MELO3C029369.2 (gene) Melon (DHL92) v3.6.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C029369.2
Type	gene
Organism	Cucumis melo (Melon (DHL92) v3.6.1)
Description	Unknown protein
Location	chr02 : 8737835 .. 8739544 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexonthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGATATTTCTCCTGACACTCTTGATTGGATAAGAAAATGCTTCAAAGCCCTGTTGGAAACATCAAACACTAAGCATTTCTTCAATGAAAGAAGGCAAGAGGACTACTGCATGTGGGTACGAAAAACAAAAAACAAGAGCAAATCTGGTTCCACAGCTGAAATTTTTAGAATCGACAACAAAGGTAGAAAATGCAGCGTTCTTGTTCCTGAAGGCATTGATAAATTTGGTTGGAAGTCCTTTTTAGCCATGCTAACCTTTAAGCATCACTCCCATCACAAACGGCTACGCTCTGAGGTAAGAAAAGAAAATTTCTACAGAAACTACTCATCATTTGATTCAGAAACCTCAAGGAAATCATATGCCATAGCTCTCATGGAAAGTAGTGACGATGGTAGAGATAAGAAGAACAATATACATTTTGATGATAGTTCATGCAAGCGAAGCTCAACAACTGCTCATAGTATGAAAGCCCCCCTCCGGAAAGCTTTTGAAAATGGTGAAACAGTCATTATTACAAGAAGACGCTTTCATGATGATTGGAGCCATATAATGTTTACCTTGAAGAAACAAACTGAAATAAAATTCTCCTATGAACCCTTCCATGCAAACAATGCCATTCTCACCTTCTTTGAGGATAATGCAAACTTGCTCTGTTCAAACAAGAGTACAAATGGATGGACAACTGTGGGAAACTACCAAGTCAAATTTGAGCAATGGGACACCAAAAAACATGCCTGTCAAACTCTTATTTTAAGCTATGAAGGTTGGATGCGTTTCAGAGGAGTCCCCCTTCATCTTTGGGATTATGATTCTTTTGTTAATATTGGAAAAGCTTGCGGAGGCTTTTTGGCTGTGGCGAAGGAAACAATGGAAAAGGAGAACCTCATCGAAGCAAAAATCAAAGTCAGGCACAACTACACTGGTTTTGTATCAGCTTCAATCCTGCTTACTGATAACCAAGGGGAAAACTTTGTGGTAAATACGGTTCCCCCTCCAAAGGGGAGATGGTTCATTGAAAGAAATGTTAACTTCCATGGGACCTTCAAGATTGAAGCAGCTGATGATTTCGACAGTTTGAACCCCAACGCAGAGGAGTTTACATTCGCCGAAAACCATGCCATTCCACTGAAAAATTCAAAAAATCAATCTGACAGTAAACAATCAAAGCCTGACAAAAACTCTGACTCAAATCCTACTCATGCTAAGAAAAATAGTTCATCAGAATCTGAGTATGATCCCTTTGATCAAAACTCTGATGATCGAAGGAAGGAGACGGAAAGGCCATCTTGTCAACTGATGATCAAGATATTTGCAATTACTCAACCAAATAAAAAAGATGAGCAAAGAGGAAAGTATCATTTAAATCACCTGGCGGTTATCCCTCCCACAATTCATATTTCCCAAAGAGACAAAATCTGAGCATTAATGAAAGGAAAGATGATTTTGCGGCTAATAAAGTAGTTTTATCATCCAAAAAAGTCGGCCCTTACAAATACTTCCAAAAGAAATATTACCGAATAAAAAGGAAAGTTGGCCCTCGCAGTGAAGATCATCAACTCTCCTTTGACAAAAAGGAGCTCAGTTTGACAGTTGATTTGGGACATATTCCTCCATTATGAGACCTGGACGCAACTGAAGATGTTTTAGCTCAAGTTGAAAATGTTGAGGAACCAATTCAAAGCAAATCAACAGAAAACTCAGCCCATG

mRNA sequence

ATGGATATTTCTCCTGACACTCTTGATTGGATAAGAAAATGCTTCAAAGCCCTGTTGGAAACATCAAACACTAAGCATTTCTTCAATGAAAGAAGGCAAGAGGACTACTGCATGTGGGTACGAAAAACAAAAAACAAGAGCAAATCTGGTTCCACAGCTGAAATTTTTAGAATCGACAACAAAGGTAGAAAATGCAGCGTTCTTGTTCCTGAAGGCATTGATAAATTTGAAACCTCAAGGAAATCATATGCCATAGCTCTCATGGAAAGTAGTGACGATGGTAGAGATAAGAAGAACAATATACATTTTGATGATAGTTCATGCAAGCGAAGCTCAACAACTGCTCATAGTATGAAAGCCCCCCTCCGGAAAGCTTTTGAAAATGCTTCAATCCTGCTTACTGATAACCAAGGGGAAAACTTTGTGGTAAATACGGTTCCCCCTCCAAAGGGGAGATGGTTCATTGAAAGAAATGTTAACTTCCATGGGACCTTCAAGATTGAAGCAGCTGATGATTTCGACAGTTTGAACCCCAACGCAGAGGAGTTTACATTCGCCGAAAACCATGCCATTCCACTGAAAAATTCAAAAAATCAATCTGACAGTAAACAATCAAAGCCTGACAAAAACTCTGACTCAAATCCTACTCATGCTAAGAAAAATAGTTCATCAGAATCTGAGTATGATCCCTTTGATCAAAACTCTGATGATCGAAGGAAGGAGACGGAAAGGCCATCTTGTCAACTGATGATCAAGATATTTGCAATTACTCAACCAAATAAAAAAGATGAGCAAAGAGGAAAGTATCATTTAAATCACCTGGCGGTTATCCCTCCCACAATTCATATTTCCCAAAGAGACAAAATCTGAGCATTAATGAAAGGAAAGATGATTTTGCGGCTAATAAAGTAGTTTTATCATCCAAAAAAGTCGGCCCTTACAAATACTTCCAAAAGAAATATTACCGAATAAAAAGGAAAGTTGGCCCTCGCAGTGAAGATCATCAACTCTCCTTTGACAAAAAGGAGCTCAGTTTGACAGTTGATTTGGGACATATTCCTCCATTATGAGACCTGGACGCAACTGAAGATGTTTTAGCTCAAGTTGAAAATGTTGAGGAACCAATTCAAAGCAAATCAACAGAAAACTCAGCCCATG

Coding sequence (CDS)

ATGGATATTTCTCCTGACACTCTTGATTGGATAAGAAAATGCTTCAAAGCCCTGTTGGAAACATCAAACACTAAGCATTTCTTCAATGAAAGAAGGCAAGAGGACTACTGCATGTGGGTACGAAAAACAAAAAACAAGAGCAAATCTGGTTCCACAGCTGAAATTTTTAGAATCGACAACAAAGGTAGAAAATGCAGCGTTCTTGTTCCTGAAGGCATTGATAAATTTGAAACCTCAAGGAAATCATATGCCATAGCTCTCATGGAAAGTAGTGACGATGGTAGAGATAAGAAGAACAATATACATTTTGATGATAGTTCATGCAAGCGAAGCTCAACAACTGCTCATAGTATGAAAGCCCCCCTCCGGAAAGCTTTTGAAAATGCTTCAATCCTGCTTACTGATAACCAAGGGGAAAACTTTGTGGTAAATACGGTTCCCCCTCCAAAGGGGAGATGGTTCATTGAAAGAAATGTTAACTTCCATGGGACCTTCAAGATTGAAGCAGCTGATGATTTCGACAGTTTGAACCCCAACGCAGAGGAGTTTACATTCGCCGAAAACCATGCCATTCCACTGAAAAATTCAAAAAATCAATCTGACAGTAAACAATCAAAGCCTGACAAAAACTCTGACTCAAATCCTACTCATGCTAAGAAAAATAGTTCATCAGAATCTGAGTATGATCCCTTTGATCAAAACTCTGATGATCGAAGGAAGGAGACGGAAAGGCCATCTTGTCAACTGATGATCAAGATATTTGCAATTACTCAACCAAATAAAAAAGATGAGCAAAGAGGAAAGTATCATTTAAATCACCTGGCGGTTATCCCTCCCACAATTCATATTTCCCAAAGAGACAAAATCTGA

Protein sequence

MDISPDTLDWIRKCFKALLETSNTKHFFNERRQEDYCMWVRKTKNKSKSGSTAEIFRIDNKGRKCSVLVPEGIDKFETSRKSYAIALMESSDDGRDKKNNIHFDDSSCKRSSTTAHSMKAPLRKAFENASILLTDNQGENFVVNTVPPPKGRWFIERNVNFHGTFKIEAADDFDSLNPNAEEFTFAENHAIPLKNSKNQSDSKQSKPDKNSDSNPTHAKKNSSSESEYDPFDQNSDDRRKETERPSCQLMIKIFAITQPNKKDEQRGKYHLNHLAVIPPTIHISQRDKI

Homology

[Close]

BLAST of MELO3C029369.2 vs. NCBI nr
Match: KGN51135.1 (hypothetical protein Csa_5G465580 [Cucumis sativus])

HSP 1 Score: 75.9 bits (185), Expect = 2.6e-10
Identity = 47/137 (34.31%), Postives = 72/137 (52.55%), Query Frame = 0


Query: 6   DTLDWIRKCFKALLETSNTKHFFNERRQEDYCMWVRKTKNKSKSGSTAEIFRIDNKGRKC 65
           ++LDW++  F  LL+   T  FF ++   DYC+WV+KT N  + G  AE FR+D+KGRKC
Sbjct: 14  ESLDWLKTTFNTLLKMPRTTRFFLKKGFGDYCLWVQKTHN--RKGYLAEFFRVDDKGRKC 73

Query: 66  SVLVPEGIDKFETSRKSYAIALMESSDDGRDKKNNIHFDDSSCKRSSTTAHSMKAPLRKA 125
            +LV EG DK   ++ +  ++L + +                 KRS  T  S++ P  KA
Sbjct: 74  CILVIEGRDKQGWAQFTEVLSLRKEAPQ---------------KRSPQTNPSVRGP--KA 131

Query: 126 FENASILLTDNQGENFV 143
           +  +S    DN    +V
Sbjct: 134 YSYSSSTDFDNPRHTYV 131

[Close]

BLAST of MELO3C029369.2 vs. NCBI nr
Match: ADN33672.1 (hypothetical protein [Cucumis melo subsp. melo])

HSP 1 Score: 65.9 bits (159), Expect = 2.7e-07
Identity = 62/254 (24.41%), Postives = 104/254 (40.94%), Query Frame = 0


Query: 3   ISPDTLDWIRKCFKALLETSNTKHFFNERRQEDYCMWVRKTKNKSKSGSTAEIFR--IDN 62
           ++ ++L+W++  FK LL+T  T  FF ++R E+YC+WV+KT N  + G T  + R    +
Sbjct: 84  VTLESLEWLKSTFKTLLDTPLTTRFFLKKRFEEYCLWVQKTYN--RKGRTVVLTRRYFHD 143

Query: 63  KGRKCSVLVPEGID----------------------------------------KFET-S 122
              K    + E +D                                        KFE  +
Sbjct: 144 DWEKIVEKLNEQLDTTVSYKPFHANKALICFKDFEQANLICKNKGWTTVGRFYVKFEEWN 203

Query: 123 RKSYAIALMESSDDGRDK-----------KNNIHFDDSS------CKRSSTTAHSMKAPL 182
           +K +A      S  G  K           ++ +   D+        K +      ++A +
Sbjct: 204 QKDHASPKFVPSYGGWIKVRAVPLHAWNLESFVQIGDACGGFMEVAKETRELTDLIEASI 263

Query: 183 R-----KAFENASILLTDNQGENFVVNTVPPPKGRWFIERNVNFHGTFKIEAADDFDSLN 192
           R       F  A I L D +  ++++  +   +G+W + RN + HGTF  EAA  FD  N
Sbjct: 264 RVKDNYSGFIPAFIKLIDKEERSYIIQVIVKTEGKWHLGRNPSIHGTFTREAARRFDEFN 323

[Close]

BLAST of MELO3C029369.2 vs. NCBI nr
Match: KGN61118.1 (hypothetical protein Csa_2G055060 [Cucumis sativus])

HSP 1 Score: 65.9 bits (159), Expect = 2.7e-07
Identity = 31/89 (34.83%), Postives = 49/89 (55.06%), Query Frame = 0


Query: 122 LRKAFENASILLTDNQGENFVVNTVPPPKGRWFIERNVNFHGTFKIEAADDFDSLNPNAE 181
           ++  F  A I +TD+ G +F +  V   +G+W +ERNV  HG FK +A   F   NPNA+
Sbjct: 4   IKSRFVPAYIRITDDLGNSFPIQIVSHTQGKWLVERNVRKHGIFKSQATTSFGEFNPNAK 63

Query: 182 EFTFAENHAIPLKNSKNQSDSKQSKPDKN 211
           +FTF  +  +P K+  +  +   +   KN
Sbjct: 64  QFTFIGSEGLPPKHPTSSKNKVLNDEIKN 92

[Close]

BLAST of MELO3C029369.2 vs. TrEMBL
Match: tr|A0A0A0KNC5|A0A0A0KNC5_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G465580 PE=4 SV=1)

HSP 1 Score: 75.9 bits (185), Expect = 1.7e-10
Identity = 47/137 (34.31%), Postives = 72/137 (52.55%), Query Frame = 0


Query: 6   DTLDWIRKCFKALLETSNTKHFFNERRQEDYCMWVRKTKNKSKSGSTAEIFRIDNKGRKC 65
           ++LDW++  F  LL+   T  FF ++   DYC+WV+KT N  + G  AE FR+D+KGRKC
Sbjct: 14  ESLDWLKTTFNTLLKMPRTTRFFLKKGFGDYCLWVQKTHN--RKGYLAEFFRVDDKGRKC 73

Query: 66  SVLVPEGIDKFETSRKSYAIALMESSDDGRDKKNNIHFDDSSCKRSSTTAHSMKAPLRKA 125
            +LV EG DK   ++ +  ++L + +                 KRS  T  S++ P  KA
Sbjct: 74  CILVIEGRDKQGWAQFTEVLSLRKEAPQ---------------KRSPQTNPSVRGP--KA 131

Query: 126 FENASILLTDNQGENFV 143
           +  +S    DN    +V
Sbjct: 134 YSYSSSTDFDNPRHTYV 131

[Close]

BLAST of MELO3C029369.2 vs. TrEMBL
Match: tr|E5GB30|E5GB30_CUCME (Uncharacterized protein OS=Cucumis melo subsp. melo OX=412675 PE=4 SV=1)

HSP 1 Score: 65.9 bits (159), Expect = 1.8e-07
Identity = 62/254 (24.41%), Postives = 104/254 (40.94%), Query Frame = 0


Query: 3   ISPDTLDWIRKCFKALLETSNTKHFFNERRQEDYCMWVRKTKNKSKSGSTAEIFR--IDN 62
           ++ ++L+W++  FK LL+T  T  FF ++R E+YC+WV+KT N  + G T  + R    +
Sbjct: 84  VTLESLEWLKSTFKTLLDTPLTTRFFLKKRFEEYCLWVQKTYN--RKGRTVVLTRRYFHD 143

Query: 63  KGRKCSVLVPEGID----------------------------------------KFET-S 122
              K    + E +D                                        KFE  +
Sbjct: 144 DWEKIVEKLNEQLDTTVSYKPFHANKALICFKDFEQANLICKNKGWTTVGRFYVKFEEWN 203

Query: 123 RKSYAIALMESSDDGRDK-----------KNNIHFDDSS------CKRSSTTAHSMKAPL 182
           +K +A      S  G  K           ++ +   D+        K +      ++A +
Sbjct: 204 QKDHASPKFVPSYGGWIKVRAVPLHAWNLESFVQIGDACGGFMEVAKETRELTDLIEASI 263

Query: 183 R-----KAFENASILLTDNQGENFVVNTVPPPKGRWFIERNVNFHGTFKIEAADDFDSLN 192
           R       F  A I L D +  ++++  +   +G+W + RN + HGTF  EAA  FD  N
Sbjct: 264 RVKDNYSGFIPAFIKLIDKEERSYIIQVIVKTEGKWHLGRNPSIHGTFTREAARRFDEFN 323

[Close]

BLAST of MELO3C029369.2 vs. TrEMBL
Match: tr|A0A0A0LH82|A0A0A0LH82_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G055060 PE=4 SV=1)

HSP 1 Score: 65.9 bits (159), Expect = 1.8e-07
Identity = 31/89 (34.83%), Postives = 49/89 (55.06%), Query Frame = 0


Query: 122 LRKAFENASILLTDNQGENFVVNTVPPPKGRWFIERNVNFHGTFKIEAADDFDSLNPNAE 181
           ++  F  A I +TD+ G +F +  V   +G+W +ERNV  HG FK +A   F   NPNA+
Sbjct: 4   IKSRFVPAYIRITDDLGNSFPIQIVSHTQGKWLVERNVRKHGIFKSQATTSFGEFNPNAK 63

Query: 182 EFTFAENHAIPLKNSKNQSDSKQSKPDKN 211
           +FTF  +  +P K+  +  +   +   KN
Sbjct: 64  QFTFIGSEGLPPKHPTSSKNKVLNDEIKN 92

The following BLAST results are available for this feature:

BLAST of MELO3C029369.2 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN51135.1	2.6e-10	34.31	hypothetical protein Csa_5G465580 [Cucumis sativus]	[more]
ADN33672.1	2.7e-07	24.41	hypothetical protein [Cucumis melo subsp. melo]	[more]
KGN61118.1	2.7e-07	34.83	hypothetical protein Csa_2G055060 [Cucumis sativus]	[more]

BLAST of MELO3C029369.2 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of MELO3C029369.2 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of MELO3C029369.2 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0KNC5\|A0A0A0KNC5_CUCSA	1.7e-10	34.31	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G465580 PE=4 SV=1	[more]
tr\|E5GB30\|E5GB30_CUCME	1.8e-07	24.41	Uncharacterized protein OS=Cucumis melo subsp. melo OX=412675 PE=4 SV=1	[more]
tr\|A0A0A0LH82\|A0A0A0LH82_CUCSA	1.8e-07	34.83	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G055060 PE=4 SV=1	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C029369.2.1	MELO3C029369.2.1	mRNA

InterPro

Analysis Name: InterPro Annotations of melon v3.6.1
Date Performed: 2018-09-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 188..245
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 222..245
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 201..215

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
MELO3C029369.2	Cucumber (Gy14) v2	cgybmedB032
MELO3C029369.2	Cucumber (Gy14) v1	cgymedB576
MELO3C029369.2	Cucurbita maxima (Rimu)	cmamedB069
MELO3C029369.2	Cucurbita maxima (Rimu)	cmamedB111
MELO3C029369.2	Cucurbita moschata (Rifu)	cmomedB061
MELO3C029369.2	Cucurbita moschata (Rifu)	cmomedB104
MELO3C029369.2	Cucurbita pepo (Zucchini)	cpemedB387
MELO3C029369.2	Cucurbita pepo (Zucchini)	cpemedB733
MELO3C029369.2	Wild cucumber (PI 183967)	cpimedB036
MELO3C029369.2	Cucumber (Chinese Long) v2	cumedB033
MELO3C029369.2	Bottle gourd (USVL1VR-Ls)	lsimedB418
MELO3C029369.2	Bottle gourd (USVL1VR-Ls)	lsimedB428
MELO3C029369.2	Watermelon (Charleston Gray)	medwcgB232
MELO3C029369.2	Silver-seed gourd	carmedB0546
MELO3C029369.2	Silver-seed gourd	carmedB0953
MELO3C029369.2	Cucumber (Chinese Long) v3	cucmedB039
MELO3C029369.2	Watermelon (97103) v2	medwmbB231
MELO3C029369.2	Wax gourd	medwgoB305