASSLIASQSLPLRRPLLPPNLRRPPPSPLLLPLSTVKSPNLGLRVLASSSLSSYSPKLS 60

Query: 61  HQSQKILISLLLTGPTWKLATILSISLAFSTVIVKLVQNVRPILIPQCLINNPCSEIGAL 120
            Q Q+I IS LLTGPT  LAT+LS+SLAFSTVIVKLVQNV PILIPQCLINNPCS +GAL
Sbjct: 61  RQLQEIPISPLLTGPTRILATLLSVSLAFSTVIVKLVQNVWPILIPQCLINNPCSGLGAL 120

Query: 121 QSANSLFFAALWDPPGGSPNMPLTTVAVG 149
           Q A SLFFA+L +P  G  N PLT VAVG
Sbjct: 121 QPAGSLFFASLRNPSVGGLNTPLTVVAVG 149

[Close]
BLAST of MELO3C029414.2 vs. NCBI nr
Match: XP_004144422.1 (PREDICTED: uncharacterized protein LOC101222332 [Cucumis sativus] >XP_011651705.1 PREDICTED: uncharacterized protein LOC101222332 [Cucumis sativus] >XP_011651706.1 PREDICTED: uncharacterized protein LOC101222332 [Cucumis sativus] >KGN58431.1 hypothetical protein Csa_3G642720 [Cucumis sativus])

HSP 1 Score: 189.1 bits (479), Expect = 1.1e-44
Identity = 113/149 (75.84%), Postives = 122/149 (81.88%), Query Frame = 0 

Query: 1   MASSIIASQSLPIRRPLLPPNLRH-PXXXXLLSLSAVKSPYLGLRVLTSSSLSSYSPKLS 60
           MASS+IASQSLP+RRPLLPPNLR  P    LL LS VKSP LGLRVL SSS SSYSPKLS
Sbjct: 1   MASSLIASQSLPLRRPLLPPNLRRPPTYPLLLPLSTVKSPNLGLRVLASSSPSSYSPKLS 60

Query: 61  HQSQKILISLLLTGPTWKLATILSISLAFSTVIVKLVQNVRPILIPQCLINNPCSEIGAL 120
           HQSQ+I IS LLTGPT  LATILS+SLAFSTVIV+LVQNV PILIPQCLINNPCS +GAL
Sbjct: 61  HQSQEIPISSLLTGPTRILATILSVSLAFSTVIVQLVQNVWPILIPQCLINNPCSGLGAL 120

Query: 121 QSANSLFFAALWDPPGGSPNMPLTTVAVG 149
           Q A SLFFAA+ +    + N PLT VAVG
Sbjct: 121 QPAGSLFFAAVRNRT--ALNTPLTVVAVG 147

[Close]
BLAST of MELO3C029414.2 vs. NCBI nr
Match: XP_023527027.1 (ylmG homolog protein 1-2, chloroplastic [Cucurbita pepo subsp. pepo])

HSP 1 Score: 156.4 bits (394), Expect = 7.6e-35
Identity = 98/161 (60.87%), Postives = 111/161 (68.94%), Query Frame = 0 

Query: 1   MASSIIASQSLPIRRPLLPPNLRHPXXXXL-------------LSLSAVKSPYLGLRVLT 60
           MASS+IASQ+LP+RRP+LPP L HP                  L      SP  GLRVL 
Sbjct: 1   MASSLIASQALPLRRPVLPPKL-HPSIAIYSHSFNRPLPSPLPLRFCTANSPNHGLRVLA 60

Query: 61  SSSLSSYSPKLSHQSQKILISLLLTGPTWKLATILSISLAFSTVIVKLVQNVRPILIPQC 120
           SSS S+YSPKLS+QS++I I  LLTGPT  LATILSISL FST+IVKLVQNV P LI QC
Sbjct: 61  SSSPSAYSPKLSNQSEEIPIGSLLTGPTRVLATILSISLTFSTLIVKLVQNVWPSLIAQC 120

Query: 121 LINNPCSEIGALQSANSLFFAALWDPPGGSPNMPLTTVAVG 149
           L+ NPC+ +GA Q A SLFFAAL D PGG+ N PLT VA G
Sbjct: 121 LV-NPCTGLGAFQPAGSLFFAALVDRPGGNLNTPLTVVAAG 159

[Close]
BLAST of MELO3C029414.2 vs. NCBI nr
Match: XP_022980718.1 (ylmG homolog protein 1-2, chloroplastic-like [Cucurbita maxima] >XP_022980719.1 ylmG homolog protein 1-2, chloroplastic-like [Cucurbita maxima])

HSP 1 Score: 155.6 bits (392), Expect = 1.3e-34
Identity = 97/160 (60.62%), Postives = 111/160 (69.38%), Query Frame = 0 

Query: 1   MASSIIASQSLPIRRPLLPPNLR-------HPXXXXL-----LSLSAVKSPYLGLRVLTS 60
           MASS+IASQ+LP+RRP+LPP L        H     L     L    + SP  GLRVL S
Sbjct: 1   MASSLIASQALPLRRPVLPPKLHPSIAISSHSFNRSLPSPLPLRFCTINSPNHGLRVLAS 60

Query: 61  SSLSSYSPKLSHQSQKILISLLLTGPTWKLATILSISLAFSTVIVKLVQNVRPILIPQCL 120
           SS S+YSPK S+QS++I I  LLTGPT  LATILSISL FST+IVKLVQNV P LI QCL
Sbjct: 61  SSPSAYSPKFSNQSEEIPIGSLLTGPTRVLATILSISLTFSTLIVKLVQNVWPSLIAQCL 120

Query: 121 INNPCSEIGALQSANSLFFAALWDPPGGSPNMPLTTVAVG 149
           + NPC+ +GA Q A SLFFAAL D PGG+ N PLT VA G
Sbjct: 121 V-NPCTGLGAFQPAGSLFFAALVDRPGGNLNTPLTVVAAG 159

[Close]
BLAST of MELO3C029414.2 vs. NCBI nr
Match: XP_022956231.1 (ylmG homolog protein 1-2, chloroplastic [Cucurbita moschata] >XP_022956232.1 ylmG homolog protein 1-2, chloroplastic [Cucurbita moschata])

HSP 1 Score: 155.2 bits (391), Expect = 1.7e-34
Identity = 98/160 (61.25%), Postives = 110/160 (68.75%), Query Frame = 0 

Query: 1   MASSIIASQSLPIRRPLLPPNL-----------RHPXXXXL-LSLSAVKSPYLGLRVLTS 60
           MASS+IASQ+LP+RRP+LPP L             P    L L      SP  GLRVL S
Sbjct: 1   MASSLIASQALPLRRPVLPPKLHPSIAISSHSFNRPLPSPLPLRFCTANSPNHGLRVLAS 60

Query: 61  SSLSSYSPKLSHQSQKILISLLLTGPTWKLATILSISLAFSTVIVKLVQNVRPILIPQCL 120
           SS S+YSPKLS+QS+ I I  LLTGPT  LATILSISL FST+IVKLVQNV P LI QCL
Sbjct: 61  SSPSAYSPKLSNQSEDIPIGSLLTGPTRVLATILSISLTFSTLIVKLVQNVWPSLIAQCL 120

Query: 121 INNPCSEIGALQSANSLFFAALWDPPGGSPNMPLTTVAVG 149
           + NPC+ +GA Q A SLFFAAL D PGG+ N PLT VA G
Sbjct: 121 V-NPCTGLGAFQPAGSLFFAALVDRPGGNLNTPLTVVAAG 159

[Close]
BLAST of MELO3C029414.2 vs. TrEMBL
Match: tr|A0A1S3CC91|A0A1S3CC91_CUCME (ylmG homolog protein 1-2, chloroplastic-like OS=Cucumis melo OX=3656 GN=LOC103499156 PE=4 SV=1)

HSP 1 Score: 195.7 bits (496), Expect = 7.5e-47
Identity = 114/149 (76.51%), Postives = 122/149 (81.88%), Query Frame = 0 

Query: 1   MASSIIASQSLPIRRPLLPPNLRH-PXXXXLLSLSAVKSPYLGLRVLTSSSLSSYSPKLS 60
           MASS+IASQSLP+RRPLLPPNLR  P    LL LS VKSP LGLRVL SSSLSSYSPKLS
Sbjct: 1   MASSLIASQSLPLRRPLLPPNLRRPPPSPLLLPLSTVKSPNLGLRVLASSSLSSYSPKLS 60

Query: 61  HQSQKILISLLLTGPTWKLATILSISLAFSTVIVKLVQNVRPILIPQCLINNPCSEIGAL 120
            Q Q+I IS LLTGPT  LAT+LS+SLAFSTVIVKLVQNV PILIPQCLINNPCS +GAL
Sbjct: 61  RQLQEIPISPLLTGPTRILATLLSVSLAFSTVIVKLVQNVWPILIPQCLINNPCSGLGAL 120

Query: 121 QSANSLFFAALWDPPGGSPNMPLTTVAVG 149
           Q A SLFFA+L +P  G  N PLT VAVG
Sbjct: 121 QPAGSLFFASLRNPSVGGLNTPLTVVAVG 149

[Close]
BLAST of MELO3C029414.2 vs. TrEMBL
Match: tr|A0A0A0LEB0|A0A0A0LEB0_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G642720 PE=4 SV=1)

HSP 1 Score: 189.1 bits (479), Expect = 7.0e-45
Identity = 113/149 (75.84%), Postives = 122/149 (81.88%), Query Frame = 0 

Query: 1   MASSIIASQSLPIRRPLLPPNLRH-PXXXXLLSLSAVKSPYLGLRVLTSSSLSSYSPKLS 60
           MASS+IASQSLP+RRPLLPPNLR  P    LL LS VKSP LGLRVL SSS SSYSPKLS
Sbjct: 1   MASSLIASQSLPLRRPLLPPNLRRPPTYPLLLPLSTVKSPNLGLRVLASSSPSSYSPKLS 60

Query: 61  HQSQKILISLLLTGPTWKLATILSISLAFSTVIVKLVQNVRPILIPQCLINNPCSEIGAL 120
           HQSQ+I IS LLTGPT  LATILS+SLAFSTVIV+LVQNV PILIPQCLINNPCS +GAL
Sbjct: 61  HQSQEIPISSLLTGPTRILATILSVSLAFSTVIVQLVQNVWPILIPQCLINNPCSGLGAL 120

Query: 121 QSANSLFFAALWDPPGGSPNMPLTTVAVG 149
           Q A SLFFAA+ +    + N PLT VAVG
Sbjct: 121 QPAGSLFFAAVRNRT--ALNTPLTVVAVG 147

[Close]
BLAST of MELO3C029414.2 vs. TrEMBL
Match: tr|A0A2I4F812|A0A2I4F812_9ROSI (ylmG homolog protein 1-2, chloroplastic-like OS=Juglans regia OX=51240 GN=LOC108996372 PE=4 SV=1)

HSP 1 Score: 55.8 bits (133), Expect = 9.3e-05
Identity = 56/165 (33.94%), Postives = 78/165 (47.27%), Query Frame = 0 

Query: 3   SSIIASQSLPIRRPLL--PPNLRHPXXXXLLSLSAVKSP------------YLGLRVLTS 62
           +++I SQ+  +R PLL  PPNL+ P       L +  +P             L   VL S
Sbjct: 2   ATLITSQA--VRNPLLLTPPNLKPPFNSPRCHLLSFHNPSKPLSPRLTTKRNLATLVLAS 61

Query: 63  SS-----LSSYSPKLSHQSQKILISLLLTGPTWKLATILSISLAFSTVIVKLVQNVRPIL 122
           +S     L   +P++  QSQ  L        T  L TI +I+L FST+  KLV+N+ P +
Sbjct: 62  ASPTFPALHPRTPQIPTQSQSPL--------TRTLTTIAAIALCFSTLFSKLVENLAPQI 121

Query: 123 IPQCLINNPCSEIGALQSANSLFFAALWDPPGGSPNMPLTTVAVG 149
             Q ++         + +   LFFAAL D P G  N PLT VA G
Sbjct: 122 TQQVVLQR-----NLVSTVGPLFFAALKDRPTGYLNTPLTVVAAG 151

The following BLAST results are available for this feature:
BLAST of MELO3C029414.2 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_008460284.11.1e-4676.51PREDICTED: ylmG homolog protein 1-2, chloroplastic-like [Cucumis melo] >XP_00846... [more]
XP_004144422.11.1e-4475.84PREDICTED: uncharacterized protein LOC101222332 [Cucumis sativus] >XP_011651705.... [more]
XP_023527027.17.6e-3560.87ylmG homolog protein 1-2, chloroplastic [Cucurbita pepo subsp. pepo][more]
XP_022980718.11.3e-3460.63ylmG homolog protein 1-2, chloroplastic-like [Cucurbita maxima] >XP_022980719.1 ... [more]
XP_022956231.11.7e-3461.25ylmG homolog protein 1-2, chloroplastic [Cucurbita moschata] >XP_022956232.1 ylm... [more]
BLAST of MELO3C029414.2 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of MELO3C029414.2 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of MELO3C029414.2 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A1S3CC91|A0A1S3CC91_CUCME7.5e-4776.51ylmG homolog protein 1-2, chloroplastic-like OS=Cucumis melo OX=3656 GN=LOC10349... [more]
tr|A0A0A0LEB0|A0A0A0LEB0_CUCSA7.0e-4575.84Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G642720 PE=4 SV=1[more]
tr|A0A2I4F812|A0A2I4F812_9ROSI9.3e-0533.94ylmG homolog protein 1-2, chloroplastic-like OS=Juglans regia OX=51240 GN=LOC108... [more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0016020 membrane
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C029414.2.1MELO3C029414.2.1mRNA


Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
MELO3C029414.2Cucumber (Gy14) v2cgybmedB034
MELO3C029414.2Cucumber (Gy14) v1cgymedB575
MELO3C029414.2Cucurbita maxima (Rimu)cmamedB072
MELO3C029414.2Cucurbita maxima (Rimu)cmamedB114
MELO3C029414.2Cucurbita moschata (Rifu)cmomedB064
MELO3C029414.2Cucurbita moschata (Rifu)cmomedB107
MELO3C029414.2Cucurbita pepo (Zucchini)cpemedB008
MELO3C029414.2Cucurbita pepo (Zucchini)cpemedB390
MELO3C029414.2Wild cucumber (PI 183967)cpimedB038
MELO3C029414.2Cucumber (Chinese Long) v2cumedB035
MELO3C029414.2Bottle gourd (USVL1VR-Ls)lsimedB420
MELO3C029414.2Watermelon (Charleston Gray)medwcgB238
MELO3C029414.2Watermelon (97103) v1medwmB257
MELO3C029414.2Silver-seed gourdcarmedB0545
MELO3C029414.2Silver-seed gourdcarmedB0952
MELO3C029414.2Cucumber (Chinese Long) v3cucmedB041
MELO3C029414.2Watermelon (97103) v2medwmbB237
MELO3C029414.2Wax gourdmedwgoB299