MELO3C029213.2 (gene) Melon (DHL92) v3.6.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C029213.2
Type	gene
Organism	Cucumis melo (Melon (DHL92) v3.6.1)
Description	Transmembrane protein, putative
Location	chr01 : 30876070 .. 30876291 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGATACACGAGTCAGATTTTGTGTGTCGCCAAAGCACGCGAATGGACAGGCGAACATTCGCAATTCTATGTCATTTACTTTGGACTGTATCTGGTCTTTCGTCCACCGAGATTATCGACGTTGAGGAAATGGTAGCAATGTTCTTGCACGTTCTTGCCCATGACGTGAAGAACCGCGTCATTCAAAGGGAATTTGTACGGTCGGATGAGACAGTATCGTGA

mRNA sequence

ATGATACACGAGTCAGATTTTGTGTGTCGCCAAAGCACGCGAATGGACAGGCGAACATTCGCAATTCTATGTCATTTACTTTGGACTGTATCTGGTCTTTCGTCCACCGAGATTATCGACGTTGAGGAAATGGTAGCAATGTTCTTGCACGTTCTTGCCCATGACGTGAAGAACCGCGTCATTCAAAGGGAATTTGTACGGTCGGATGAGACAGTATCGTGA

Coding sequence (CDS)

ATGATACACGAGTCAGATTTTGTGTGTCGCCAAAGCACGCGAATGGACAGGCGAACATTCGCAATTCTATGTCATTTACTTTGGACTGTATCTGGTCTTTCGTCCACCGAGATTATCGACGTTGAGGAAATGGTAGCAATGTTCTTGCACGTTCTTGCCCATGACGTGAAGAACCGCGTCATTCAAAGGGAATTTGTACGGTCGGATGAGACAGTATCGTGA

Protein sequence

MIHESDFVCRQSTRMDRRTFAILCHLLWTVSGLSSTEIIDVEEMVAMFLHVLAHDVKNRVIQREFVRSDETVS

Homology

[Close]

BLAST of MELO3C029213.2 vs. NCBI nr
Match: ADN33754.1 (retrotransposon protein [Cucumis melo subsp. melo])

HSP 1 Score: 132.5 bits (332), Expect = 5.8e-28
Identity = 66/73 (90.41%), Postives = 69/73 (94.52%), Query Frame = 0


Query: 1  MIHESDFVCRQSTRMDRRTFAILCHLLWTVSGLSSTEIIDVEEMVAMFLHVLAHDVKNRV 60
          MIHESD VCRQSTRMDRRTFAILCHLL  V+GLSSTEI+DVEEMVAMFLHVLAHDVKNRV
Sbjct: 1  MIHESDLVCRQSTRMDRRTFAILCHLLRNVAGLSSTEIVDVEEMVAMFLHVLAHDVKNRV 60

Query: 61 IQREFVRSDETVS 74
          IQ+EFVRS ETVS
Sbjct: 61 IQQEFVRSGETVS 73

[Close]

BLAST of MELO3C029213.2 vs. NCBI nr
Match: XP_016899496.1 (PREDICTED: uncharacterized protein LOC107990551 [Cucumis melo])

HSP 1 Score: 128.3 bits (321), Expect = 1.1e-26
Identity = 66/73 (90.41%), Postives = 67/73 (91.78%), Query Frame = 0


Query: 1   MIHESDFVCRQSTRMDRRTFAILCHLLWTVSGLSSTEIIDVEEMVAMFLHVLAHDVKNRV 60
           MIHESD VCRQSTRMDRRTFAILCHLL TVS LSS EIIDVEEMVAMFLHVLAHDVKN V
Sbjct: 53  MIHESDLVCRQSTRMDRRTFAILCHLLRTVSVLSSIEIIDVEEMVAMFLHVLAHDVKNHV 112

Query: 61  IQREFVRSDETVS 74
           IQR+FVRS ETVS
Sbjct: 113 IQRKFVRSGETVS 125

[Close]

BLAST of MELO3C029213.2 vs. NCBI nr
Match: XP_008454692.1 (PREDICTED: uncharacterized protein LOC103495048 [Cucumis melo])

HSP 1 Score: 119.0 bits (297), Expect = 6.7e-24
Identity = 56/73 (76.71%), Postives = 66/73 (90.41%), Query Frame = 0


Query: 1   MIHESDFVCRQSTRMDRRTFAILCHLLWTVSGLSSTEIIDVEEMVAMFLHVLAHDVKNRV 60
           MIH SD VCRQSTRMD+R FAILCHLL T++ L+STE++DVEEMVAM+LH+LAHDVKNRV
Sbjct: 53  MIHGSDLVCRQSTRMDQRCFAILCHLLRTIAELTSTEVVDVEEMVAMYLHILAHDVKNRV 112

Query: 61  IQREFVRSDETVS 74
           IQREF+RS E +S
Sbjct: 113 IQREFMRSGEIIS 125

[Close]

BLAST of MELO3C029213.2 vs. NCBI nr
Match: XP_008463581.1 (PREDICTED: uncharacterized protein LOC103501690 [Cucumis melo])

HSP 1 Score: 100.5 bits (249), Expect = 2.5e-18
Identity = 50/73 (68.49%), Postives = 61/73 (83.56%), Query Frame = 0


Query: 1   MIHESDFVCRQSTRMDRRTFAILCHLLWTVSGLSSTEIIDVEEMVAMFLHVLAHDVKNRV 60
           MIH+S  VCR+ TR+DRRT  ILC+LL  V+GLS  EI+DVEEMVAMFL+VL H+VKNR+
Sbjct: 39  MIHKSHLVCREITRIDRRTLIILCNLLKIVAGLSWIEIVDVEEMVAMFLYVLVHNVKNRI 98

Query: 61  IQREFVRSDETVS 74
           IQ++FVRS ET S
Sbjct: 99  IQQKFVRSGETDS 111

[Close]

BLAST of MELO3C029213.2 vs. NCBI nr
Match: XP_008467035.1 (PREDICTED: uncharacterized protein LOC103504464, partial [Cucumis melo])

HSP 1 Score: 99.8 bits (247), Expect = 4.2e-18
Identity = 48/59 (81.36%), Postives = 55/59 (93.22%), Query Frame = 0


Query: 15 MDRRTFAILCHLLWTVSGLSSTEIIDVEEMVAMFLHVLAHDVKNRVIQREFVRSDETVS 74
          MDRR FAILCHLL T++GL+ST++ DVEEMVAMFLH+LAHDVKNRVIQREF+RS ETVS
Sbjct: 1  MDRRCFAILCHLLRTIAGLTSTKVADVEEMVAMFLHILAHDVKNRVIQREFMRSGETVS 59

[Close]

BLAST of MELO3C029213.2 vs. TrEMBL
Match: tr|E5GBB2|E5GBB2_CUCME (Retrotransposon protein OS=Cucumis melo subsp. melo OX=412675 PE=4 SV=1)

HSP 1 Score: 132.5 bits (332), Expect = 3.9e-28
Identity = 66/73 (90.41%), Postives = 69/73 (94.52%), Query Frame = 0


Query: 1  MIHESDFVCRQSTRMDRRTFAILCHLLWTVSGLSSTEIIDVEEMVAMFLHVLAHDVKNRV 60
          MIHESD VCRQSTRMDRRTFAILCHLL  V+GLSSTEI+DVEEMVAMFLHVLAHDVKNRV
Sbjct: 1  MIHESDLVCRQSTRMDRRTFAILCHLLRNVAGLSSTEIVDVEEMVAMFLHVLAHDVKNRV 60

Query: 61 IQREFVRSDETVS 74
          IQ+EFVRS ETVS
Sbjct: 61 IQQEFVRSGETVS 73

[Close]

BLAST of MELO3C029213.2 vs. TrEMBL
Match: tr|A0A1S4DU32|A0A1S4DU32_CUCME (uncharacterized protein LOC107990551 OS=Cucumis melo OX=3656 GN=LOC107990551 PE=4 SV=1)

HSP 1 Score: 128.3 bits (321), Expect = 7.3e-27
Identity = 66/73 (90.41%), Postives = 67/73 (91.78%), Query Frame = 0


Query: 1   MIHESDFVCRQSTRMDRRTFAILCHLLWTVSGLSSTEIIDVEEMVAMFLHVLAHDVKNRV 60
           MIHESD VCRQSTRMDRRTFAILCHLL TVS LSS EIIDVEEMVAMFLHVLAHDVKN V
Sbjct: 53  MIHESDLVCRQSTRMDRRTFAILCHLLRTVSVLSSIEIIDVEEMVAMFLHVLAHDVKNHV 112

Query: 61  IQREFVRSDETVS 74
           IQR+FVRS ETVS
Sbjct: 113 IQRKFVRSGETVS 125

[Close]

BLAST of MELO3C029213.2 vs. TrEMBL
Match: tr|A0A1S3BYR8|A0A1S3BYR8_CUCME (uncharacterized protein LOC103495048 OS=Cucumis melo OX=3656 GN=LOC103495048 PE=4 SV=1)

HSP 1 Score: 119.0 bits (297), Expect = 4.4e-24
Identity = 56/73 (76.71%), Postives = 66/73 (90.41%), Query Frame = 0


Query: 1   MIHESDFVCRQSTRMDRRTFAILCHLLWTVSGLSSTEIIDVEEMVAMFLHVLAHDVKNRV 60
           MIH SD VCRQSTRMD+R FAILCHLL T++ L+STE++DVEEMVAM+LH+LAHDVKNRV
Sbjct: 53  MIHGSDLVCRQSTRMDQRCFAILCHLLRTIAELTSTEVVDVEEMVAMYLHILAHDVKNRV 112

Query: 61  IQREFVRSDETVS 74
           IQREF+RS E +S
Sbjct: 113 IQREFMRSGEIIS 125

[Close]

BLAST of MELO3C029213.2 vs. TrEMBL
Match: tr|A0A1S3CL59|A0A1S3CL59_CUCME (uncharacterized protein LOC103501690 OS=Cucumis melo OX=3656 GN=LOC103501690 PE=4 SV=1)

HSP 1 Score: 100.5 bits (249), Expect = 1.6e-18
Identity = 50/73 (68.49%), Postives = 61/73 (83.56%), Query Frame = 0


Query: 1   MIHESDFVCRQSTRMDRRTFAILCHLLWTVSGLSSTEIIDVEEMVAMFLHVLAHDVKNRV 60
           MIH+S  VCR+ TR+DRRT  ILC+LL  V+GLS  EI+DVEEMVAMFL+VL H+VKNR+
Sbjct: 39  MIHKSHLVCREITRIDRRTLIILCNLLKIVAGLSWIEIVDVEEMVAMFLYVLVHNVKNRI 98

Query: 61  IQREFVRSDETVS 74
           IQ++FVRS ET S
Sbjct: 99  IQQKFVRSGETDS 111

[Close]

BLAST of MELO3C029213.2 vs. TrEMBL
Match: tr|A0A1S3CSL6|A0A1S3CSL6_CUCME (uncharacterized protein LOC103504464 OS=Cucumis melo OX=3656 GN=LOC103504464 PE=4 SV=1)

HSP 1 Score: 99.8 bits (247), Expect = 2.8e-18
Identity = 48/59 (81.36%), Postives = 55/59 (93.22%), Query Frame = 0


Query: 15 MDRRTFAILCHLLWTVSGLSSTEIIDVEEMVAMFLHVLAHDVKNRVIQREFVRSDETVS 74
          MDRR FAILCHLL T++GL+ST++ DVEEMVAMFLH+LAHDVKNRVIQREF+RS ETVS
Sbjct: 1  MDRRCFAILCHLLRTIAGLTSTKVADVEEMVAMFLHILAHDVKNRVIQREFMRSGETVS 59

The following BLAST results are available for this feature:

BLAST of MELO3C029213.2 vs. NCBI nr


Match Name	E-value	Identity	Description
ADN33754.1	5.8e-28	90.41	retrotransposon protein [Cucumis melo subsp. melo]	[more]
XP_016899496.1	1.1e-26	90.41	PREDICTED: uncharacterized protein LOC107990551 [Cucumis melo]	[more]
XP_008454692.1	6.7e-24	76.71	PREDICTED: uncharacterized protein LOC103495048 [Cucumis melo]	[more]
XP_008463581.1	2.5e-18	68.49	PREDICTED: uncharacterized protein LOC103501690 [Cucumis melo]	[more]
XP_008467035.1	4.2e-18	81.36	PREDICTED: uncharacterized protein LOC103504464, partial [Cucumis melo]	[more]

BLAST of MELO3C029213.2 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of MELO3C029213.2 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of MELO3C029213.2 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|E5GBB2\|E5GBB2_CUCME	3.9e-28	90.41	Retrotransposon protein OS=Cucumis melo subsp. melo OX=412675 PE=4 SV=1	[more]
tr\|A0A1S4DU32\|A0A1S4DU32_CUCME	7.3e-27	90.41	uncharacterized protein LOC107990551 OS=Cucumis melo OX=3656 GN=LOC107990551 PE=...	[more]
tr\|A0A1S3BYR8\|A0A1S3BYR8_CUCME	4.4e-24	76.71	uncharacterized protein LOC103495048 OS=Cucumis melo OX=3656 GN=LOC103495048 PE=...	[more]
tr\|A0A1S3CL59\|A0A1S3CL59_CUCME	1.6e-18	68.49	uncharacterized protein LOC103501690 OS=Cucumis melo OX=3656 GN=LOC103501690 PE=...	[more]
tr\|A0A1S3CSL6\|A0A1S3CSL6_CUCME	2.8e-18	81.36	uncharacterized protein LOC103504464 OS=Cucumis melo OX=3656 GN=LOC103504464 PE=...	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0016020	membrane
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C029213.2.1	MELO3C029213.2.1	mRNA

InterPro

Analysis Name: InterPro Annotations of melon v3.6.1
Date Performed: 2018-09-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR22930	UNCHARACTERIZED	coord: 1..73
None	No IPR available	PANTHER	PTHR22930:SF112	SUBFAMILY NOT NAMED	coord: 1..73

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
MELO3C029213.2	Cucumber (Chinese Long) v3	cucmedB179
MELO3C029213.2	Cucumber (Chinese Long) v3	cucmedB526
MELO3C029213.2	Watermelon (97103) v2	medwmbB185
MELO3C029213.2	Watermelon (97103) v2	medwmbB208
MELO3C029213.2	Wax gourd	medwgoB255
MELO3C029213.2	Cucumber (Gy14) v2	cgybmedB456
MELO3C029213.2	Cucumber (Gy14) v1	cgymedB091
MELO3C029213.2	Cucurbita maxima (Rimu)	cmamedB378
MELO3C029213.2	Cucurbita maxima (Rimu)	cmamedB380
MELO3C029213.2	Cucurbita maxima (Rimu)	cmamedB532
MELO3C029213.2	Cucurbita maxima (Rimu)	cmamedB923
MELO3C029213.2	Cucurbita maxima (Rimu)	cmamedB928
MELO3C029213.2	Cucurbita moschata (Rifu)	cmomedB364
MELO3C029213.2	Cucurbita moschata (Rifu)	cmomedB366
MELO3C029213.2	Cucurbita moschata (Rifu)	cmomedB520
MELO3C029213.2	Cucurbita moschata (Rifu)	cmomedB912
MELO3C029213.2	Cucurbita moschata (Rifu)	cmomedB917
MELO3C029213.2	Cucurbita pepo (Zucchini)	cpemedB151
MELO3C029213.2	Cucurbita pepo (Zucchini)	cpemedB348
MELO3C029213.2	Cucurbita pepo (Zucchini)	cpemedB351
MELO3C029213.2	Wild cucumber (PI 183967)	cpimedB176
MELO3C029213.2	Wild cucumber (PI 183967)	cpimedB513
MELO3C029213.2	Cucumber (Chinese Long) v2	cumedB177
MELO3C029213.2	Cucumber (Chinese Long) v2	cumedB502
MELO3C029213.2	Melon (DHL92) v3.6.1	medmedB092
MELO3C029213.2	Bottle gourd (USVL1VR-Ls)	lsimedB022
MELO3C029213.2	Bottle gourd (USVL1VR-Ls)	lsimedB195
MELO3C029213.2	Watermelon (Charleston Gray)	medwcgB170
MELO3C029213.2	Watermelon (Charleston Gray)	medwcgB209
MELO3C029213.2	Watermelon (97103) v1	medwmB195
MELO3C029213.2	Watermelon (97103) v1	medwmB223
MELO3C029213.2	Watermelon (97103) v1	medwmB228
MELO3C029213.2	Watermelon (97103) v1	medwmB248
MELO3C029213.2	Silver-seed gourd	carmedB0057
MELO3C029213.2	Silver-seed gourd	carmedB0069
MELO3C029213.2	Silver-seed gourd	carmedB0115
MELO3C029213.2	Silver-seed gourd	carmedB0756