MELO3C029140.2 (gene) Melon (DHL92) v3.6.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C029140.2
Type	gene
Organism	Cucumis melo (Melon (DHL92) v3.6.1)
Description	zinc finger CCCH domain-containing protein 62-like
Location	chr01 : 25270141 .. 25270596 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAATGCAGGTGATGTTTGTAGAGGGAATACTGTTCTGTTCACTCAGAAAGTTTATGTAAAGTACCCAAACAACTTACTTTTCCACCACTATTCTTGTGCTATATATTTTGGATTATAGTTCTAATTCTTGTAGTTTGCTTCTTAATAGGTTTGACAAAGTAACTAGGCATGGAGGGCTCATAAGGAAGAGAACTGTAGCAGGGAGGGTAGTAAAGGAGAGCTATGGTGCAAGCAAACAACAGCATACTTTTACTGTAAGGCTGCTTTTCTACTCAAGTAATCATTTTCTCCAATCTCCATACTGTAATTCAAATTGTTTATGAATTTTAAGATCAATTTGTTTGCATCTAATATTCACTGCAATGATTATGTAGCAGTCAGCAAGTTCTTTCTTTTCTATGTTCTTTGGCTTATATATCTTTCCATTTGGGACTCATGTTTCCAACACTTGTGA

mRNA sequence

ATGAATGCAGGTGATGTTTGTAGAGGGAATACTGTTCTGTTCACTCAGAAAGTTTATGTAAAGTTTGACAAAGTAACTAGGCATGGAGGGCTCATAAGGAAGAGAACTGTAGCAGGGAGGGTAGTAAAGGAGAGCTATGGTGCAAGCAAACAACAGCATACTTTTACTATCAATTTGTTTGCATCTAATATTCACTGCAATGATTATGTAGCAGTCAGCAAGTTCTTTCTTTTCTATGTTCTTTGGCTTATATATCTTTCCATTTGGGACTCATGTTTCCAACACTTGTGA

Coding sequence (CDS)

ATGAATGCAGGTGATGTTTGTAGAGGGAATACTGTTCTGTTCACTCAGAAAGTTTATGTAAAGTTTGACAAAGTAACTAGGCATGGAGGGCTCATAAGGAAGAGAACTGTAGCAGGGAGGGTAGTAAAGGAGAGCTATGGTGCAAGCAAACAACAGCATACTTTTACTATCAATTTGTTTGCATCTAATATTCACTGCAATGATTATGTAGCAGTCAGCAAGTTCTTTCTTTTCTATGTTCTTTGGCTTATATATCTTTCCATTTGGGACTCATGTTTCCAACACTTGTGA

Protein sequence

MNAGDVCRGNTVLFTQKVYVKFDKVTRHGGLIRKRTVAGRVVKESYGASKQQHTFTINLFASNIHCNDYVAVSKFFLFYVLWLIYLSIWDSCFQHL

Homology

[Close]

BLAST of MELO3C029140.2 vs. NCBI nr
Match: KGN62051.1 (hypothetical protein Csa_2G292810 [Cucumis sativus])

HSP 1 Score: 106.7 bits (265), Expect = 4.5e-20
Identity = 51/59 (86.44%), Postives = 54/59 (91.53%), Query Frame = 0


Query: 4   GDVCRGNTVLFTQKVYVKFDKVTRHGGLIRKRTVAGRVVKESYGASKQQHTFTINLFAS 63
           GDVCRG+TVLFTQKVY KFDKVTRHGGLI KRTVAGRVVKESYGASKQQHTFT+ +  S
Sbjct: 140 GDVCRGDTVLFTQKVYAKFDKVTRHGGLIGKRTVAGRVVKESYGASKQQHTFTVEVLWS 198

[Close]

BLAST of MELO3C029140.2 vs. NCBI nr
Match: XP_004148070.2 (PREDICTED: zinc finger CCCH domain-containing protein 62 isoform X1 [Cucumis sativus])

HSP 1 Score: 106.7 bits (265), Expect = 4.5e-20
Identity = 51/59 (86.44%), Postives = 54/59 (91.53%), Query Frame = 0


Query: 4   GDVCRGNTVLFTQKVYVKFDKVTRHGGLIRKRTVAGRVVKESYGASKQQHTFTINLFAS 63
           GDVCRG+TVLFTQKVY KFDKVTRHGGLI KRTVAGRVVKESYGASKQQHTFT+ +  S
Sbjct: 140 GDVCRGDTVLFTQKVYAKFDKVTRHGGLIGKRTVAGRVVKESYGASKQQHTFTVEVLWS 198

[Close]

BLAST of MELO3C029140.2 vs. NCBI nr
Match: XP_016902186.1 (PREDICTED: zinc finger CCCH domain-containing protein 62-like isoform X3 [Cucumis melo])

HSP 1 Score: 106.3 bits (264), Expect = 5.9e-20
Identity = 50/56 (89.29%), Postives = 53/56 (94.64%), Query Frame = 0


Query: 4   GDVCRGNTVLFTQKVYVKFDKVTRHGGLIRKRTVAGRVVKESYGASKQQHTFTINL 60
           GDVCRG+TVLFTQKVY KFDKVTRHGGLI KRTVAGRVVKESYGASKQQHTFT+ +
Sbjct: 177 GDVCRGDTVLFTQKVYAKFDKVTRHGGLIGKRTVAGRVVKESYGASKQQHTFTVEV 232

[Close]

BLAST of MELO3C029140.2 vs. NCBI nr
Match: XP_016902184.1 (PREDICTED: zinc finger CCCH domain-containing protein 62-like isoform X1 [Cucumis melo])

HSP 1 Score: 106.3 bits (264), Expect = 5.9e-20
Identity = 50/56 (89.29%), Postives = 53/56 (94.64%), Query Frame = 0


Query: 4   GDVCRGNTVLFTQKVYVKFDKVTRHGGLIRKRTVAGRVVKESYGASKQQHTFTINL 60
           GDVCRG+TVLFTQKVY KFDKVTRHGGLI KRTVAGRVVKESYGASKQQHTFT+ +
Sbjct: 177 GDVCRGDTVLFTQKVYAKFDKVTRHGGLIGKRTVAGRVVKESYGASKQQHTFTVEV 232

[Close]

BLAST of MELO3C029140.2 vs. NCBI nr
Match: XP_011649364.1 (PREDICTED: zinc finger CCCH domain-containing protein 62 isoform X3 [Cucumis sativus])

HSP 1 Score: 105.5 bits (262), Expect = 1.0e-19
Identity = 50/54 (92.59%), Postives = 52/54 (96.30%), Query Frame = 0


Query: 4   GDVCRGNTVLFTQKVYVKFDKVTRHGGLIRKRTVAGRVVKESYGASKQQHTFTI 58
           GDVCRG+TVLFTQKVY KFDKVTRHGGLI KRTVAGRVVKESYGASKQQHTFT+
Sbjct: 140 GDVCRGDTVLFTQKVYAKFDKVTRHGGLIGKRTVAGRVVKESYGASKQQHTFTL 193

[Close]

BLAST of MELO3C029140.2 vs. TAIR10
Match: AT5G66840.1 (SAP domain-containing protein)

HSP 1 Score: 79.7 bits (195), Expect = 1.1e-15
Identity = 35/56 (62.50%), Postives = 48/56 (85.71%), Query Frame = 0


Query: 4   GDVCRGNTVLFTQKVYVKFDKVTRHGGLIRKRTVAGRVVKESYGASKQQHTFTINL 60
           GDVC+G+ VLFTQKV+ K++K+ + G ++ +RTVAG+VVKESYG +KQQHTFTI +
Sbjct: 146 GDVCKGDIVLFTQKVHHKYEKMKKSGNIMGRRTVAGQVVKESYGTAKQQHTFTIEV 201

[Close]

BLAST of MELO3C029140.2 vs. Swiss-Prot
Match: sp|Q338N2|C3H62_ORYSJ (Zinc finger CCCH domain-containing protein 62 OS=Oryza sativa subsp. japonica OX=39947 GN=Os10g0391300 PE=4 SV=2)

HSP 1 Score: 60.1 bits (144), Expect = 1.6e-08
Identity = 30/61 (49.18%), Postives = 39/61 (63.93%), Query Frame = 0


Query: 4   GDVCRGNTVLFTQKVYVKFDKVTR--HGGLIRKRTVAGRVVKESYGASKQQHTFTINLFA 63
           GD C+G+ V+F Q +Y +     R   G L  +RT AGR++KESYG  KQQHTFTI +  
Sbjct: 187 GDSCKGDVVVFEQNIYKRKKGAPRGVKGHLCGQRTNAGRIIKESYGTKKQQHTFTIEILW 246

[Close]

BLAST of MELO3C029140.2 vs. TrEMBL
Match: tr|A0A0A0LQ19|A0A0A0LQ19_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G292810 PE=4 SV=1)

HSP 1 Score: 106.7 bits (265), Expect = 3.0e-20
Identity = 51/59 (86.44%), Postives = 54/59 (91.53%), Query Frame = 0


Query: 4   GDVCRGNTVLFTQKVYVKFDKVTRHGGLIRKRTVAGRVVKESYGASKQQHTFTINLFAS 63
           GDVCRG+TVLFTQKVY KFDKVTRHGGLI KRTVAGRVVKESYGASKQQHTFT+ +  S
Sbjct: 140 GDVCRGDTVLFTQKVYAKFDKVTRHGGLIGKRTVAGRVVKESYGASKQQHTFTVEVLWS 198

[Close]

BLAST of MELO3C029140.2 vs. TrEMBL
Match: tr|A0A1S4E1T3|A0A1S4E1T3_CUCME (zinc finger CCCH domain-containing protein 62-like isoform X3 OS=Cucumis melo OX=3656 GN=LOC103497448 PE=4 SV=1)

HSP 1 Score: 106.3 bits (264), Expect = 3.9e-20
Identity = 50/56 (89.29%), Postives = 53/56 (94.64%), Query Frame = 0


Query: 4   GDVCRGNTVLFTQKVYVKFDKVTRHGGLIRKRTVAGRVVKESYGASKQQHTFTINL 60
           GDVCRG+TVLFTQKVY KFDKVTRHGGLI KRTVAGRVVKESYGASKQQHTFT+ +
Sbjct: 177 GDVCRGDTVLFTQKVYAKFDKVTRHGGLIGKRTVAGRVVKESYGASKQQHTFTVEV 232

[Close]

BLAST of MELO3C029140.2 vs. TrEMBL
Match: tr|A0A1S4E1S9|A0A1S4E1S9_CUCME (zinc finger CCCH domain-containing protein 62-like isoform X1 OS=Cucumis melo OX=3656 GN=LOC103497448 PE=4 SV=1)

HSP 1 Score: 106.3 bits (264), Expect = 3.9e-20
Identity = 50/56 (89.29%), Postives = 53/56 (94.64%), Query Frame = 0


Query: 4   GDVCRGNTVLFTQKVYVKFDKVTRHGGLIRKRTVAGRVVKESYGASKQQHTFTINL 60
           GDVCRG+TVLFTQKVY KFDKVTRHGGLI KRTVAGRVVKESYGASKQQHTFT+ +
Sbjct: 177 GDVCRGDTVLFTQKVYAKFDKVTRHGGLIGKRTVAGRVVKESYGASKQQHTFTVEV 232

[Close]

BLAST of MELO3C029140.2 vs. TrEMBL
Match: tr|A0A1S4E1T6|A0A1S4E1T6_CUCME (zinc finger CCCH domain-containing protein 62-like isoform X4 OS=Cucumis melo OX=3656 GN=LOC103497448 PE=4 SV=1)

HSP 1 Score: 105.5 bits (262), Expect = 6.6e-20
Identity = 50/54 (92.59%), Postives = 52/54 (96.30%), Query Frame = 0


Query: 4   GDVCRGNTVLFTQKVYVKFDKVTRHGGLIRKRTVAGRVVKESYGASKQQHTFTI 58
           GDVCRG+TVLFTQKVY KFDKVTRHGGLI KRTVAGRVVKESYGASKQQHTFT+
Sbjct: 177 GDVCRGDTVLFTQKVYAKFDKVTRHGGLIGKRTVAGRVVKESYGASKQQHTFTL 230

[Close]

BLAST of MELO3C029140.2 vs. TrEMBL
Match: tr|A0A1S4E2I3|A0A1S4E2I3_CUCME (zinc finger CCCH domain-containing protein 62-like isoform X2 OS=Cucumis melo OX=3656 GN=LOC103497448 PE=4 SV=1)

HSP 1 Score: 104.0 bits (258), Expect = 1.9e-19
Identity = 49/55 (89.09%), Postives = 52/55 (94.55%), Query Frame = 0


Query: 5   DVCRGNTVLFTQKVYVKFDKVTRHGGLIRKRTVAGRVVKESYGASKQQHTFTINL 60
           DVCRG+TVLFTQKVY KFDKVTRHGGLI KRTVAGRVVKESYGASKQQHTFT+ +
Sbjct: 176 DVCRGDTVLFTQKVYAKFDKVTRHGGLIGKRTVAGRVVKESYGASKQQHTFTVEV 230

The following BLAST results are available for this feature:

BLAST of MELO3C029140.2 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN62051.1	4.5e-20	86.44	hypothetical protein Csa_2G292810 [Cucumis sativus]	[more]
XP_004148070.2	4.5e-20	86.44	PREDICTED: zinc finger CCCH domain-containing protein 62 isoform X1 [Cucumis sat...	[more]
XP_016902186.1	5.9e-20	89.29	PREDICTED: zinc finger CCCH domain-containing protein 62-like isoform X3 [Cucumi...	[more]
XP_016902184.1	5.9e-20	89.29	PREDICTED: zinc finger CCCH domain-containing protein 62-like isoform X1 [Cucumi...	[more]
XP_011649364.1	1.0e-19	92.59	PREDICTED: zinc finger CCCH domain-containing protein 62 isoform X3 [Cucumis sat...	[more]

BLAST of MELO3C029140.2 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G66840.1	1.1e-15	62.50	SAP domain-containing protein	[more]

BLAST of MELO3C029140.2 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q338N2\|C3H62_ORYSJ	1.6e-08	49.18	Zinc finger CCCH domain-containing protein 62 OS=Oryza sativa subsp. japonica OX...	[more]

BLAST of MELO3C029140.2 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0LQ19\|A0A0A0LQ19_CUCSA	3.0e-20	86.44	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G292810 PE=4 SV=1	[more]
tr\|A0A1S4E1T3\|A0A1S4E1T3_CUCME	3.9e-20	89.29	zinc finger CCCH domain-containing protein 62-like isoform X3 OS=Cucumis melo OX...	[more]
tr\|A0A1S4E1S9\|A0A1S4E1S9_CUCME	3.9e-20	89.29	zinc finger CCCH domain-containing protein 62-like isoform X1 OS=Cucumis melo OX...	[more]
tr\|A0A1S4E1T6\|A0A1S4E1T6_CUCME	6.6e-20	92.59	zinc finger CCCH domain-containing protein 62-like isoform X4 OS=Cucumis melo OX...	[more]
tr\|A0A1S4E2I3\|A0A1S4E2I3_CUCME	1.9e-19	89.09	zinc finger CCCH domain-containing protein 62-like isoform X2 OS=Cucumis melo OX...	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0046872	metal ion binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C029140.2.1	MELO3C029140.2.1	mRNA

InterPro

Analysis Name: InterPro Annotations of melon v3.6.1
Date Performed: 2018-09-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR35323	FAMILY NOT NAMED	coord: 4..60

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
MELO3C029140.2	Cucumber (Gy14) v2	cgybmedB477
MELO3C029140.2	Cucumber (Gy14) v1	cgymedB081
MELO3C029140.2	Cucurbita maxima (Rimu)	cmamedB374
MELO3C029140.2	Cucurbita maxima (Rimu)	cmamedB936
MELO3C029140.2	Cucurbita moschata (Rifu)	cmomedB360
MELO3C029140.2	Cucurbita moschata (Rifu)	cmomedB369
MELO3C029140.2	Cucurbita moschata (Rifu)	cmomedB925
MELO3C029140.2	Cucurbita pepo (Zucchini)	cpemedB352
MELO3C029140.2	Wild cucumber (PI 183967)	cpimedB513
MELO3C029140.2	Wild cucumber (PI 183967)	cpimedB535
MELO3C029140.2	Cucumber (Chinese Long) v2	cumedB520
MELO3C029140.2	Bottle gourd (USVL1VR-Ls)	lsimedB208
MELO3C029140.2	Watermelon (Charleston Gray)	medwcgB165
MELO3C029140.2	Watermelon (97103) v1	medwmB190
MELO3C029140.2	Silver-seed gourd	carmedB0435
MELO3C029140.2	Silver-seed gourd	carmedB0436
MELO3C029140.2	Cucumber (Chinese Long) v3	cucmedB548
MELO3C029140.2	Watermelon (97103) v2	medwmbB203
MELO3C029140.2	Wax gourd	medwgoB263