MELO3C029324.2 (gene) Melon (DHL92) v3.6.1

Overview
NameMELO3C029324.2
Typegene
OrganismCucumis melo (Melon (DHL92) v3.6.1)
Descriptionnodulin homeobox isoform X2
Locationchr02 : 5587933 .. 5588159 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
AGCATACAAACTCTTCTAAGGGAAGGAACGACATTAAGAAAACAGACATTGTTGATTCTTCCAAGTCCAATGAGAATGCCAAAGAAACTAAACAAGCTGGAAGTCTAGAGGAAGAGAAGGTTGAAAATGTTCACAGTGAATAGAAGATTAGAAGAAAACAAAAACGTACCGTAATGAACAAAAAGCAGATCTCAGTAATTCAGAGAGCTCTCTTTGATGAACTTGAA

mRNA sequence

AGCATACAAACTCTTCTAAGGGAAGGAACGACATTAAGAAAACAGACATTGTTGATTCTTCCAAGTCCAATGAGAATGCCAAAGAAACTAAACAAGCTGGAAGTCTAGAGGAAGAGAAGGTTGAAAATGTTCACAGTGAATAGAAGATTAGAAGAAAACAAAAACGTACCGTAATGAACAAAAAGCAGATCTCAGTAATTCAGAGAGCTCTCTTTGATGAACTTGAA

Coding sequence (CDS)

CATACAAACTCTTCTAAGGGAAGGAACGACATTAAGAAAACAGACATTGTTGATTCTTCCAAGTCCAATGAGAATGCCAAAGAAACTAAACAAGCTGGAAGTCTAGAGGAAGAGAAGGTTGAAAATGTTCACAGTGAATAG

Protein sequence

HTNSSKGRNDIKKTDIVDSSKSNENAKETKQAGSLEEEKVENVHSE
Homology
[Close]
BLAST of MELO3C029324.2 vs. NCBI nr
Match: XP_008457500.1 (PREDICTED: nodulin homeobox isoform X1 [Cucumis melo])

HSP 1 Score: 74.3 bits (181), Expect = 1.2e-10
Identity = 40/45 (88.89%), Postives = 45/45 (100.00%), Query Frame = 0 

Query: 2   TNSSKGRNDIKKTDIVDSSKSNENAKETKQAGSLEEEKVENVHSE 47
           TNS++GRNDIK+TDIVDSSKSNENAKET+QAGSLEEEK+ENVHSE
Sbjct: 660 TNSTRGRNDIKQTDIVDSSKSNENAKETEQAGSLEEEKIENVHSE 704

[Close]
BLAST of MELO3C029324.2 vs. NCBI nr
Match: XP_008457501.1 (PREDICTED: nodulin homeobox isoform X2 [Cucumis melo] >XP_016902119.1 PREDICTED: nodulin homeobox isoform X2 [Cucumis melo])

HSP 1 Score: 74.3 bits (181), Expect = 1.2e-10
Identity = 40/45 (88.89%), Postives = 45/45 (100.00%), Query Frame = 0 

Query: 2   TNSSKGRNDIKKTDIVDSSKSNENAKETKQAGSLEEEKVENVHSE 47
           TNS++GRNDIK+TDIVDSSKSNENAKET+QAGSLEEEK+ENVHSE
Sbjct: 653 TNSTRGRNDIKQTDIVDSSKSNENAKETEQAGSLEEEKIENVHSE 697

[Close]
BLAST of MELO3C029324.2 vs. NCBI nr
Match: XP_011658036.1 (PREDICTED: uncharacterized protein LOC101207456 isoform X2 [Cucumis sativus] >XP_011658040.1 PREDICTED: uncharacterized protein LOC101207456 isoform X2 [Cucumis sativus] >KGN65698.1 hypothetical protein Csa_1G502860 [Cucumis sativus])

HSP 1 Score: 72.0 bits (175), Expect = 5.9e-10
Identity = 40/45 (88.89%), Postives = 44/45 (97.78%), Query Frame = 0 

Query: 2   TNSSKGRNDIKKTDIVDSSKSNENAKETKQAGSLEEEKVENVHSE 47
           TNS++GRN IK+TDIVDSSKSNENAKET+QAGSLEEEKVENVHSE
Sbjct: 653 TNSARGRNGIKQTDIVDSSKSNENAKETEQAGSLEEEKVENVHSE 697

[Close]
BLAST of MELO3C029324.2 vs. NCBI nr
Match: XP_011658033.1 (PREDICTED: uncharacterized protein LOC101207456 isoform X1 [Cucumis sativus])

HSP 1 Score: 72.0 bits (175), Expect = 5.9e-10
Identity = 40/45 (88.89%), Postives = 44/45 (97.78%), Query Frame = 0 

Query: 2   TNSSKGRNDIKKTDIVDSSKSNENAKETKQAGSLEEEKVENVHSE 47
           TNS++GRN IK+TDIVDSSKSNENAKET+QAGSLEEEKVENVHSE
Sbjct: 660 TNSARGRNGIKQTDIVDSSKSNENAKETEQAGSLEEEKVENVHSE 704

[Close]
BLAST of MELO3C029324.2 vs. NCBI nr
Match: XP_022949177.1 (nodulin homeobox [Cucurbita moschata])

HSP 1 Score: 63.2 bits (152), Expect = 2.7e-07
Identity = 35/45 (77.78%), Postives = 41/45 (91.11%), Query Frame = 0 

Query: 2   TNSSKGRNDIKKTDIVDSSKSNENAKETKQAGSLEEEKVENVHSE 47
           TNS++GRN I+  DIVDSSKSNENAKE +Q+G+LEEEKVENVHSE
Sbjct: 657 TNSARGRNSIQPMDIVDSSKSNENAKEIEQSGNLEEEKVENVHSE 701

[Close]
BLAST of MELO3C029324.2 vs. TrEMBL
Match: tr|A0A1S4E1L6|A0A1S4E1L6_CUCME (nodulin homeobox isoform X2 OS=Cucumis melo OX=3656 GN=LOC103497176 PE=4 SV=1)

HSP 1 Score: 74.3 bits (181), Expect = 7.9e-11
Identity = 40/45 (88.89%), Postives = 45/45 (100.00%), Query Frame = 0 

Query: 2   TNSSKGRNDIKKTDIVDSSKSNENAKETKQAGSLEEEKVENVHSE 47
           TNS++GRNDIK+TDIVDSSKSNENAKET+QAGSLEEEK+ENVHSE
Sbjct: 653 TNSTRGRNDIKQTDIVDSSKSNENAKETEQAGSLEEEKIENVHSE 697

[Close]
BLAST of MELO3C029324.2 vs. TrEMBL
Match: tr|A0A1S3C587|A0A1S3C587_CUCME (nodulin homeobox isoform X1 OS=Cucumis melo OX=3656 GN=LOC103497176 PE=4 SV=1)

HSP 1 Score: 74.3 bits (181), Expect = 7.9e-11
Identity = 40/45 (88.89%), Postives = 45/45 (100.00%), Query Frame = 0 

Query: 2   TNSSKGRNDIKKTDIVDSSKSNENAKETKQAGSLEEEKVENVHSE 47
           TNS++GRNDIK+TDIVDSSKSNENAKET+QAGSLEEEK+ENVHSE
Sbjct: 660 TNSTRGRNDIKQTDIVDSSKSNENAKETEQAGSLEEEKIENVHSE 704

[Close]
BLAST of MELO3C029324.2 vs. TrEMBL
Match: tr|A0A0A0LVA2|A0A0A0LVA2_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G502860 PE=4 SV=1)

HSP 1 Score: 72.0 bits (175), Expect = 3.9e-10
Identity = 40/45 (88.89%), Postives = 44/45 (97.78%), Query Frame = 0 

Query: 2   TNSSKGRNDIKKTDIVDSSKSNENAKETKQAGSLEEEKVENVHSE 47
           TNS++GRN IK+TDIVDSSKSNENAKET+QAGSLEEEKVENVHSE
Sbjct: 653 TNSARGRNGIKQTDIVDSSKSNENAKETEQAGSLEEEKVENVHSE 697

The following BLAST results are available for this feature:
BLAST of MELO3C029324.2 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_008457500.11.2e-1088.89PREDICTED: nodulin homeobox isoform X1 [Cucumis melo][more]
XP_008457501.11.2e-1088.89PREDICTED: nodulin homeobox isoform X2 [Cucumis melo] >XP_016902119.1 PREDICTED:... [more]
XP_011658036.15.9e-1088.89PREDICTED: uncharacterized protein LOC101207456 isoform X2 [Cucumis sativus] >XP... [more]
XP_011658033.15.9e-1088.89PREDICTED: uncharacterized protein LOC101207456 isoform X1 [Cucumis sativus][more]
XP_022949177.12.7e-0777.78nodulin homeobox [Cucurbita moschata][more]
BLAST of MELO3C029324.2 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of MELO3C029324.2 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of MELO3C029324.2 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A1S4E1L6|A0A1S4E1L6_CUCME7.9e-1188.89nodulin homeobox isoform X2 OS=Cucumis melo OX=3656 GN=LOC103497176 PE=4 SV=1[more]
tr|A0A1S3C587|A0A1S3C587_CUCME7.9e-1188.89nodulin homeobox isoform X1 OS=Cucumis melo OX=3656 GN=LOC103497176 PE=4 SV=1[more]
tr|A0A0A0LVA2|A0A0A0LVA2_CUCSA3.9e-1088.89Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G502860 PE=4 SV=1[more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003677 DNA binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C029324.2.1MELO3C029324.2.1mRNA


InterPro
Analysis Name: InterPro Annotations of melon v3.6.1
Date Performed: 2018-09-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..46

Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
MELO3C029324.2Cucumber (Gy14) v2cgybmedB032
MELO3C029324.2Cucumber (Gy14) v2cgybmedB480
MELO3C029324.2Cucumber (Gy14) v1cgymedB235
MELO3C029324.2Cucurbita maxima (Rimu)cmamedB069
MELO3C029324.2Cucurbita maxima (Rimu)cmamedB111
MELO3C029324.2Cucurbita moschata (Rifu)cmomedB061
MELO3C029324.2Cucurbita moschata (Rifu)cmomedB104
MELO3C029324.2Cucurbita pepo (Zucchini)cpemedB387
MELO3C029324.2Cucurbita pepo (Zucchini)cpemedB733
MELO3C029324.2Wild cucumber (PI 183967)cpimedB036
MELO3C029324.2Wild cucumber (PI 183967)cpimedB539
MELO3C029324.2Cucumber (Chinese Long) v2cumedB033
MELO3C029324.2Cucumber (Chinese Long) v2cumedB525
MELO3C029324.2Melon (DHL92) v3.6.1medmedB079
MELO3C029324.2Bottle gourd (USVL1VR-Ls)lsimedB218
MELO3C029324.2Bottle gourd (USVL1VR-Ls)lsimedB418
MELO3C029324.2Watermelon (Charleston Gray)medwcgB237
MELO3C029324.2Watermelon (97103) v1medwmB262
MELO3C029324.2Silver-seed gourdcarmedB0182
MELO3C029324.2Silver-seed gourdcarmedB0475
MELO3C029324.2Cucumber (Chinese Long) v3cucmedB039
MELO3C029324.2Watermelon (97103) v2medwmbB235
MELO3C029324.2Wax gourdmedwgoB287
MELO3C029324.2Wax gourdmedwgoB294