MELO3C029347.2 (gene) Melon (DHL92) v3.6.1

Overview
NameMELO3C029347.2
Typegene
OrganismCucumis melo (Melon (DHL92) v3.6.1)
DescriptionProtein Ycf2
Locationchr02 : 7512678 .. 7512829 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexonthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTGTGGCAGTCCGCTTTTGGGGTCAAATCAATACATTCAAAGAAGAAAGATTGGAATATCAATCTCAGCAATCTCATAAGTACCATACCAAATCCCATCAATTGAATCACTTTTTCGAGAAATATGAGACATCTAAGTCATATAAATAA

mRNA sequence

ATGGTGTGGCAGTCCGCTTTTGGGGTCAAATCAATACATTCAAAGAAGAAAGATTGGAATATCAATCTCAGCAATCTCATAAGTACCATACCAAATCCCATCAATTGAATCACTTTTTCGAGAAATATGAGACATCTAAGTCATATAAATAA

Coding sequence (CDS)

ATGGTGTGGCAGTCCGCTTTTGGGGTCAAATCAATACATTCAAAGAAGAAAGATTGGAATATCAATCTCAGCAATCTCATAAGTACCATACCAAATCCCATCAATTGA

Protein sequence

MVWQSAFGVKSIHSKKKDWNINLSNLISTIPNPIN
Homology
[Close]
BLAST of MELO3C029347.2 vs. NCBI nr
Match: YP_009432211.1 (hypothetical protein RF2 (chloroplast) [Lilium philadelphicum] >YP_009432227.1 hypothetical protein RF2 (chloroplast) [Lilium philadelphicum] >ATA66741.1 hypothetical protein RF2 (chloroplast) [Lilium philadelphicum] >ATA66759.1 hypothetical protein RF2 (chloroplast) [Lilium philadelphicum])

HSP 1 Score: 57.4 bits (137), Expect = 1.1e-05
Identity = 26/34 (76.47%), Postives = 29/34 (85.29%), Query Frame = 0 

Query: 2    VWQSAFGVKSIHSKKKDWNINLSNLISTIPNPIN 36
            +W SA+GVKSI SKKK WNINL +LIS IPNPIN
Sbjct: 1353 IWGSAYGVKSIRSKKKYWNINLIDLISIIPNPIN 1386

[Close]
BLAST of MELO3C029347.2 vs. NCBI nr
Match: YP_247643.1 (Ycf2 [Cucumis sativus] >CAJ00802.1 Ycf2 (chloroplast) [Cucumis sativus])

HSP 1 Score: 56.2 bits (134), Expect = 2.5e-05
Identity = 26/30 (86.67%), Postives = 27/30 (90.00%), Query Frame = 0 

Query: 6    AFGVKSIHSKKKDWNINLSNLISTIPNPIN 36
            A+GVKSI SKKKDWNINL NLIS IPNPIN
Sbjct: 1143 AYGVKSIRSKKKDWNINLINLISIIPNPIN 1172

[Close]
BLAST of MELO3C029347.2 vs. NCBI nr
Match: YP_247661.1 (Ycf2 [Cucumis sativus] >CAJ00820.1 ycf2 (chloroplast) [Cucumis sativus])

HSP 1 Score: 56.2 bits (134), Expect = 2.5e-05
Identity = 26/30 (86.67%), Postives = 27/30 (90.00%), Query Frame = 0 

Query: 6    AFGVKSIHSKKKDWNINLSNLISTIPNPIN 36
            A+GVKSI SKKKDWNINL NLIS IPNPIN
Sbjct: 1143 AYGVKSIRSKKKDWNINLINLISIIPNPIN 1172

[Close]
BLAST of MELO3C029347.2 vs. NCBI nr
Match: Q2QD30.1 (RecName: Full=Protein Ycf2 >AAZ94693.1 ycf2 protein (chloroplast) [Cucumis sativus] >AAZ94710.1 ycf2 protein (chloroplast) [Cucumis sativus] >ABI97475.1 hypothetical chloroplast RF2 (chloroplast) [Cucumis sativus] >ABI97478.1 hypothetical chloroplast RF2 (chloroplast) [Cucumis sativus] >ABI98789.1 hypothetical chloroplast RF2 (chloroplast) [Cucumis sativus] >ABI98807.1 hypothetical chloroplast RF2 (chloroplast) [Cucumis sativus] >ARQ16122.1 hypothetical chloroplast RF2 (chloroplast) [Cucumis sativus] >ARQ16138.1 hypothetical chloroplast RF2 (chloroplast) [Cucumis sativus] >ARQ16205.1 hypothetical chloroplast RF2 (chloroplast) [Cucumis sativus] >ARQ16221.1 hypothetical chloroplast RF2 (chloroplast) [Cucumis sativus] >ARQ16288.1 hypothetical chloroplast RF2 (chloroplast) [Cucumis sativus] >ARQ16304.1 hypothetical chloroplast RF2 (chloroplast) [Cucumis sativus] >ARQ16371.1 hypothetical chloroplast RF2 (chloroplast) [Cucumis sativus] >ARQ16387.1 hypothetical chloroplast RF2 (chloroplast) [Cucumis sativus] >AVE15375.1 Ycf2 (chloroplast) [Cucumis sativus var. sativus] >AVE15393.1 Ycf2 (chloroplast) [Cucumis sativus var. sativus])

HSP 1 Score: 56.2 bits (134), Expect = 2.5e-05
Identity = 26/30 (86.67%), Postives = 27/30 (90.00%), Query Frame = 0 

Query: 6    AFGVKSIHSKKKDWNINLSNLISTIPNPIN 36
            A+GVKSI SKKKDWNINL NLIS IPNPIN
Sbjct: 1143 AYGVKSIRSKKKDWNINLINLISIIPNPIN 1172

[Close]
BLAST of MELO3C029347.2 vs. NCBI nr
Match: YP_009346523.1 (ycf2 (chloroplast) [Cucumis x hytivus] >YP_009346537.1 photosystem I assembly protein ycf2 (chloroplast) [Cucumis x hytivus] >AOW71134.1 ycf2 (chloroplast) [Cucumis x hytivus] >AOW71148.1 photosystem I assembly protein ycf2 (chloroplast) [Cucumis x hytivus])

HSP 1 Score: 56.2 bits (134), Expect = 2.5e-05
Identity = 26/30 (86.67%), Postives = 27/30 (90.00%), Query Frame = 0 

Query: 6    AFGVKSIHSKKKDWNINLSNLISTIPNPIN 36
            A+GVKSI SKKKDWNINL NLIS IPNPIN
Sbjct: 1143 AYGVKSIRSKKKDWNINLINLISIIPNPIN 1172

[Close]
BLAST of MELO3C029347.2 vs. Swiss-Prot
Match: sp|Q2QD30|YCF2_CUCSA (Protein Ycf2 OS=Cucumis sativus OX=3659 GN=ycf2-A PE=3 SV=1)

HSP 1 Score: 56.2 bits (134), Expect = 8.3e-08
Identity = 26/30 (86.67%), Postives = 27/30 (90.00%), Query Frame = 0 

Query: 6    AFGVKSIHSKKKDWNINLSNLISTIPNPIN 36
            A+GVKSI SKKKDWNINL NLIS IPNPIN
Sbjct: 1143 AYGVKSIRSKKKDWNINLINLISIIPNPIN 1172

[Close]
BLAST of MELO3C029347.2 vs. Swiss-Prot
Match: sp|Q8S8V2|YCF2A_ATRBE (Protein Ycf2 A OS=Atropa belladonna OX=33113 GN=ycf2-A PE=3 SV=1)

HSP 1 Score: 51.6 bits (122), Expect = 2.1e-06
Identity = 23/30 (76.67%), Postives = 25/30 (83.33%), Query Frame = 0 

Query: 6    AFGVKSIHSKKKDWNINLSNLISTIPNPIN 36
            A+GVKSI SKKKDWNINL  +I  IPNPIN
Sbjct: 1444 AYGVKSIRSKKKDWNINLIEIIDLIPNPIN 1473

[Close]
BLAST of MELO3C029347.2 vs. Swiss-Prot
Match: sp|Q8S8U1|YCF2B_ATRBE (Protein Ycf2 B OS=Atropa belladonna OX=33113 GN=ycf2-B PE=3 SV=1)

HSP 1 Score: 51.6 bits (122), Expect = 2.1e-06
Identity = 23/30 (76.67%), Postives = 25/30 (83.33%), Query Frame = 0 

Query: 6    AFGVKSIHSKKKDWNINLSNLISTIPNPIN 36
            A+GVKSI SKKKDWNINL  +I  IPNPIN
Sbjct: 1444 AYGVKSIRSKKKDWNINLIEIIDLIPNPIN 1473

[Close]
BLAST of MELO3C029347.2 vs. Swiss-Prot
Match: sp|Q3C1N4|YCF2_NICSY (Protein Ycf2 OS=Nicotiana sylvestris OX=4096 GN=ycf2-A PE=3 SV=1)

HSP 1 Score: 51.6 bits (122), Expect = 2.1e-06
Identity = 23/30 (76.67%), Postives = 25/30 (83.33%), Query Frame = 0 

Query: 6    AFGVKSIHSKKKDWNINLSNLISTIPNPIN 36
            A+GVKSI SKKKDWNINL  +I  IPNPIN
Sbjct: 1433 AYGVKSIRSKKKDWNINLIEIIDLIPNPIN 1462

[Close]
BLAST of MELO3C029347.2 vs. Swiss-Prot
Match: sp|Q33BV3|YCF2_NICTO (Protein Ycf2 OS=Nicotiana tomentosiformis OX=4098 GN=ycf2-A PE=3 SV=1)

HSP 1 Score: 51.6 bits (122), Expect = 2.1e-06
Identity = 23/30 (76.67%), Postives = 25/30 (83.33%), Query Frame = 0 

Query: 6    AFGVKSIHSKKKDWNINLSNLISTIPNPIN 36
            A+GVKSI SKKKDWNINL  +I  IPNPIN
Sbjct: 1433 AYGVKSIRSKKKDWNINLIEIIDLIPNPIN 1462

[Close]
BLAST of MELO3C029347.2 vs. TrEMBL
Match: tr|A0A289YZY5|A0A289YZY5_9LILI (Protein Ycf2 OS=Lilium philadelphicum OX=84056 GN=ycf2 PE=3 SV=1)

HSP 1 Score: 57.4 bits (137), Expect = 7.6e-06
Identity = 26/34 (76.47%), Postives = 29/34 (85.29%), Query Frame = 0 

Query: 2    VWQSAFGVKSIHSKKKDWNINLSNLISTIPNPIN 36
            +W SA+GVKSI SKKK WNINL +LIS IPNPIN
Sbjct: 1353 IWGSAYGVKSIRSKKKYWNINLIDLISIIPNPIN 1386

[Close]
BLAST of MELO3C029347.2 vs. TrEMBL
Match: tr|A0A218KGA5|A0A218KGA5_CUCSA (Protein Ycf2 OS=Cucumis sativus var. hardwickii OX=319220 GN=ycf2 PE=3 SV=1)

HSP 1 Score: 56.2 bits (134), Expect = 1.7e-05
Identity = 26/30 (86.67%), Postives = 27/30 (90.00%), Query Frame = 0 

Query: 6    AFGVKSIHSKKKDWNINLSNLISTIPNPIN 36
            A+GVKSI SKKKDWNINL NLIS IPNPIN
Sbjct: 1143 AYGVKSIRSKKKDWNINLINLISIIPNPIN 1172

[Close]
BLAST of MELO3C029347.2 vs. TrEMBL
Match: tr|A0A218KG71|A0A218KG71_CUCSA (Protein Ycf2 OS=Cucumis sativus var. hardwickii OX=319220 GN=ycf2 PE=3 SV=1)

HSP 1 Score: 56.2 bits (134), Expect = 1.7e-05
Identity = 26/30 (86.67%), Postives = 27/30 (90.00%), Query Frame = 0 

Query: 6    AFGVKSIHSKKKDWNINLSNLISTIPNPIN 36
            A+GVKSI SKKKDWNINL NLIS IPNPIN
Sbjct: 1143 AYGVKSIRSKKKDWNINLINLISIIPNPIN 1172

[Close]
BLAST of MELO3C029347.2 vs. TrEMBL
Match: tr|A0A286SBA1|A0A286SBA1_CUCSA (Protein Ycf2 OS=Cucumis sativus var. hardwickii OX=319220 GN=ycf2 PE=3 SV=1)

HSP 1 Score: 56.2 bits (134), Expect = 1.7e-05
Identity = 26/30 (86.67%), Postives = 27/30 (90.00%), Query Frame = 0 

Query: 6    AFGVKSIHSKKKDWNINLSNLISTIPNPIN 36
            A+GVKSI SKKKDWNINL NLIS IPNPIN
Sbjct: 1050 AYGVKSIRSKKKDWNINLINLISIIPNPIN 1079

[Close]
BLAST of MELO3C029347.2 vs. TrEMBL
Match: tr|A0A1X9Q181|A0A1X9Q181_CUCSA (Protein Ycf2 OS=Cucumis sativus OX=3659 GN=ycf2 PE=3 SV=1)

HSP 1 Score: 56.2 bits (134), Expect = 1.7e-05
Identity = 26/30 (86.67%), Postives = 27/30 (90.00%), Query Frame = 0 

Query: 6    AFGVKSIHSKKKDWNINLSNLISTIPNPIN 36
            A+GVKSI SKKKDWNINL NLIS IPNPIN
Sbjct: 1143 AYGVKSIRSKKKDWNINLINLISIIPNPIN 1172

The following BLAST results are available for this feature:
BLAST of MELO3C029347.2 vs. NCBI nr
Match NameE-valueIdentityDescription
YP_009432211.11.1e-0576.47hypothetical protein RF2 (chloroplast) [Lilium philadelphicum] >YP_009432227.1 h... [more]
YP_247643.12.5e-0586.67Ycf2 [Cucumis sativus] >CAJ00802.1 Ycf2 (chloroplast) [Cucumis sativus][more]
YP_247661.12.5e-0586.67Ycf2 [Cucumis sativus] >CAJ00820.1 ycf2 (chloroplast) [Cucumis sativus][more]
Q2QD30.12.5e-0586.67RecName: Full=Protein Ycf2 >AAZ94693.1 ycf2 protein (chloroplast) [Cucumis sativ... [more]
YP_009346523.12.5e-0586.67ycf2 (chloroplast) [Cucumis x hytivus] >YP_009346537.1 photosystem I assembly pr... [more]
BLAST of MELO3C029347.2 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of MELO3C029347.2 vs. Swiss-Prot
Match NameE-valueIdentityDescription
sp|Q2QD30|YCF2_CUCSA8.3e-0886.67Protein Ycf2 OS=Cucumis sativus OX=3659 GN=ycf2-A PE=3 SV=1[more]
sp|Q8S8V2|YCF2A_ATRBE2.1e-0676.67Protein Ycf2 A OS=Atropa belladonna OX=33113 GN=ycf2-A PE=3 SV=1[more]
sp|Q8S8U1|YCF2B_ATRBE2.1e-0676.67Protein Ycf2 B OS=Atropa belladonna OX=33113 GN=ycf2-B PE=3 SV=1[more]
sp|Q3C1N4|YCF2_NICSY2.1e-0676.67Protein Ycf2 OS=Nicotiana sylvestris OX=4096 GN=ycf2-A PE=3 SV=1[more]
sp|Q33BV3|YCF2_NICTO2.1e-0676.67Protein Ycf2 OS=Nicotiana tomentosiformis OX=4098 GN=ycf2-A PE=3 SV=1[more]
BLAST of MELO3C029347.2 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A289YZY5|A0A289YZY5_9LILI7.6e-0676.47Protein Ycf2 OS=Lilium philadelphicum OX=84056 GN=ycf2 PE=3 SV=1[more]
tr|A0A218KGA5|A0A218KGA5_CUCSA1.7e-0586.67Protein Ycf2 OS=Cucumis sativus var. hardwickii OX=319220 GN=ycf2 PE=3 SV=1[more]
tr|A0A218KG71|A0A218KG71_CUCSA1.7e-0586.67Protein Ycf2 OS=Cucumis sativus var. hardwickii OX=319220 GN=ycf2 PE=3 SV=1[more]
tr|A0A286SBA1|A0A286SBA1_CUCSA1.7e-0586.67Protein Ycf2 OS=Cucumis sativus var. hardwickii OX=319220 GN=ycf2 PE=3 SV=1[more]
tr|A0A1X9Q181|A0A1X9Q181_CUCSA1.7e-0586.67Protein Ycf2 OS=Cucumis sativus OX=3659 GN=ycf2 PE=3 SV=1[more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0009507 chloroplast
cellular_component GO:0009570 chloroplast stroma
cellular_component GO:0016021 integral component of membrane
cellular_component GO:0016020 membrane
cellular_component GO:0009536 plastid
molecular_function GO:0005524 ATP binding
molecular_function GO:0000166 nucleotide binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C029347.2.1MELO3C029347.2.1mRNA


Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
MELO3C029347.2Cucumber (Gy14) v2cgybmedB032
MELO3C029347.2Cucumber (Gy14) v2cgybmedB404
MELO3C029347.2Cucumber (Gy14) v1cgymedB226
MELO3C029347.2Cucurbita maxima (Rimu)cmamedB069
MELO3C029347.2Cucurbita maxima (Rimu)cmamedB111
MELO3C029347.2Cucurbita moschata (Rifu)cmomedB061
MELO3C029347.2Cucurbita moschata (Rifu)cmomedB104
MELO3C029347.2Cucurbita pepo (Zucchini)cpemedB387
MELO3C029347.2Cucurbita pepo (Zucchini)cpemedB733
MELO3C029347.2Wild cucumber (PI 183967)cpimedB036
MELO3C029347.2Wild cucumber (PI 183967)cpimedB455
MELO3C029347.2Cucumber (Chinese Long) v2cumedB033
MELO3C029347.2Bottle gourd (USVL1VR-Ls)lsimedB418
MELO3C029347.2Watermelon (Charleston Gray)medwcgB237
MELO3C029347.2Watermelon (97103) v1medwmB264
MELO3C029347.2Silver-seed gourdcarmedB0434
MELO3C029347.2Silver-seed gourdcarmedB0953
MELO3C029347.2Cucumber (Chinese Long) v3cucmedB039
MELO3C029347.2Cucumber (Chinese Long) v3cucmedB464
MELO3C029347.2Watermelon (97103) v2medwmbB235
MELO3C029347.2Wax gourdmedwgoB305