MELO3C028949.2 (gene) Melon (DHL92) v3.6.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C028949.2
Type	gene
Organism	Cucumis melo (Melon (DHL92) v3.6.1)
Description	Unknown protein
Location	chr01 : 32951686 .. 32952189 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATTCTCCATTCCTTCAATTTCTCTTCACTGATCAGCCACATCCTTCAAATTCAAATGGCTTCTTCCCTCAAAACCCTACTTCCAATAGTGTTTGTCGCTCTTTTGATCTTGTTCTCTAAAACTCTACCTACCTCGTCTGCTGTAGTTCATAACAGAGTTTCTGATTCTCTCACTAAAATTTTTTACCGAAACCTCCTTCAAGTGACGGATCGTCATCAAGCTAATGGTAGAAGGCGAACTCGACGAACCGTTGTGAGAGATCAAGCCCAAGCTCCGAGTCCATCGACTGCAAATCGGAGTCAAACCTTGTCAATTGGGTTTGGCTCTATCCTAGGTCTTTTTATTATTGTTATATACTCTATTTGTTTGAGTGAAACGTTACCTTTATTATTACTTCTTTTTTAATGAAAAATTAGATTGTATTATTATTGTTATTGTTTTGCTTCATCGAAAAAGTAATAGATATGTGTATTTATTTGATGAAAAGAAAATATTGGATTGTAT

mRNA sequence

ATTCTCCATTCCTTCAATTTCTCTTCACTGATCAGCCACATCCTTCAAATTCAAATGGCTTCTTCCCTCAAAACCCTACTTCCAATAGTGTTTGTCGCTCTTTTGATCTTGTTCTCTAAAACTCTACCTACCTCGTCTGCTGTAGTTCATAACAGAGTTTCTGATTCTCTCACTAAAATTTTTTACCGAAACCTCCTTCAAGTGACGGATCGTCATCAAGCTAATGGTAGAAGGCGAACTCGACGAACCGTTGTGAGAGATCAAGCCCAAGCTCCGAGTCCATCGACTGCAAATCGGAGTCAAACCTTGTCAATTGGGTTTGGCTCTATCCTAGGTCTTTTTATTATTGTTATATACTCTATTTGTTTGAGTGAAACGTTACCTTTATTATTACTTCTTTTTTAATGAAAAATTAGATTGTATTATTATTGTTATTGTTTTGCTTCATCGAAAAAGTAATAGATATGTGTATTTATTTGATGAAAAGAAAATATTGGATTGTAT

Coding sequence (CDS)

ATGGCTTCTTCCCTCAAAACCCTACTTCCAATAGTGTTTGTCGCTCTTTTGATCTTGTTCTCTAAAACTCTACCTACCTCGTCTGCTGTAGTTCATAACAGAGTTTCTGATTCTCTCACTAAAATTTTTTACCGAAACCTCCTTCAAGTGACGGATCGTCATCAAGCTAATGGTAGAAGGCGAACTCGACGAACCGTTGTGAGAGATCAAGCCCAAGCTCCGAGTCCATCGACTGCAAATCGGAGTCAAACCTTGTCAATTGGGTTTGGCTCTATCCTAGGTCTTTTTATTATTGTTATATACTCTATTTGTTTGAGTGAAACGTTACCTTTATTATTACTTCTTTTTTAA

Protein sequence

MASSLKTLLPIVFVALLILFSKTLPTSSAVVHNRVSDSLTKIFYRNLLQVTDRHQANGRRRTRRTVVRDQAQAPSPSTANRSQTLSIGFGSILGLFIIVIYSICLSETLPLLLLLF

Homology

[Close]

BLAST of MELO3C028949.2 vs. NCBI nr
Match: KGN44884.1 (hypothetical protein Csa_7G394040 [Cucumis sativus])

HSP 1 Score: 128.6 bits (322), Expect = 1.3e-26
Identity = 75/101 (74.26%), Postives = 85/101 (84.16%), Query Frame = 0


Query: 1   MASSLKTLLPIVFVALLILFSKTLPTSSAVVHNRVSDSLTKI--FYRNLLQVTDRHQANG 60
           MASSLKTL+ IVF+AL IL S+T  TSSAV+H    DSLT+I  F+RNLLQ  DRHQA+G
Sbjct: 1   MASSLKTLVSIVFIALFILLSQTPSTSSAVLHTIAFDSLTEINYFHRNLLQAMDRHQADG 60

Query: 61  RRRTRRTVVRDQAQAPSPSTANRSQTLSIGFGSILGLFIIV 100
           RRRTRRTVVRDQAQAPS  TANRSQTLS+G GS+LGLFI+V
Sbjct: 61  RRRTRRTVVRDQAQAPSXXTANRSQTLSLGAGSVLGLFIVV 101

[Close]

BLAST of MELO3C028949.2 vs. NCBI nr
Match: XP_022954099.1 (uncharacterized protein LOC111456466 [Cucurbita moschata])

HSP 1 Score: 53.9 bits (128), Expect = 4.2e-04
Identity = 46/104 (44.23%), Postives = 60/104 (57.69%), Query Frame = 0


Query: 5   LKTLLPIVFVALLILFSKTLPTSSAVVHNRVSDSLTKIFYRNLLQVTDRHQA--NG---- 64
           +K+L+ I  +ALL+L S+ LP S+A  H      L ++F R+ LQ  +RHQ   NG    
Sbjct: 93  IKSLISIALLALLLL-SEHLPISAA-DHGVAPSPLARVFRRDTLQTAERHQVAENGIGYQ 152

Query: 65  -------RRRTRRTVVRDQAQAPSPSTANRSQTLSIGFGSILGL 96
                  RRR RR V R  A+ PSPS+AN SQT S G GS+L L
Sbjct: 153 YSFEQKIRRRARRAVRR--AEGPSPSSANWSQTSSFGVGSLLCL 192

[Close]

BLAST of MELO3C028949.2 vs. TrEMBL
Match: tr|A0A0A0K7L9|A0A0A0K7L9_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G394040 PE=4 SV=1)

HSP 1 Score: 128.6 bits (322), Expect = 8.8e-27
Identity = 75/101 (74.26%), Postives = 85/101 (84.16%), Query Frame = 0


Query: 1   MASSLKTLLPIVFVALLILFSKTLPTSSAVVHNRVSDSLTKI--FYRNLLQVTDRHQANG 60
           MASSLKTL+ IVF+AL IL S+T  TSSAV+H    DSLT+I  F+RNLLQ  DRHQA+G
Sbjct: 1   MASSLKTLVSIVFIALFILLSQTPSTSSAVLHTIAFDSLTEINYFHRNLLQAMDRHQADG 60

Query: 61  RRRTRRTVVRDQAQAPSPSTANRSQTLSIGFGSILGLFIIV 100
           RRRTRRTVVRDQAQAPS  TANRSQTLS+G GS+LGLFI+V
Sbjct: 61  RRRTRRTVVRDQAQAPSXXTANRSQTLSLGAGSVLGLFIVV 101

The following BLAST results are available for this feature:

BLAST of MELO3C028949.2 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN44884.1	1.3e-26	74.26	hypothetical protein Csa_7G394040 [Cucumis sativus]	[more]
XP_022954099.1	4.2e-04	44.23	uncharacterized protein LOC111456466 [Cucurbita moschata]	[more]

BLAST of MELO3C028949.2 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of MELO3C028949.2 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of MELO3C028949.2 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0K7L9\|A0A0A0K7L9_CUCSA	8.8e-27	74.26	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G394040 PE=4 SV=1	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C028949.2.1	MELO3C028949.2.1	mRNA

InterPro

Analysis Name: InterPro Annotations of melon v3.6.1
Date Performed: 2018-09-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 59..81

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
MELO3C028949.2	Csa7G394040	Cucumber (Chinese Long) v2	cumedB511
MELO3C028949.2	CSPI07G17010	Wild cucumber (PI 183967)	cpimedB525
MELO3C028949.2	Cla014697	Watermelon (97103) v1	medwmB181
MELO3C028949.2	ClCG09G006370	Watermelon (Charleston Gray)	medwcgB155
MELO3C028949.2	Cla97C09G168920	Watermelon (97103) v2	medwmbB194
MELO3C028949.2	CsaV3_7G028760	Cucumber (Chinese Long) v3	cucmedB538

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:

None