MELO3C029232.2 (gene) Melon (DHL92) v3.6.1

NameMELO3C029232.2
Typegene
OrganismCucumis melo (Melon (DHL92) v3.6.1)
DescriptionLOW QUALITY PROTEIN: gamma-aminobutyrate transaminase POP2, mitochondrial-like
Locationchr01 : 32151238 .. 32152919 (+)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexonthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGATGCCATGTTCCTCGAATTTGCAAAATATTTAGATAGTTTTATGGGAGGGTCATCGTTGGTGGGTGACAATTCGGGTGTGTCTAGTAATGGTATTCATTTTAACTTAGAATTATTTCAAGTTTTTTTATAAAATTATATATTCTTATAATTTATTGAGCAGGTACTTCTCAACCATCTGTGACTCTAACTCCTAGGAGACGTGCGCAGTCTCGACCTTTAGAGTTGGAGCACTACGTTGTAGCCAATGGGCAGATTCTGATGACGACCACCCTTGGTACGGTGAAGCCTATTTTTCCACATGTCGTTTGCTTTAGCCAGACAATAGACGTGTGTGTGCGAAAGACATTTTCCATCCGCTACCTTAAGTGGGTCTACGTAGGTAGAGAATACATCGAGGTCGTCAAGGGCGACCTTCAAGTAAGTCGACTATACATCTATGATTTCATTCGAAACATATTTAAGTTAACCAAGCTAATGTGATGTTTTTGTAATGTGTAGCGGTTTTTTGTGCTTGATTTTAATGATCAAGCAATGAATAGGTTCGTTGTGCATCAGATGCTTAACACCTTTAAAGAGTTTTGGGTCGATCGTCACAGGCACTTCACAAAGTACAGCGATCCAGAGAAGGCTCGTGCTAACCCACTATACCTATTGGTGGGACGTGATGAGGATTGACACTTCCTTTGTGACCACTACATGAGCCGTGTATTCTAGATGAGCAACTGAACCATTTGTCATGATTAATTAAGATTTTAACTTTTAATATGTATAAGAAATAAACAATACAATTGTTTTCATGCAGAGCAATCATAGACGAACAAAGCTGCTAGACAGAAGCAACCTTACAATCATAGCAGCGGGTCAAAGTTGTTTCTACAACAATAGCACGAGCTTGCTGAGCAAAGAATGGAGTCGGTTGACCATATGGAGTTATTTTGACAAACACATGTTCGAGATGGGACGTTCGTGTTCCAGGCTGTGGAGGATGCACAAGTAAGTTATCCAACCAACACTTATGCTCTTATTTGTCCTCTTTAATATATACTATATTTTTTTACTTACTAAGATAGATCCTAAATTTGTTGCAGCATCAAATGCTAGAACTTCAGTCCTAGCCTACCTCAAAGGGTAGTTGGCCACTCTCTAGGGATGAGATATACGAGACAGTGTTGGGTAGATGATCGGGCTACTCAAAAGGGCTTGGTTGGGGACCCAAGCTGAAGGCCTACAAGACGACTAGTGCAAGCAGTTCCACGACGTTATGTCCGCAGTCCATCATAAAGCTTCAATTATAGACTAAGCTTGATCAAGCTATACAACAGATTGAAGAACGATAAGAAATCACGAAGCGTTAGTTTCAGAAGTTGAACGAATGCGGAAGTTGATAGAAGACGTGACTCTGGCACAGTAAGGACCATCACATGATCCTTAACTTTGTAGTATGTATATATATGTTTCCATTATTCGTAAGTTTTTGAAATGACAGTATACAATGATGATATGCATATATATATACTAAACTTAACCACTTTTGTATCATTATAGAACCCGCAGTGTAGAATGACGTACGAGGCTTGTTAGGAGACATACAACTTTCTTTGCATTTTTTTTAACGAGGAATATTTTTTTATTTGTATTATGAATGCTGTTACTTTTTTTTTAATTTATTTCTATTAT

mRNA sequence

ATGGATGCCATGTTCCTCGAATTTGCAAAATATTTAGATAGTTTTATGGGAGGGTCATCGTTGGTGGGTGACAATTCGGGTACTTCTCAACCATCTGTGACTCTAACTCCTAGGAGACGTGCGCAGTCTCGACCTTTAGAGTTGGAGCACTACGTTGTAGCCAATGGGCAGATTCTGATGACGACCACCCTTGGTACGGTGAAGCCTATTTTTCCACATGTCGTTTGCTTTAGCCAGACAATAGACGTGTGTGTGCGAAAGACATTTTCCATCCGCTACCTTAAGTGGGTCTACGTAGGTAGAGAATACATCGAGGTCGTCAAGGGCGACCTTCAACGGTTTTTTGTGCTTGATTTTAATGATCAAGCAATGAATAGGTTCGTTGTGCATCAGATGCTTAACACCTTTAAAGAGTTTTGGGTCGATCGTCACAGGCACTTCACAAAGTACAGCGATCCAGAGAAGGCTCGTGCTAACCCACTATACCTATTGAGCAATCATAGACGAACAAAGCTGCTAGACAGAAGCAACCTTACAATCATAGCAGCGGGTCAAAGTTGTTTCTACAACAATAGCACGAGCTTGCTGAGCAAAGAATGGAGTCGGTTGACCATATGGAGTTATTTTGACAAACACATGTTCGAGATGGGACGTTCGTGTTCCAGGCTGTGGAGGATGCACAAAACCCGCAGTGTAGAATGACGTACGAGGCTTGTTAGGAGACATACAACTTTCTTTGCATTTTTTTTAACGAGGAATATTTTTTTATTTGTATTATGAATGCTGTTACTTTTTTTTTAATTTATTTCTATTAT

Coding sequence (CDS)

ATGGATGCCATGTTCCTCGAATTTGCAAAATATTTAGATAGTTTTATGGGAGGGTCATCGTTGGTGGGTGACAATTCGGGTACTTCTCAACCATCTGTGACTCTAACTCCTAGGAGACGTGCGCAGTCTCGACCTTTAGAGTTGGAGCACTACGTTGTAGCCAATGGGCAGATTCTGATGACGACCACCCTTGGTACGGTGAAGCCTATTTTTCCACATGTCGTTTGCTTTAGCCAGACAATAGACGTGTGTGTGCGAAAGACATTTTCCATCCGCTACCTTAAGTGGGTCTACGTAGGTAGAGAATACATCGAGGTCGTCAAGGGCGACCTTCAACGGTTTTTTGTGCTTGATTTTAATGATCAAGCAATGAATAGGTTCGTTGTGCATCAGATGCTTAACACCTTTAAAGAGTTTTGGGTCGATCGTCACAGGCACTTCACAAAGTACAGCGATCCAGAGAAGGCTCGTGCTAACCCACTATACCTATTGAGCAATCATAGACGAACAAAGCTGCTAGACAGAAGCAACCTTACAATCATAGCAGCGGGTCAAAGTTGTTTCTACAACAATAGCACGAGCTTGCTGAGCAAAGAATGGAGTCGGTTGACCATATGGAGTTATTTTGACAAACACATGTTCGAGATGGGACGTTCGTGTTCCAGGCTGTGGAGGATGCACAAAACCCGCAGTGTAGAATGA

Protein sequence

MDAMFLEFAKYLDSFMGGSSLVGDNSGTSQPSVTLTPRRRAQSRPLELEHYVVANGQILMTTTLGTVKPIFPHVVCFSQTIDVCVRKTFSIRYLKWVYVGREYIEVVKGDLQRFFVLDFNDQAMNRFVVHQMLNTFKEFWVDRHRHFTKYSDPEKARANPLYLLSNHRRTKLLDRSNLTIIAAGQSCFYNNSTSLLSKEWSRLTIWSYFDKHMFEMGRSCSRLWRMHKTRSVE
BLAST of MELO3C029232.2 vs. NCBI nr
Match: ADN34071.1 (CACTA en-spm transposon protein [Cucumis melo subsp. melo])

HSP 1 Score: 220.3 bits (560), Expect = 6.8e-54
Identity = 122/202 (60.40%), Postives = 137/202 (67.82%), Query Frame = 0

Query: 2   DAMFLEFAKYLDSFMGGSSLVGDNSGTSQPSVTLTPRRRAQSRPLELEHYVVANGQILMT 61
           D MFL+F   LD+  GGSS VGDN+ +S    T TPRRRAQSR LELE +V  NG I MT
Sbjct: 4   DDMFLQFEDDLDNIAGGSSSVGDNTESSSQQATPTPRRRAQSRLLELERHVAINGCIPMT 63

Query: 62  TTLGTVKPIFPHVVCFSQTIDVCVRKTFSIRYLKWVYVGREYIEVVKGDLQRFFVLDFND 121
              G  KPI P+ V FSQ I VCVRKTF +R LKWV VGREYIEVVKGDLQRFFVLDFND
Sbjct: 64  IAPGAEKPISPYAVHFSQAIGVCVRKTFPVRCLKWVDVGREYIEVVKGDLQRFFVLDFND 123

Query: 122 QAMNRFVVHQMLNTFKEFWVDRHRHFTKYSDPEKARANP----------LYLLSNHRRTK 181
           QAMNRFV HQM+ TFKEF VD HRHF KYSDPE+ARANP           + L +H   +
Sbjct: 124 QAMNRFVEHQMVTTFKEFQVDCHRHFKKYSDPEEARANPPNALVGRDEDWHFLYDHYIRR 183

Query: 182 LLDRSNLTIIAAGQSCFYNNST 194
                + T  AA Q   YN+S+
Sbjct: 184 AFQEQSWTNKAARQKQPYNHSS 205

BLAST of MELO3C029232.2 vs. NCBI nr
Match: XP_016901035.1 (PREDICTED: uncharacterized protein LOC107991153 [Cucumis melo] >XP_016901036.1 PREDICTED: uncharacterized protein LOC107991153 [Cucumis melo])

HSP 1 Score: 192.6 bits (488), Expect = 1.5e-45
Identity = 103/160 (64.38%), Postives = 116/160 (72.50%), Query Frame = 0

Query: 2   DAMFLEFAKYLDSFMGGSSLVGDNSG-TSQPSVTLTPRRRAQSRPLELEHYVVANGQILM 61
           D MFLEF   LD+  GGSS VGDN+G +SQP  T TPRRR QSR LELE +VV  G I M
Sbjct: 12  DVMFLEFEDDLDNLAGGSSSVGDNAGSSSQPPATQTPRRRVQSRLLELECHVVVYGCIPM 71

Query: 62  TTTLGTVKPIFPHVVCFSQTIDVCVRKTFSIRYLKWVYVGREYIEVVKGDLQRFFVLDFN 121
               G   PIFP+ + FSQ I VCV+KTF + YLKW  + REYIEVVKG+LQRFFVLDFN
Sbjct: 72  MIAPGAEMPIFPYAIRFSQAIGVCVQKTFFVCYLKWADIDREYIEVVKGNLQRFFVLDFN 131

Query: 122 DQAMNRFVVHQMLNTFKEFWVDRHRHFTKYSDPEKARANP 161
           DQA+NRFV HQML TFKEFW D HRHF      ++ARANP
Sbjct: 132 DQAINRFVEHQMLTTFKEFWGDCHRHF------KEARANP 165

BLAST of MELO3C029232.2 vs. NCBI nr
Match: XP_016901155.1 (PREDICTED: LOW QUALITY PROTEIN: gamma-aminobutyrate transaminase POP2, mitochondrial-like [Cucumis melo])

HSP 1 Score: 128.3 bits (321), Expect = 3.5e-26
Identity = 81/164 (49.39%), Postives = 91/164 (55.49%), Query Frame = 0

Query: 2   DAMFLEFAKYLDSFMGGSSLVGDNS-GTSQPSVTLTPRRRAQSRPLELEHYVVANGQILM 61
           D MFL+FA  LD+  GGSS + +NS  +SQPS TLTP+R  QSR LELE YV        
Sbjct: 63  DVMFLKFAGDLDNLAGGSSSMDENSESSSQPSATLTPKRHTQSRLLELECYV-------- 122

Query: 62  TTTLGTVKPIFPHVVCFSQTIDVCVRKTFSIRYLKWVYVGREYIEVVKGDLQRFFVLDFN 121
                                                  GREYIEVVK DLQ FFVLDF+
Sbjct: 123 --------------------------------------TGREYIEVVKADLQ-FFVLDFS 179

Query: 122 DQAMNRFVVHQMLNTFKEFWVDRHRHFTKYSDPEKARANPLYLL 165
           DQAMN  V +QM NTFKEFW D H+ F KYSDPE+ARANP  LL
Sbjct: 183 DQAMNTSVEYQMSNTFKEFWGDCHKQFKKYSDPEEARANPPNLL 179

BLAST of MELO3C029232.2 vs. NCBI nr
Match: XP_011648549.1 (PREDICTED: (R)-mandelonitrile lyase 1-like [Cucumis sativus])

HSP 1 Score: 113.2 bits (282), Expect = 1.2e-21
Identity = 64/115 (55.65%), Postives = 78/115 (67.83%), Query Frame = 0

Query: 18  GSSLVGDNSGTSQPSVTLTPRRRAQSRPLELEHYVVANGQILMTTTLGTVKPIFPHVVCF 77
           G SLVG+ S  SQ ++T T RRR  SR LELE Y++ NG+IL++  L   KPI PH + F
Sbjct: 709 GLSLVGETSDASQFTLTATLRRRQHSRNLELERYILQNGKILISIPLEGDKPISPHPIRF 768

Query: 78  SQTIDVCVRKTFSIRYLKWVYVGREYIEVVKGDLQRFFVLDFNDQAMNRFVVHQM 133
           S TIDV  R TF I+ LKWV V +EYIEVVK    ++FVLDF D  + RFV HQM
Sbjct: 769 SCTIDVLTRDTFPIQILKWVDVPQEYIEVVK----QWFVLDFKDLTLTRFVEHQM 819

BLAST of MELO3C029232.2 vs. NCBI nr
Match: ADN34241.1 (NBS-LRR type resistance protein [Cucumis melo subsp. melo])

HSP 1 Score: 79.0 bits (193), Expect = 2.4e-11
Identity = 39/62 (62.90%), Postives = 47/62 (75.81%), Query Frame = 0

Query: 165 SNHRRTKLLDRSNLTIIAAGQSCFYNNSTSLLSKEWSRLTIWSYFDKHMFEMGRSCSRLW 224
           SNHRRT+LLDRS+LTII AG S FYN+S S L +E SR  +W+  +KH FE+G SC RL 
Sbjct: 18  SNHRRTRLLDRSSLTIIVAGPSHFYNDSMSSLKEEGSRSIVWNCSEKHTFELGHSCRRLP 77

Query: 225 RM 227
           RM
Sbjct: 78  RM 79

BLAST of MELO3C029232.2 vs. TrEMBL
Match: tr|E5GC72|E5GC72_CUCME (CACTA en-spm transposon protein OS=Cucumis melo subsp. melo OX=412675 PE=4 SV=1)

HSP 1 Score: 220.3 bits (560), Expect = 4.5e-54
Identity = 122/202 (60.40%), Postives = 137/202 (67.82%), Query Frame = 0

Query: 2   DAMFLEFAKYLDSFMGGSSLVGDNSGTSQPSVTLTPRRRAQSRPLELEHYVVANGQILMT 61
           D MFL+F   LD+  GGSS VGDN+ +S    T TPRRRAQSR LELE +V  NG I MT
Sbjct: 4   DDMFLQFEDDLDNIAGGSSSVGDNTESSSQQATPTPRRRAQSRLLELERHVAINGCIPMT 63

Query: 62  TTLGTVKPIFPHVVCFSQTIDVCVRKTFSIRYLKWVYVGREYIEVVKGDLQRFFVLDFND 121
              G  KPI P+ V FSQ I VCVRKTF +R LKWV VGREYIEVVKGDLQRFFVLDFND
Sbjct: 64  IAPGAEKPISPYAVHFSQAIGVCVRKTFPVRCLKWVDVGREYIEVVKGDLQRFFVLDFND 123

Query: 122 QAMNRFVVHQMLNTFKEFWVDRHRHFTKYSDPEKARANP----------LYLLSNHRRTK 181
           QAMNRFV HQM+ TFKEF VD HRHF KYSDPE+ARANP           + L +H   +
Sbjct: 124 QAMNRFVEHQMVTTFKEFQVDCHRHFKKYSDPEEARANPPNALVGRDEDWHFLYDHYIRR 183

Query: 182 LLDRSNLTIIAAGQSCFYNNST 194
                + T  AA Q   YN+S+
Sbjct: 184 AFQEQSWTNKAARQKQPYNHSS 205

BLAST of MELO3C029232.2 vs. TrEMBL
Match: tr|A0A1S4DZ93|A0A1S4DZ93_CUCME (uncharacterized protein LOC107991153 OS=Cucumis melo OX=3656 GN=LOC107991153 PE=4 SV=1)

HSP 1 Score: 192.6 bits (488), Expect = 1.0e-45
Identity = 103/160 (64.38%), Postives = 116/160 (72.50%), Query Frame = 0

Query: 2   DAMFLEFAKYLDSFMGGSSLVGDNSG-TSQPSVTLTPRRRAQSRPLELEHYVVANGQILM 61
           D MFLEF   LD+  GGSS VGDN+G +SQP  T TPRRR QSR LELE +VV  G I M
Sbjct: 12  DVMFLEFEDDLDNLAGGSSSVGDNAGSSSQPPATQTPRRRVQSRLLELECHVVVYGCIPM 71

Query: 62  TTTLGTVKPIFPHVVCFSQTIDVCVRKTFSIRYLKWVYVGREYIEVVKGDLQRFFVLDFN 121
               G   PIFP+ + FSQ I VCV+KTF + YLKW  + REYIEVVKG+LQRFFVLDFN
Sbjct: 72  MIAPGAEMPIFPYAIRFSQAIGVCVQKTFFVCYLKWADIDREYIEVVKGNLQRFFVLDFN 131

Query: 122 DQAMNRFVVHQMLNTFKEFWVDRHRHFTKYSDPEKARANP 161
           DQA+NRFV HQML TFKEFW D HRHF      ++ARANP
Sbjct: 132 DQAINRFVEHQMLTTFKEFWGDCHRHF------KEARANP 165

BLAST of MELO3C029232.2 vs. TrEMBL
Match: tr|A0A1S4DZJ7|A0A1S4DZJ7_CUCME (LOW QUALITY PROTEIN: gamma-aminobutyrate transaminase POP2, mitochondrial-like OS=Cucumis melo OX=3656 GN=LOC103493054 PE=4 SV=1)

HSP 1 Score: 128.3 bits (321), Expect = 2.3e-26
Identity = 81/164 (49.39%), Postives = 91/164 (55.49%), Query Frame = 0

Query: 2   DAMFLEFAKYLDSFMGGSSLVGDNS-GTSQPSVTLTPRRRAQSRPLELEHYVVANGQILM 61
           D MFL+FA  LD+  GGSS + +NS  +SQPS TLTP+R  QSR LELE YV        
Sbjct: 63  DVMFLKFAGDLDNLAGGSSSMDENSESSSQPSATLTPKRHTQSRLLELECYV-------- 122

Query: 62  TTTLGTVKPIFPHVVCFSQTIDVCVRKTFSIRYLKWVYVGREYIEVVKGDLQRFFVLDFN 121
                                                  GREYIEVVK DLQ FFVLDF+
Sbjct: 123 --------------------------------------TGREYIEVVKADLQ-FFVLDFS 179

Query: 122 DQAMNRFVVHQMLNTFKEFWVDRHRHFTKYSDPEKARANPLYLL 165
           DQAMN  V +QM NTFKEFW D H+ F KYSDPE+ARANP  LL
Sbjct: 183 DQAMNTSVEYQMSNTFKEFWGDCHKQFKKYSDPEEARANPPNLL 179

BLAST of MELO3C029232.2 vs. TrEMBL
Match: tr|E5GCP2|E5GCP2_CUCME (NBS-LRR type resistance protein OS=Cucumis melo subsp. melo OX=412675 PE=4 SV=1)

HSP 1 Score: 79.0 bits (193), Expect = 1.6e-11
Identity = 39/62 (62.90%), Postives = 47/62 (75.81%), Query Frame = 0

Query: 165 SNHRRTKLLDRSNLTIIAAGQSCFYNNSTSLLSKEWSRLTIWSYFDKHMFEMGRSCSRLW 224
           SNHRRT+LLDRS+LTII AG S FYN+S S L +E SR  +W+  +KH FE+G SC RL 
Sbjct: 18  SNHRRTRLLDRSSLTIIVAGPSHFYNDSMSSLKEEGSRSIVWNCSEKHTFELGHSCRRLP 77

Query: 225 RM 227
           RM
Sbjct: 78  RM 79

BLAST of MELO3C029232.2 vs. TrEMBL
Match: tr|A0A1S4E4L2|A0A1S4E4L2_CUCME (uncharacterized protein LOC107992057 OS=Cucumis melo OX=3656 GN=LOC107992057 PE=4 SV=1)

HSP 1 Score: 75.5 bits (184), Expect = 1.8e-10
Identity = 44/90 (48.89%), Postives = 54/90 (60.00%), Query Frame = 0

Query: 26  SGTSQPSVTLTPRRRAQSRPLELEHYVVANGQILMTTTLGTVKPIFPHVVCFSQTIDVCV 85
           +  SQP V  TPRR   SR LEL+ YV  NG+IL+    G  K I P+VV FS TI V  
Sbjct: 288 TNASQP-VARTPRRCEHSRNLELDRYVAQNGKILIFIVPGQDKRISPYVVHFSNTIGVLT 347

Query: 86  RKTFSIRYLKWVYVGREYIEVVKGDLQRFF 116
             TF +R+LKW  +  EYIE++K  LQ  F
Sbjct: 348 GDTFLVRFLKWADMITEYIELIKSSLQISF 376

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
ADN34071.16.8e-5460.40CACTA en-spm transposon protein [Cucumis melo subsp. melo][more]
XP_016901035.11.5e-4564.38PREDICTED: uncharacterized protein LOC107991153 [Cucumis melo] >XP_016901036.1 P... [more]
XP_016901155.13.5e-2649.39PREDICTED: LOW QUALITY PROTEIN: gamma-aminobutyrate transaminase POP2, mitochond... [more]
XP_011648549.11.2e-2155.65PREDICTED: (R)-mandelonitrile lyase 1-like [Cucumis sativus][more]
ADN34241.12.4e-1162.90NBS-LRR type resistance protein [Cucumis melo subsp. melo][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
tr|E5GC72|E5GC72_CUCME4.5e-5460.40CACTA en-spm transposon protein OS=Cucumis melo subsp. melo OX=412675 PE=4 SV=1[more]
tr|A0A1S4DZ93|A0A1S4DZ93_CUCME1.0e-4564.38uncharacterized protein LOC107991153 OS=Cucumis melo OX=3656 GN=LOC107991153 PE=... [more]
tr|A0A1S4DZJ7|A0A1S4DZJ7_CUCME2.3e-2649.39LOW QUALITY PROTEIN: gamma-aminobutyrate transaminase POP2, mitochondrial-like O... [more]
tr|E5GCP2|E5GCP2_CUCME1.6e-1162.90NBS-LRR type resistance protein OS=Cucumis melo subsp. melo OX=412675 PE=4 SV=1[more]
tr|A0A1S4E4L2|A0A1S4E4L2_CUCME1.8e-1048.89uncharacterized protein LOC107992057 OS=Cucumis melo OX=3656 GN=LOC107992057 PE=... [more]
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003824 catalytic activity
molecular_function GO:0030170 pyridoxal phosphate binding
molecular_function GO:0008483 transaminase activity

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C029232.2.1MELO3C029232.2.1mRNA


The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None