MELO3C029116.2 (gene) Melon (DHL92) v3.6.1

Overview
NameMELO3C029116.2
Typegene
OrganismCucumis melo (Melon (DHL92) v3.6.1)
DescriptionMyb/SANT-like DNA-binding domain protein
Locationchr01 : 23717984 .. 23718388 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
AACTGTTAAATTGTGAAATTACTTACGTACTCCATGTATTTTTTCTAATTTCTCATTCTCAGTATGTCAACCTCAAATCGTGGCCCGAGACATGTCTGGACGAAGGAGGAGGAGGGCACTCTTGTGGAATGTTTAATGGAGTTGGTGTCAATGGGGGGATGGATATCAGATAATGGTACGTTCCCCCCAGGTTACCTTGCGCAGTTGGTACGCATGATGGCGGAGAAACTATCTGGATGTCAGGTCCGAGCAACAACTGTCATTGATTGTAGAATTAAGACACTGAAGCGAACATTCCAAGCCATTGTCGAAATGCGGGGGCCAGCGTGCAGTGGCTTTGGATGGAACGATGAAGAGAAACGTATCATTGCGGAGAAGGAATTATTTGATAATTCCGGCCGTTAG

mRNA sequence

AACTGTTAAATTGTGAAATTACTTACGTACTCCATGTATTTTTTCTAATTTCTCATTCTCAGTATGTCAACCTCAAATCGTGGCCCGAGACATGTCTGGACGAAGGAGGAGGAGGGCACTCTTGTGGAATGTTTAATGGAGTTGGTGTCAATGGGGGGATGGATATCAGATAATGGTACGTTCCCCCCAGGTTACCTTGCGCAGTTGGTACGCATGATGGCGGAGAAACTATCTGGATGTCAGGTCCGAGCAACAACTGTCATTGATTGTAGAATTAAGACACTGAAGCGAACATTCCAAGCCATTGTCGAAATGCGGGGGCCAGCGTGCAGTGGCTTTGGATGGAACGATGAAGAGAAACGTATCATTGCGGAGAAGGAATTATTTGATAATTCCGGCCGTTAG

Coding sequence (CDS)

ATGTCAACCTCAAATCGTGGCCCGAGACATGTCTGGACGAAGGAGGAGGAGGGCACTCTTGTGGAATGTTTAATGGAGTTGGTGTCAATGGGGGGATGGATATCAGATAATGGTACGTTCCCCCCAGGTTACCTTGCGCAGTTGGTACGCATGATGGCGGAGAAACTATCTGGATGTCAGGTCCGAGCAACAACTGTCATTGATTGTAGAATTAAGACACTGAAGCGAACATTCCAAGCCATTGTCGAAATGCGGGGGCCAGCGTGCAGTGGCTTTGGATGGAACGATGAAGAGAAACGTATCATTGCGGAGAAGGAATTATTTGATAATTCCGGCCGTTAG

Protein sequence

MSTSNRGPRHVWTKEEEGTLVECLMELVSMGGWISDNGTFPPGYLAQLVRMMAEKLSGCQVRATTVIDCRIKTLKRTFQAIVEMRGPACSGFGWNDEEKRIIAEKELFDNSGR
Homology
[Close]
BLAST of MELO3C029116.2 vs. NCBI nr
Match: ADN33754.1 (retrotransposon protein [Cucumis melo subsp. melo])

HSP 1 Score: 171.4 bits (433), Expect = 1.8e-39
Identity = 81/88 (92.05%), Postives = 82/88 (93.18%), Query Frame = 0 

Query: 23  CLMELVSMGGWISDNGTFPPGYLAQLVRMMAEKLSGCQVRATTVIDCRIKTLKRTFQAIV 82
           C MELVSMGGW SDNGTF PGYLAQLVRMMAEKLSGCQVRATTVIDCRIKTLKRTFQAI 
Sbjct: 340 CGMELVSMGGWKSDNGTFRPGYLAQLVRMMAEKLSGCQVRATTVIDCRIKTLKRTFQAIA 399

Query: 83  EMRGPACSGFGWNDEEKRIIAEKELFDN 111
           EM GPACSGFGWNDEEK I+AEKELFDN
Sbjct: 400 EMLGPACSGFGWNDEEKCIVAEKELFDN 427

[Close]
BLAST of MELO3C029116.2 vs. NCBI nr
Match: XP_008441954.1 (PREDICTED: uncharacterized protein LOC103485953 [Cucumis melo])

HSP 1 Score: 163.7 bits (413), Expect = 3.7e-37
Identity = 71/110 (64.55%), Postives = 90/110 (81.82%), Query Frame = 0 

Query: 1   MSTSNRGPRHVWTKEEEGTLVECLMELVSMGGWISDNGTFPPGYLAQLVRMMAEKLSGCQ 60
           M++ +R P+H WTKEEE   VECL+ELVS GGW SDNGTF PGYLAQL RMMAEKL G  
Sbjct: 1   MASLSRAPKHTWTKEEEEKFVECLVELVSSGGWRSDNGTFQPGYLAQLQRMMAEKLPGTN 60

Query: 61  VRATTVIDCRIKTLKRTFQAIVEMRGPACSGFGWNDEEKRIIAEKELFDN 111
           ++ ++ IDC +K+LK+T+ AI EMRGP+CSGFGWN+E + IIAE++LFD+
Sbjct: 61  IQESSTIDCHVKSLKKTYHAIAEMRGPSCSGFGWNEEFQCIIAERDLFDS 110

[Close]
BLAST of MELO3C029116.2 vs. NCBI nr
Match: ADN34114.1 (retrotransposon protein [Cucumis melo subsp. melo])

HSP 1 Score: 158.7 bits (400), Expect = 1.2e-35
Identity = 73/110 (66.36%), Postives = 88/110 (80.00%), Query Frame = 0 

Query: 1   MSTSNRGPRHVWTKEEEGTLVECLMELVSMGGWISDNGTFPPGYLAQLVRMMAEKLSGCQ 60
           M++S+R P+H WTKEEE  LVECL+ELV+ GGW SDNGTF PGYL QL RMMA K+ G  
Sbjct: 356 MTSSSRLPKHTWTKEEEAGLVECLVELVNAGGWRSDNGTFRPGYLNQLARMMAFKIPGSN 415

Query: 61  VRATTVIDCRIKTLKRTFQAIVEMRGPACSGFGWNDEEKRIIAEKELFDN 111
           + A+T ID RIK +KR F A+ EMRGP CSGFGWNDE+K I+AEKE+FD+
Sbjct: 416 IHAST-IDSRIKLMKRMFHALAEMRGPNCSGFGWNDEKKCIVAEKEVFDD 464

[Close]
BLAST of MELO3C029116.2 vs. NCBI nr
Match: XP_008466949.1 (PREDICTED: uncharacterized protein LOC103504332, partial [Cucumis melo])

HSP 1 Score: 145.6 bits (366), Expect = 1.0e-31
Identity = 70/110 (63.64%), Postives = 85/110 (77.27%), Query Frame = 0 

Query: 1   MSTSNRGPRHVWTKEEEGTLVECLMELVSMGGWISDNGTFPPGYLAQLVRMMAEKLSGCQ 60
           M++S+R P+H WTKEEE  LV    ELV++GGW SDNGTF PGYL QL RMMA K+ G  
Sbjct: 1   MTSSSRLPKHTWTKEEEAGLV----ELVNVGGWRSDNGTFRPGYLNQLARMMAFKIPGSN 60

Query: 61  VRATTVIDCRIKTLKRTFQAIVEMRGPACSGFGWNDEEKRIIAEKELFDN 111
           + A+T ID RIK +KR F A+ EMRGP CSGFGWNDE+K I+AEKE+FD+
Sbjct: 61  IHAST-IDSRIKLMKRMFHALAEMRGPNCSGFGWNDEKKCIVAEKEVFDD 105

[Close]
BLAST of MELO3C029116.2 vs. NCBI nr
Match: XP_008459131.1 (PREDICTED: uncharacterized protein LOC103498331 [Cucumis melo])

HSP 1 Score: 145.2 bits (365), Expect = 1.3e-31
Identity = 70/106 (66.04%), Postives = 82/106 (77.36%), Query Frame = 0 

Query: 1   MSTSNRGPRHVWTKEEEGTLVECLMELVSMGGWISDNGTFPPGYLAQLVRMMAEKLSGCQ 60
           M++S+R P+H WTKEEE +LV    ELV+ GGW SDNGTF PGYL QL RMMA K+ GC 
Sbjct: 1   MTSSSRLPKHTWTKEEEASLV----ELVNAGGWRSDNGTFHPGYLNQLARMMAFKIPGCN 60

Query: 61  VRATTVIDCRIKTLKRTFQAIVEMRGPACSGFGWNDEEKRIIAEKE 107
           + A+T ID RIK LKR F A+ EMRGP CSGFGWNDE+K I+AEKE
Sbjct: 61  IHAST-IDSRIKLLKRMFHALAEMRGPNCSGFGWNDEKKCIVAEKE 101

[Close]
BLAST of MELO3C029116.2 vs. TrEMBL
Match: tr|E5GBB2|E5GBB2_CUCME (Retrotransposon protein OS=Cucumis melo subsp. melo OX=412675 PE=4 SV=1)

HSP 1 Score: 171.4 bits (433), Expect = 1.2e-39
Identity = 81/88 (92.05%), Postives = 82/88 (93.18%), Query Frame = 0 

Query: 23  CLMELVSMGGWISDNGTFPPGYLAQLVRMMAEKLSGCQVRATTVIDCRIKTLKRTFQAIV 82
           C MELVSMGGW SDNGTF PGYLAQLVRMMAEKLSGCQVRATTVIDCRIKTLKRTFQAI 
Sbjct: 340 CGMELVSMGGWKSDNGTFRPGYLAQLVRMMAEKLSGCQVRATTVIDCRIKTLKRTFQAIA 399

Query: 83  EMRGPACSGFGWNDEEKRIIAEKELFDN 111
           EM GPACSGFGWNDEEK I+AEKELFDN
Sbjct: 400 EMLGPACSGFGWNDEEKCIVAEKELFDN 427

[Close]
BLAST of MELO3C029116.2 vs. TrEMBL
Match: tr|A0A1S3B4L3|A0A1S3B4L3_CUCME (uncharacterized protein LOC103485953 OS=Cucumis melo OX=3656 GN=LOC103485953 PE=4 SV=1)

HSP 1 Score: 163.7 bits (413), Expect = 2.4e-37
Identity = 71/110 (64.55%), Postives = 90/110 (81.82%), Query Frame = 0 

Query: 1   MSTSNRGPRHVWTKEEEGTLVECLMELVSMGGWISDNGTFPPGYLAQLVRMMAEKLSGCQ 60
           M++ +R P+H WTKEEE   VECL+ELVS GGW SDNGTF PGYLAQL RMMAEKL G  
Sbjct: 1   MASLSRAPKHTWTKEEEEKFVECLVELVSSGGWRSDNGTFQPGYLAQLQRMMAEKLPGTN 60

Query: 61  VRATTVIDCRIKTLKRTFQAIVEMRGPACSGFGWNDEEKRIIAEKELFDN 111
           ++ ++ IDC +K+LK+T+ AI EMRGP+CSGFGWN+E + IIAE++LFD+
Sbjct: 61  IQESSTIDCHVKSLKKTYHAIAEMRGPSCSGFGWNEEFQCIIAERDLFDS 110

[Close]
BLAST of MELO3C029116.2 vs. TrEMBL
Match: tr|E5GCB5|E5GCB5_CUCME (Retrotransposon protein OS=Cucumis melo subsp. melo OX=412675 PE=4 SV=1)

HSP 1 Score: 158.7 bits (400), Expect = 7.8e-36
Identity = 73/110 (66.36%), Postives = 88/110 (80.00%), Query Frame = 0 

Query: 1   MSTSNRGPRHVWTKEEEGTLVECLMELVSMGGWISDNGTFPPGYLAQLVRMMAEKLSGCQ 60
           M++S+R P+H WTKEEE  LVECL+ELV+ GGW SDNGTF PGYL QL RMMA K+ G  
Sbjct: 356 MTSSSRLPKHTWTKEEEAGLVECLVELVNAGGWRSDNGTFRPGYLNQLARMMAFKIPGSN 415

Query: 61  VRATTVIDCRIKTLKRTFQAIVEMRGPACSGFGWNDEEKRIIAEKELFDN 111
           + A+T ID RIK +KR F A+ EMRGP CSGFGWNDE+K I+AEKE+FD+
Sbjct: 416 IHAST-IDSRIKLMKRMFHALAEMRGPNCSGFGWNDEKKCIVAEKEVFDD 464

[Close]
BLAST of MELO3C029116.2 vs. TrEMBL
Match: tr|A0A1S3CTN6|A0A1S3CTN6_CUCME (uncharacterized protein LOC103504332 OS=Cucumis melo OX=3656 GN=LOC103504332 PE=4 SV=1)

HSP 1 Score: 145.6 bits (366), Expect = 6.8e-32
Identity = 70/110 (63.64%), Postives = 85/110 (77.27%), Query Frame = 0 

Query: 1   MSTSNRGPRHVWTKEEEGTLVECLMELVSMGGWISDNGTFPPGYLAQLVRMMAEKLSGCQ 60
           M++S+R P+H WTKEEE  LV    ELV++GGW SDNGTF PGYL QL RMMA K+ G  
Sbjct: 1   MTSSSRLPKHTWTKEEEAGLV----ELVNVGGWRSDNGTFRPGYLNQLARMMAFKIPGSN 60

Query: 61  VRATTVIDCRIKTLKRTFQAIVEMRGPACSGFGWNDEEKRIIAEKELFDN 111
           + A+T ID RIK +KR F A+ EMRGP CSGFGWNDE+K I+AEKE+FD+
Sbjct: 61  IHAST-IDSRIKLMKRMFHALAEMRGPNCSGFGWNDEKKCIVAEKEVFDD 105

[Close]
BLAST of MELO3C029116.2 vs. TrEMBL
Match: tr|A0A1S3C8Z4|A0A1S3C8Z4_CUCME (uncharacterized protein LOC103498331 OS=Cucumis melo OX=3656 GN=LOC103498331 PE=4 SV=1)

HSP 1 Score: 145.2 bits (365), Expect = 8.9e-32
Identity = 70/106 (66.04%), Postives = 82/106 (77.36%), Query Frame = 0 

Query: 1   MSTSNRGPRHVWTKEEEGTLVECLMELVSMGGWISDNGTFPPGYLAQLVRMMAEKLSGCQ 60
           M++S+R P+H WTKEEE +LV    ELV+ GGW SDNGTF PGYL QL RMMA K+ GC 
Sbjct: 1   MTSSSRLPKHTWTKEEEASLV----ELVNAGGWRSDNGTFHPGYLNQLARMMAFKIPGCN 60

Query: 61  VRATTVIDCRIKTLKRTFQAIVEMRGPACSGFGWNDEEKRIIAEKE 107
           + A+T ID RIK LKR F A+ EMRGP CSGFGWNDE+K I+AEKE
Sbjct: 61  IHAST-IDSRIKLLKRMFHALAEMRGPNCSGFGWNDEKKCIVAEKE 101

The following BLAST results are available for this feature:
BLAST of MELO3C029116.2 vs. NCBI nr
Match NameE-valueIdentityDescription
ADN33754.11.8e-3992.05retrotransposon protein [Cucumis melo subsp. melo][more]
XP_008441954.13.7e-3764.55PREDICTED: uncharacterized protein LOC103485953 [Cucumis melo][more]
ADN34114.11.2e-3566.36retrotransposon protein [Cucumis melo subsp. melo][more]
XP_008466949.11.0e-3163.64PREDICTED: uncharacterized protein LOC103504332, partial [Cucumis melo][more]
XP_008459131.11.3e-3166.04PREDICTED: uncharacterized protein LOC103498331 [Cucumis melo][more]
BLAST of MELO3C029116.2 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of MELO3C029116.2 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of MELO3C029116.2 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|E5GBB2|E5GBB2_CUCME1.2e-3992.05Retrotransposon protein OS=Cucumis melo subsp. melo OX=412675 PE=4 SV=1[more]
tr|A0A1S3B4L3|A0A1S3B4L3_CUCME2.4e-3764.55uncharacterized protein LOC103485953 OS=Cucumis melo OX=3656 GN=LOC103485953 PE=... [more]
tr|E5GCB5|E5GCB5_CUCME7.8e-3666.36Retrotransposon protein OS=Cucumis melo subsp. melo OX=412675 PE=4 SV=1[more]
tr|A0A1S3CTN6|A0A1S3CTN6_CUCME6.8e-3263.64uncharacterized protein LOC103504332 OS=Cucumis melo OX=3656 GN=LOC103504332 PE=... [more]
tr|A0A1S3C8Z4|A0A1S3C8Z4_CUCME8.9e-3266.04uncharacterized protein LOC103498331 OS=Cucumis melo OX=3656 GN=LOC103498331 PE=... [more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR024752Myb/SANT-like_dom
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003677 DNA binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C029116.2.1MELO3C029116.2.1mRNA


InterPro
Analysis Name: InterPro Annotations of melon v3.6.1
Date Performed: 2018-09-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR024752Myb/SANT-like domainPFAMPF12776Myb_DNA-bind_3coord: 12..109
e-value: 9.2E-8
score: 32.9
NoneNo IPR availablePANTHERPTHR31704:SF62SUBFAMILY NOT NAMEDcoord: 9..110
NoneNo IPR availablePANTHERPTHR31704FAMILY NOT NAMEDcoord: 9..110

Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
MELO3C029116.2Cucumber (Gy14) v2cgybmedB460
MELO3C029116.2Cucumber (Gy14) v1cgymedB632
MELO3C029116.2Cucurbita maxima (Rimu)cmamedB377
MELO3C029116.2Cucurbita maxima (Rimu)cmamedB926
MELO3C029116.2Cucurbita moschata (Rifu)cmomedB363
MELO3C029116.2Cucurbita moschata (Rifu)cmomedB915
MELO3C029116.2Cucurbita pepo (Zucchini)cpemedB149
MELO3C029116.2Wild cucumber (PI 183967)cpimedB516
MELO3C029116.2Cucumber (Chinese Long) v2cumedB505
MELO3C029116.2Bottle gourd (USVL1VR-Ls)lsimedB199
MELO3C029116.2Silver-seed gourdcarmedB0014
MELO3C029116.2Silver-seed gourdcarmedB0086
MELO3C029116.2Cucumber (Chinese Long) v3cucmedB531