MELO3C029202.2 (gene) Melon (DHL92) v3.6.1

NameMELO3C029202.2
Typegene
OrganismCucumis melo (Melon (DHL92) v3.6.1)
Description40S ribosomal protein S15a
Locationchr01 : 29525516 .. 29525974 (-)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCAAAACTCCATAGTGGATGCTCAAAACCATATTCAGTAGAAGAAACTAAGAACTTTGCCTCCAACATTCTTCCTTCTTGCTTCTGCATGTTCCATAATTCCAGCAGAAGTTGTCAACACAAAGAATCCAAACTGTCTCGAAGGGAGCAACCTAGCAATCCAACCTTCAATTTCCTTAACACCCACGTCAAAACAAGGATTAATAACCCCACATTTGTTCAGCCTATCGTTGAATTCAAAAACAACTTTTCTAGATCTATGATCATTGACAAACTCAAATTCACCAATATAACTATGCTTCTGCAAACCAGAAGAAACTTGATGATAACTTTGGAAGACAACATGATCATGACCTGTTGTTTCCCATGGTTATTTGCATTGTACATGCTCTTAAGACCATCGTCAAAAGACCAACTCTCACCCTCCTTCCAAATTAAAACTTCAAAGGATTTTTGA

mRNA sequence

ATGTCAAAACTCCATAGTGGATGCTCAAAACCATATTCAGTAGAAGAAACTAAGAACTTTGCCTCCAACATTCTTCCTTCTTGCTTCTGCATGTTCCATAATTCCAGCAGAAGTTGTCAACACAAAGAATCCAAACTGTCTCGAAGGGAGCAACCTAGCAATCCAACCTTCAATTTCCTTAACACCCACGTCAAAACAAGGATTAATAACCCCACATTTGTTCAGCCTATCGTTGAATTCAAAAACAACTTTTCTAGATCTATGATCATTGACAAACTCAAATTCACCAATATAACTATGCTTCTGCAAACCAGAAGAAACTTGATGATAACTTTGGAAGACAACATGATCATGACCTGTTGTTTCCCATGGTTATTTGCATTGTACATGCTCTTAAGACCATCGTCAAAAGACCAACTCTCACCCTCCTTCCAAATTAAAACTTCAAAGGATTTTTGA

Coding sequence (CDS)

ATGTCAAAACTCCATAGTGGATGCTCAAAACCATATTCAGTAGAAGAAACTAAGAACTTTGCCTCCAACATTCTTCCTTCTTGCTTCTGCATGTTCCATAATTCCAGCAGAAGTTGTCAACACAAAGAATCCAAACTGTCTCGAAGGGAGCAACCTAGCAATCCAACCTTCAATTTCCTTAACACCCACGTCAAAACAAGGATTAATAACCCCACATTTGTTCAGCCTATCGTTGAATTCAAAAACAACTTTTCTAGATCTATGATCATTGACAAACTCAAATTCACCAATATAACTATGCTTCTGCAAACCAGAAGAAACTTGATGATAACTTTGGAAGACAACATGATCATGACCTGTTGTTTCCCATGGTTATTTGCATTGTACATGCTCTTAAGACCATCGTCAAAAGACCAACTCTCACCCTCCTTCCAAATTAAAACTTCAAAGGATTTTTGA

Protein sequence

MSKLHSGCSKPYSVEETKNFASNILPSCFCMFHNSSRSCQHKESKLSRREQPSNPTFNFLNTHVKTRINNPTFVQPIVEFKNNFSRSMIIDKLKFTNITMLLQTRRNLMITLEDNMIMTCCFPWLFALYMLLRPSSKDQLSPSFQIKTSKDF
BLAST of MELO3C029202.2 vs. NCBI nr
Match: ACJ83878.1 (unknown, partial [Medicago truncatula])

HSP 1 Score: 87.8 bits (216), Expect = 3.4e-14
Identity = 44/72 (61.11%), Postives = 57/72 (79.17%), Query Frame = 0

Query: 31  MFHNSSRSCQHKESKLSRREQPSNPTFNFLNTHVKTRINNPTFVQPIVEFKNNFSRSMII 90
           M HN+SRS Q+  SKLS RE+ S+PTFN L+T +KTR NNPTFVQP ++F N+F RS+II
Sbjct: 1   MIHNTSRSGQNNVSKLSGREKSSSPTFNLLDTDIKTRTNNPTFVQPTIQFNNDFPRSVII 60

Query: 91  DKLKFTNITMLL 103
           + LK +NIT+ L
Sbjct: 61  NILKLSNITVFL 72

BLAST of MELO3C029202.2 vs. NCBI nr
Match: XP_018169502.2 (40s ribosomal protein s22 [[Candida] auris] >KND99778.2 40s ribosomal protein s22 [[Candida] auris])

HSP 1 Score: 59.3 bits (142), Expect = 1.3e-05
Identity = 33/95 (34.74%), Postives = 54/95 (56.84%), Query Frame = 0

Query: 14  VEETKNFASNILPSCFCMFHNSSRSCQHKESKLSRREQPSNPTFNFLNTHVKTRINNPTF 73
           V ET++   N+L S   + H++SR  Q   +K S R+Q   P+ N L+ HV++  N+ T 
Sbjct: 10  VNETQDLTGNMLSSGLLVVHDTSRGGQDDVTKSSGRQQVVGPSLNVLDLHVESWRNDTTL 69

Query: 74  VQPIVEFKNNFSRSMIIDKLKFTNITMLLQTRRNL 109
           VQ   +  NN +RS+++D LK T++ +L      L
Sbjct: 70  VQSTGQSNNNLTRSVVVDVLKLTDVAVLSHNSEEL 104

BLAST of MELO3C029202.2 vs. NCBI nr
Match: EKG01352.1 (hypothetical protein TCSYLVIO_007646 [Trypanosoma cruzi])

HSP 1 Score: 56.6 bits (135), Expect = 8.5e-05
Identity = 29/95 (30.53%), Postives = 55/95 (57.89%), Query Frame = 0

Query: 14  VEETKNFASNILPSCFCMFHNSSRSCQHKESKLSRREQPSNPTFNFLNTHVKTRINNPTF 73
           +EET+N ++++  + F + H++  S +H ++KL+  +   +P F      VK   +    
Sbjct: 30  IEETENLSTSVAGTGFLVIHDTKGSREHHKAKLTAGKNVLHPLFEVRGGAVKAGADGAAL 89

Query: 74  VQPIVEFKNNFSRSMIIDKLKFTNITMLLQTRRNL 109
           V+  VE  +NF+R++I+D LK  N+T+LL   + L
Sbjct: 90  VEAAVEIHHNFTRAVIVDNLKLANVTVLLHHLQKL 124

BLAST of MELO3C029202.2 vs. NCBI nr
Match: XP_018165946.2 (40s ribosomal protein s22 [[Candida] auris] >KND96222.2 40s ribosomal protein s22 [[Candida] auris])

HSP 1 Score: 53.5 bits (127), Expect = 7.2e-04
Identity = 30/81 (37.04%), Postives = 49/81 (60.49%), Query Frame = 0

Query: 24  ILPSCFCMFHNSSRSCQHKESKLSRREQPSNPTFNFLNTHVKTRINNPTFVQPIVEFKNN 83
           +L S   + H++SRS Q   ++ S R+Q  +P+ N LN  VK+  N+ T VQ   +  NN
Sbjct: 1   MLSSGLLVVHDTSRSSQDNITESSSRQQVVSPSLNILNLDVKSWGNDTTLVQSTSQSNNN 60

Query: 84  FSRSMIIDKLKFTNITMLLQT 105
            +RS++I+  K TN+ ++L T
Sbjct: 61  LTRSVVINVFKLTNVALMLVT 81

BLAST of MELO3C029202.2 vs. TrEMBL
Match: tr|B7FGJ9|B7FGJ9_MEDTR (Uncharacterized protein (Fragment) OS=Medicago truncatula OX=3880 PE=2 SV=1)

HSP 1 Score: 87.8 bits (216), Expect = 2.3e-14
Identity = 44/72 (61.11%), Postives = 57/72 (79.17%), Query Frame = 0

Query: 31  MFHNSSRSCQHKESKLSRREQPSNPTFNFLNTHVKTRINNPTFVQPIVEFKNNFSRSMII 90
           M HN+SRS Q+  SKLS RE+ S+PTFN L+T +KTR NNPTFVQP ++F N+F RS+II
Sbjct: 1   MIHNTSRSGQNNVSKLSGREKSSSPTFNLLDTDIKTRTNNPTFVQPTIQFNNDFPRSVII 60

Query: 91  DKLKFTNITMLL 103
           + LK +NIT+ L
Sbjct: 61  NILKLSNITVFL 72

BLAST of MELO3C029202.2 vs. TrEMBL
Match: tr|A0A0L0P0H3|A0A0L0P0H3_CANAR (40s ribosomal protein s22 OS=Candida auris OX=498019 GN=QG37_03197 PE=4 SV=1)

HSP 1 Score: 64.3 bits (155), Expect = 2.7e-07
Identity = 35/95 (36.84%), Postives = 56/95 (58.95%), Query Frame = 0

Query: 14  VEETKNFASNILPSCFCMFHNSSRSCQHKESKLSRREQPSNPTFNFLNTHVKTRINNPTF 73
           V ET++   N+L S   + H++SR  Q   +KLS R+Q   P+ N L+ HV++  N+ T 
Sbjct: 10  VNETQDLTGNMLSSGLLVVHDTSRGGQDDVTKLSGRQQVVGPSLNVLDLHVESWRNDTTL 69

Query: 74  VQPIVEFKNNFSRSMIIDKLKFTNITMLLQTRRNL 109
           VQ   +  NN +RS+++D LK T++ +LL     L
Sbjct: 70  VQSTGQLNNNLTRSVVVDVLKLTDVAVLLHNLEEL 104

BLAST of MELO3C029202.2 vs. TrEMBL
Match: tr|A0A0A9CUT9|A0A0A9CUT9_ARUDO (40S ribosomal protein S15a OS=Arundo donax OX=35708 PE=4 SV=1)

HSP 1 Score: 59.3 bits (142), Expect = 8.6e-06
Identity = 29/78 (37.18%), Postives = 49/78 (62.82%), Query Frame = 0

Query: 31  MFHNSSRSCQHKESKLSRREQPSNPTFNFLNTHVKTRINNPTFVQPIVEFKNNFSRSMII 90
           M H++SR CQ    KL+  ++P  P  N L+T+++TR ++P  V+P V+F ++   +M+I
Sbjct: 1   MIHDASRGCQDDVPKLTGWKKPGCPALNLLHTNIETRADHPALVKPPVQFNHDLPGTMVI 60

Query: 91  DKLKFTNITMLLQTRRNL 109
           + LK TN+ M L   + L
Sbjct: 61  NILKLTNVAMALHDDQEL 78

BLAST of MELO3C029202.2 vs. TrEMBL
Match: tr|A0A0L0NPY1|A0A0L0NPY1_CANAR (40s ribosomal protein s22 OS=Candida auris OX=498019 GN=QG37_07349 PE=4 SV=1)

HSP 1 Score: 56.6 bits (135), Expect = 5.6e-05
Identity = 31/81 (38.27%), Postives = 50/81 (61.73%), Query Frame = 0

Query: 24  ILPSCFCMFHNSSRSCQHKESKLSRREQPSNPTFNFLNTHVKTRINNPTFVQPIVEFKNN 83
           +L S   + H++SRS Q   ++LS R+Q  +P+ N LN  VK+  N+ T VQ   +  NN
Sbjct: 1   MLSSGLLVVHDTSRSSQDNITELSSRQQVVSPSLNILNLDVKSWGNDTTLVQSTSQLNNN 60

Query: 84  FSRSMIIDKLKFTNITMLLQT 105
            +RS++I+  K TN+ ++L T
Sbjct: 61  LTRSVVINVFKLTNVALMLVT 81

BLAST of MELO3C029202.2 vs. TrEMBL
Match: tr|A0A1J3IDU5|A0A1J3IDU5_NOCCA (Uncharacterized protein (Fragment) OS=Noccaea caerulescens OX=107243 GN=MP_TR169_c8_g1_i1_g.435 PE=4 SV=1)

HSP 1 Score: 56.6 bits (135), Expect = 5.6e-05
Identity = 28/63 (44.44%), Postives = 41/63 (65.08%), Query Frame = 0

Query: 46  LSRREQPSNPTFNFLNTHVKTRINNPTFVQPIVEFKNNFSRSMIIDKLKFTNITMLLQTR 105
           LS R++ S P FN LN+ +KTR N+ TFVQ  V+  +N +R ++ID LK T++T+ L   
Sbjct: 1   LSGRKKTSGPAFNVLNSDIKTRTNDTTFVQSSVKLNHNLARPVVIDVLKLTDVTVFLHDN 60

Query: 106 RNL 109
             L
Sbjct: 61  EKL 63

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
ACJ83878.13.4e-1461.11unknown, partial [Medicago truncatula][more]
XP_018169502.21.3e-0534.7440s ribosomal protein s22 [[Candida] auris] >KND99778.2 40s ribosomal protein s2... [more]
EKG01352.18.5e-0530.53hypothetical protein TCSYLVIO_007646 [Trypanosoma cruzi][more]
XP_018165946.27.2e-0437.0440s ribosomal protein s22 [[Candida] auris] >KND96222.2 40s ribosomal protein s2... [more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
tr|B7FGJ9|B7FGJ9_MEDTR2.3e-1461.11Uncharacterized protein (Fragment) OS=Medicago truncatula OX=3880 PE=2 SV=1[more]
tr|A0A0L0P0H3|A0A0L0P0H3_CANAR2.7e-0736.8440s ribosomal protein s22 OS=Candida auris OX=498019 GN=QG37_03197 PE=4 SV=1[more]
tr|A0A0A9CUT9|A0A0A9CUT9_ARUDO8.6e-0637.1840S ribosomal protein S15a OS=Arundo donax OX=35708 PE=4 SV=1[more]
tr|A0A0L0NPY1|A0A0L0NPY1_CANAR5.6e-0538.2740s ribosomal protein s22 OS=Candida auris OX=498019 GN=QG37_07349 PE=4 SV=1[more]
tr|A0A1J3IDU5|A0A1J3IDU5_NOCCA5.6e-0544.44Uncharacterized protein (Fragment) OS=Noccaea caerulescens OX=107243 GN=MP_TR169... [more]
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005840 ribosome
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C029202.2.1MELO3C029202.2.1mRNA