MELO3C029205.2 (gene) Melon (DHL92) v3.6.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C029205.2
Type	gene
Organism	Cucumis melo (Melon (DHL92) v3.6.1)
Description	Zf-CCHC domain-containing protein
Location	chr01 : 30117194 .. 30117508 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCAAAATCTATCAAAGAAGACAGCCTTGGGATCGCCAACCACAACCTTTTCGAAAGAATCCCACAGAATCAGCAATGGAAGACAGTCCATGGTACCAAAAAATCTATCATTCCTAAAACCAATTATACAGTCCCAATCAAGAGAACTACTAACCCATATCAAAGGACTACAATTGGTAAATGCTACCGTTGTGGACAGCAGGGACACTTTTCCAAGGAATGCCCTCAAAGCAAAACCATTGCTCTTCAAGAAACCAACATTGAGGAGGAATCTGAAGACAACACTTATCAAGATGAACCTGGATTTTGTTAG

mRNA sequence

ATGTCAAAATCTATCAAAGAAGACAGCCTTGGGATCGCCAACCACAACCTTTTCGAAAGAATCCCACAGAATCAGCAATGGAAGACAGTCCATGGTACCAAAAAATCTATCATTCCTAAAACCAATTATACAGTCCCAATCAAGAGAACTACTAACCCATATCAAAGGACTACAATTGGTAAATGCTACCGTTGTGGACAGCAGGGACACTTTTCCAAGGAATGCCCTCAAAGCAAAACCATTGCTCTTCAAGAAACCAACATTGAGGAGGAATCTGAAGACAACACTTATCAAGATGAACCTGGATTTTGTTAG

Coding sequence (CDS)

ATGTCAAAATCTATCAAAGAAGACAGCCTTGGGATCGCCAACCACAACCTTTTCGAAAGAATCCCACAGAATCAGCAATGGAAGACAGTCCATGGTACCAAAAAATCTATCATTCCTAAAACCAATTATACAGTCCCAATCAAGAGAACTACTAACCCATATCAAAGGACTACAATTGGTAAATGCTACCGTTGTGGACAGCAGGGACACTTTTCCAAGGAATGCCCTCAAAGCAAAACCATTGCTCTTCAAGAAACCAACATTGAGGAGGAATCTGAAGACAACACTTATCAAGATGAACCTGGATTTTGTTAG

Protein sequence

MSKSIKEDSLGIANHNLFERIPQNQQWKTVHGTKKSIIPKTNYTVPIKRTTNPYQRTTIGKCYRCGQQGHFSKECPQSKTIALQETNIEEESEDNTYQDEPGFC

Homology

[Close]

BLAST of MELO3C029205.2 vs. NCBI nr
Match: XP_022138328.1 (uncharacterized protein LOC111009540 isoform X2 [Momordica charantia])

HSP 1 Score: 58.5 bits (140), Expect = 1.5e-05
Identity = 30/60 (50.00%), Postives = 38/60 (63.33%), Query Frame = 0


Query: 48  KRTTNPYQRTTIGKCYRCGQQGHFSKECPQSKTIA------LQETNIEEESEDNTYQDEP 102
           KR TNPY R T+GKC+RCGQ  H S ECPQ + +A      L ET+I+  +ED+    EP
Sbjct: 371 KRGTNPYIRPTLGKCFRCGQVDHLSNECPQRRALALVDQDDLLETDIDLPTEDDPTYVEP 430

[Close]

BLAST of MELO3C029205.2 vs. NCBI nr
Match: XP_022138327.1 (uncharacterized protein LOC111009540 isoform X1 [Momordica charantia])

HSP 1 Score: 58.5 bits (140), Expect = 1.5e-05
Identity = 30/60 (50.00%), Postives = 38/60 (63.33%), Query Frame = 0


Query: 48  KRTTNPYQRTTIGKCYRCGQQGHFSKECPQSKTIA------LQETNIEEESEDNTYQDEP 102
           KR TNPY R T+GKC+RCGQ  H S ECPQ + +A      L ET+I+  +ED+    EP
Sbjct: 371 KRGTNPYIRPTLGKCFRCGQVDHLSNECPQRRALALVDQDDLLETDIDLPTEDDPTYVEP 430

[Close]

BLAST of MELO3C029205.2 vs. NCBI nr
Match: XP_011015163.1 (PREDICTED: uncharacterized protein LOC105118819 [Populus euphratica])

HSP 1 Score: 55.1 bits (131), Expect = 1.7e-04
Identity = 34/76 (44.74%), Postives = 43/76 (56.58%), Query Frame = 0


Query: 29  TVHGTKKSIIP-KTNYTVPIKRTTNPYQRTTIGKCYRCGQQGHFSKECPQSKTIAL---- 88
           T+ G+  S  P KT   VP +   NPY R    KCYRCGQ GH S +CP+  TI L    
Sbjct: 241 TIKGSGSSGAPAKTTGIVPPEAPRNPYARPNSDKCYRCGQLGHRSNQCPRCSTINLIEPG 300

Query: 89  QETNI--EEESEDNTY 98
           +ET +  EEE ++ TY
Sbjct: 301 EETYMAGEEEGDEITY 316

[Close]

BLAST of MELO3C029205.2 vs. NCBI nr
Match: XP_024440968.1 (uncharacterized protein LOC112324119 [Populus trichocarpa])

HSP 1 Score: 55.1 bits (131), Expect = 1.7e-04
Identity = 36/82 (43.90%), Postives = 45/82 (54.88%), Query Frame = 0


Query: 29  TVHGTKKSIIP-KTNYTVPIKRT-TNPYQRTTIGKCYRCGQQGHFSKECPQSKTIALQET 88
           T+ GT  S  P K   T+P + T  NPY R    KCYRCGQ GH S +CP+  T+ L E 
Sbjct: 322 TIQGTSSSGAPTKPANTIPPEVTPRNPYARPGSDKCYRCGQPGHRSNQCPRRSTVNLIEP 381

Query: 89  NIE----EESEDN----TYQDE 101
            +E     E EDN    TY++E
Sbjct: 382 EVECPFDIEKEDNEAAYTYEEE 403

The following BLAST results are available for this feature:

BLAST of MELO3C029205.2 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022138328.1	1.5e-05	50.00	uncharacterized protein LOC111009540 isoform X2 [Momordica charantia]	[more]
XP_022138327.1	1.5e-05	50.00	uncharacterized protein LOC111009540 isoform X1 [Momordica charantia]	[more]
XP_011015163.1	1.7e-04	44.74	PREDICTED: uncharacterized protein LOC105118819 [Populus euphratica]	[more]
XP_024440968.1	1.7e-04	43.90	uncharacterized protein LOC112324119 [Populus trichocarpa]	[more]

BLAST of MELO3C029205.2 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of MELO3C029205.2 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of MELO3C029205.2 vs. TrEMBL


Match Name	E-value	Identity	Description

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Molecular Function**
Term	Definition
GO:0003676	nucleic acid binding
GO:0008270	zinc ion binding

Vocabulary: **INTERPRO**
Term	Definition
IPR036875	Znf_CCHC_sf
IPR001878	Znf_CCHC

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0008270	zinc ion binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C029205.2.1	MELO3C029205.2.1	mRNA

InterPro

Analysis Name: InterPro Annotations of melon v3.6.1
Date Performed: 2018-09-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001878	Zinc finger, CCHC-type	SMART	SM00343	c2hcfinal6	coord: 61..77 e-value: 2.5E-5 score: 33.7
IPR001878	Zinc finger, CCHC-type	PFAM	PF00098	zf-CCHC	coord: 60..77 e-value: 1.3E-7 score: 31.3
IPR001878	Zinc finger, CCHC-type	PROSITE	PS50158	ZF_CCHC	coord: 61..77 score: 11.466
None	No IPR available	GENE3D	G3DSA:4.10.60.10		coord: 39..87 e-value: 7.5E-9 score: 37.4
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 85..104
IPR036875	Zinc finger, CCHC-type superfamily	SUPERFAMILY	SSF57756	Retrovirus zinc finger-like domains	coord: 51..80

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
MELO3C029205.2	Cucumber (Gy14) v2	cgybmedB456
MELO3C029205.2	Cucurbita maxima (Rimu)	cmamedB376
MELO3C029205.2	Cucurbita maxima (Rimu)	cmamedB380
MELO3C029205.2	Cucurbita maxima (Rimu)	cmamedB935
MELO3C029205.2	Cucurbita maxima (Rimu)	cmamedB923
MELO3C029205.2	Cucurbita moschata (Rifu)	cmomedB362
MELO3C029205.2	Cucurbita moschata (Rifu)	cmomedB366
MELO3C029205.2	Cucurbita moschata (Rifu)	cmomedB924
MELO3C029205.2	Cucurbita moschata (Rifu)	cmomedB912
MELO3C029205.2	Cucurbita pepo (Zucchini)	cpemedB148
MELO3C029205.2	Cucurbita pepo (Zucchini)	cpemedB151
MELO3C029205.2	Cucurbita pepo (Zucchini)	cpemedB344
MELO3C029205.2	Cucurbita pepo (Zucchini)	cpemedB348
MELO3C029205.2	Cucurbita pepo (Zucchini)	cpemedB666
MELO3C029205.2	Wild cucumber (PI 183967)	cpimedB513
MELO3C029205.2	Cucumber (Chinese Long) v2	cumedB502
MELO3C029205.2	Melon (DHL92) v3.6.1	medmedB093
MELO3C029205.2	Bottle gourd (USVL1VR-Ls)	lsimedB195
MELO3C029205.2	Bottle gourd (USVL1VR-Ls)	lsimedB205
MELO3C029205.2	Watermelon (Charleston Gray)	medwcgB161
MELO3C029205.2	Watermelon (Charleston Gray)	medwcgB206
MELO3C029205.2	Watermelon (97103) v1	medwmB187
MELO3C029205.2	Watermelon (97103) v1	medwmB223
MELO3C029205.2	Silver-seed gourd	carmedB0056
MELO3C029205.2	Silver-seed gourd	carmedB0113
MELO3C029205.2	Cucumber (Chinese Long) v3	cucmedB183
MELO3C029205.2	Cucumber (Chinese Long) v3	cucmedB526
MELO3C029205.2	Watermelon (97103) v2	medwmbB180
MELO3C029205.2	Watermelon (97103) v2	medwmbB199
MELO3C029205.2	Wax gourd	medwgoB211
MELO3C029205.2	Wax gourd	medwgoB261