MELO3C028931.2 (gene) Melon (DHL92) v3.6.1

Overview
NameMELO3C028931.2
Typegene
OrganismCucumis melo (Melon (DHL92) v3.6.1)
DescriptionTOBAMOVIRUS MULTIPLICATION 1 family protein
Locationchr01 : 32148427 .. 32149221 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
CAATTTTTTGCAATCTTCCGTCTCTCGACCTCTCCAAATTTCCTTACAAGTCTCTCATTCGCACCGTTTTTTAATCATTTCTTCAAGAATGTTATGAACAATGCCCTGAAACCAACTTGTGGACGCCTCTACAGCTACGAAGAAGGAGTACGACGAGGATGGCGATCTCATTGTTTGTTGGGTTTGTGTGTTTTTTTCCTACCTCTTCTTCTTTCCAGTAGCTTGTGATTGTAATTTCTTTTTGCTATTATGTTTTTTATGAAATTTGAAAATTTTGTGTTATTTAGCTCAGTTATCAAGCAAGAGGAAGGTGACCAAAATAAATAAAAAGGCCGAAGTCTAAAATACCCAAAGAAAAATCCCTTTTCTCCTCTGTCTCCTCTCTCTCCTCACCGACGTTGCGGTGGCTCTCTTGCCGGCGTTCGCTTGTTCCTCTCAATTCATCAGATTCTCGGTTCTCTGATTCTACGGCGGAGAGGGAGGGCGATAGTGGGAAAGATTCTTTACTATTTAGGGAAGAACGGGAGATTGCAGTTGAACTTGACGACGACCATGGAGATGGGAGTTACGGCAACCAGCTGGTGGAATGACATCAACGAATCTACTTTTTGGCAGGATCGGATTTTCTACTCTCTTTGTGCTGTATATGCGCTAGTCTCCGCCGTTGCTTTGGTCTATCTCTTTTGCTTCCGTACCCCATCCATCTAAACTTATCTGCTATGTGTGGTTATGGTTATGTATTTGATTGCTAATTGAGTAGATTGGTAGGTTTGGGTGCGTTTCCATTTCCTAGAA

mRNA sequence

CAATTTTTTGCAATCTTCCGTCTCTCGACCTCTCCAAATTTCCTTACAAGTCTCTCATTCGCACCGTTTTTTAATCATTTCTTCAAGAATGTTATGAACAATGCCCTGAAACCAACTTGTGGACGCCTCTACAGCTACGAAGAAGGAGTACGACGAGGATGGCGATCTCATTGTTTGTTGGTTATCAAGCAAGAGGAAGGTGACCAAAATAAATAAAAAGGCCGAAGTCTAAAATACCCAAAGAAAAATCCCTTTTCTCCTCTGTCTCCTCTCTCTCCTCACCGACGTTGCGGTGGCTCTCTTGCCGGCGTTCGCTTGTTCCTCTCAATTCATCAGATTCTCGGTTCTCTGATTCTACGGCGGAGAGGGAGGGCGATAGTGGGAAAGATTCTTTACTATTTAGGGAAGAACGGGAGATTGCAGTTGAACTTGACGACGACCATGGAGATGGGAGTTACGGCAACCAGCTGGTGGAATGACATCAACGAATCTACTTTTTGGCAGGATCGGATTTTCTACTCTCTTTGTGCTGTATATGCGCTAGTCTCCGCCGTTGCTTTGGTCTATCTCTTTTGCTTCCGTACCCCATCCATCTAAACTTATCTGCTATGTGTGGTTATGGTTATGTATTTGATTGCTAATTGAGTAGATTGGTAGGTTTGGGTGCGTTTCCATTTCCTAGAA

Coding sequence (CDS)

ATGGAGATGGGAGTTACGGCAACCAGCTGGTGGAATGACATCAACGAATCTACTTTTTGGCAGGATCGGATTTTCTACTCTCTTTGTGCTGTATATGCGCTAGTCTCCGCCGTTGCTTTGGTCTATCTCTTTTGCTTCCGTACCCCATCCATCTAA

Protein sequence

MEMGVTATSWWNDINESTFWQDRIFYSLCAVYALVSAVALVYLFCFRTPSI
Homology
[Close]
BLAST of MELO3C028931.2 vs. NCBI nr
Match: XP_008441185.1 (PREDICTED: tobamovirus multiplication protein 1 [Cucumis melo])

HSP 1 Score: 88.2 bits (217), Expect = 8.8e-15
Identity = 41/43 (95.35%), Postives = 42/43 (97.67%), Query Frame = 0 

Query: 1  MEMGVTATSWWNDINESTFWQDRIFYSLCAVYALVSAVALVYL 44
          MEMGVTATSWWNDINESTFWQDRIFYSLCAVYALVSAVAL+ L
Sbjct: 12 MEMGVTATSWWNDINESTFWQDRIFYSLCAVYALVSAVALIQL 54

[Close]
BLAST of MELO3C028931.2 vs. NCBI nr
Match: XP_004145105.1 (PREDICTED: tobamovirus multiplication protein 1 [Cucumis sativus] >KGN64534.1 hypothetical protein Csa_1G063580 [Cucumis sativus])

HSP 1 Score: 86.7 bits (213), Expect = 2.6e-14
Identity = 40/43 (93.02%), Postives = 42/43 (97.67%), Query Frame = 0 

Query: 1  MEMGVTATSWWNDINESTFWQDRIFYSLCAVYALVSAVALVYL 44
          MEMGVTA+SWWNDINESTFWQDRIFYSLCAVYALVSAVAL+ L
Sbjct: 12 MEMGVTASSWWNDINESTFWQDRIFYSLCAVYALVSAVALIQL 54

[Close]
BLAST of MELO3C028931.2 vs. NCBI nr
Match: XP_022954819.1 (tobamovirus multiplication protein 1-like [Cucurbita moschata])

HSP 1 Score: 86.7 bits (213), Expect = 2.6e-14
Identity = 40/43 (93.02%), Postives = 42/43 (97.67%), Query Frame = 0 

Query: 1  MEMGVTATSWWNDINESTFWQDRIFYSLCAVYALVSAVALVYL 44
          MEMGVTA+SWWNDINESTFWQDRIFYSLCAVYALVSAVAL+ L
Sbjct: 12 MEMGVTASSWWNDINESTFWQDRIFYSLCAVYALVSAVALIQL 54

[Close]
BLAST of MELO3C028931.2 vs. NCBI nr
Match: XP_023542730.1 (tobamovirus multiplication protein 1-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 86.7 bits (213), Expect = 2.6e-14
Identity = 40/43 (93.02%), Postives = 42/43 (97.67%), Query Frame = 0 

Query: 1  MEMGVTATSWWNDINESTFWQDRIFYSLCAVYALVSAVALVYL 44
          MEMGVTA+SWWNDINESTFWQDRIFYSLCAVYALVSAVAL+ L
Sbjct: 12 MEMGVTASSWWNDINESTFWQDRIFYSLCAVYALVSAVALIQL 54

[Close]
BLAST of MELO3C028931.2 vs. NCBI nr
Match: XP_022933215.1 (tobamovirus multiplication protein 1-like [Cucurbita moschata])

HSP 1 Score: 86.3 bits (212), Expect = 3.3e-14
Identity = 39/43 (90.70%), Postives = 42/43 (97.67%), Query Frame = 0 

Query: 1  MEMGVTATSWWNDINESTFWQDRIFYSLCAVYALVSAVALVYL 44
          MEMGVTA+SWWNDINESTFWQDRIFYSLCA+YALVSAVAL+ L
Sbjct: 12 MEMGVTASSWWNDINESTFWQDRIFYSLCAIYALVSAVALIQL 54

[Close]
BLAST of MELO3C028931.2 vs. TAIR10
Match: AT4G21790.1 (tobamovirus multiplication 1)

HSP 1 Score: 60.5 bits (145), Expect = 3.6e-10
Identity = 27/36 (75.00%), Postives = 31/36 (86.11%), Query Frame = 0 

Query: 8  TSWWNDINESTFWQDRIFYSLCAVYALVSAVALVYL 44
          TSWW+D+NEST WQD IF++LC  YALVSAVALV L
Sbjct: 21 TSWWDDVNESTQWQDGIFFALCGAYALVSAVALVQL 56

[Close]
BLAST of MELO3C028931.2 vs. TAIR10
Match: AT2G02180.1 (tobamovirus multiplication protein 3)

HSP 1 Score: 50.4 bits (119), Expect = 3.7e-07
Identity = 20/37 (54.05%), Postives = 29/37 (78.38%), Query Frame = 0 

Query: 7  ATSWWNDINESTFWQDRIFYSLCAVYALVSAVALVYL 44
          A++WW+D+NES  WQDRIF+ L  +Y +VS VA++ L
Sbjct: 32 ASNWWSDVNESPIWQDRIFHVLAVLYGIVSLVAVIQL 68

[Close]
BLAST of MELO3C028931.2 vs. TAIR10
Match: AT1G14530.1 (Protein of unknown function (DUF1084))

HSP 1 Score: 46.2 bits (108), Expect = 7.0e-06
Identity = 18/35 (51.43%), Postives = 26/35 (74.29%), Query Frame = 0 

Query: 9  SWWNDINESTFWQDRIFYSLCAVYALVSAVALVYL 44
          +WW D+NES  WQDRIF+ L  +Y +VS +A++ L
Sbjct: 24 NWWWDVNESPVWQDRIFHVLAVLYGIVSVIAVIQL 58

[Close]
BLAST of MELO3C028931.2 vs. Swiss-Prot
Match: sp|Q9FEG2|TOM1_ARATH (Tobamovirus multiplication protein 1 OS=Arabidopsis thaliana OX=3702 GN=TOM1 PE=1 SV=1)

HSP 1 Score: 60.5 bits (145), Expect = 6.4e-09
Identity = 27/36 (75.00%), Postives = 31/36 (86.11%), Query Frame = 0 

Query: 8  TSWWNDINESTFWQDRIFYSLCAVYALVSAVALVYL 44
          TSWW+D+NEST WQD IF++LC  YALVSAVALV L
Sbjct: 21 TSWWDDVNESTQWQDGIFFALCGAYALVSAVALVQL 56

[Close]
BLAST of MELO3C028931.2 vs. Swiss-Prot
Match: sp|Q402F4|TOM1_TOBAC (Tobamovirus multiplication protein 1 OS=Nicotiana tabacum OX=4097 GN=TOM1 PE=1 SV=1)

HSP 1 Score: 58.5 bits (140), Expect = 2.4e-08
Identity = 27/36 (75.00%), Postives = 30/36 (83.33%), Query Frame = 0 

Query: 8  TSWWNDINESTFWQDRIFYSLCAVYALVSAVALVYL 44
          T+WW+ INES  WQD IFYSLCA YALVSAVAL+ L
Sbjct: 18 TNWWDQINESVQWQDGIFYSLCASYALVSAVALIQL 53

[Close]
BLAST of MELO3C028931.2 vs. Swiss-Prot
Match: sp|Q9ZUM2|TOM3_ARATH (Tobamovirus multiplication protein 3 OS=Arabidopsis thaliana OX=3702 GN=TOM3 PE=1 SV=2)

HSP 1 Score: 50.4 bits (119), Expect = 6.7e-06
Identity = 20/37 (54.05%), Postives = 29/37 (78.38%), Query Frame = 0 

Query: 7  ATSWWNDINESTFWQDRIFYSLCAVYALVSAVALVYL 44
          A++WW+D+NES  WQDRIF+ L  +Y +VS VA++ L
Sbjct: 32 ASNWWSDVNESPIWQDRIFHVLAVLYGIVSLVAVIQL 68

[Close]
BLAST of MELO3C028931.2 vs. Swiss-Prot
Match: sp|Q402F3|TOM3_TOBAC (Tobamovirus multiplication protein 3 OS=Nicotiana tabacum OX=4097 GN=TOM3 PE=1 SV=1)

HSP 1 Score: 48.5 bits (114), Expect = 2.5e-05
Identity = 21/37 (56.76%), Postives = 27/37 (72.97%), Query Frame = 0 

Query: 7  ATSWWNDINESTFWQDRIFYSLCAVYALVSAVALVYL 44
          A SWW ++N S  WQDR+F+ L  +Y +VSAVALV L
Sbjct: 23 AISWWEEVNRSRAWQDRLFHVLAILYGIVSAVALVQL 59

[Close]
BLAST of MELO3C028931.2 vs. Swiss-Prot
Match: sp|Q948R8|THH1_ARATH (Protein TOM THREE HOMOLOG 1 OS=Arabidopsis thaliana OX=3702 GN=THH1 PE=2 SV=1)

HSP 1 Score: 46.2 bits (108), Expect = 1.3e-04
Identity = 18/35 (51.43%), Postives = 26/35 (74.29%), Query Frame = 0 

Query: 9  SWWNDINESTFWQDRIFYSLCAVYALVSAVALVYL 44
          +WW D+NES  WQDRIF+ L  +Y +VS +A++ L
Sbjct: 24 NWWWDVNESPVWQDRIFHVLAVLYGIVSVIAVIQL 58

[Close]
BLAST of MELO3C028931.2 vs. TrEMBL
Match: tr|A0A1S3B2E1|A0A1S3B2E1_CUCME (tobamovirus multiplication protein 1 OS=Cucumis melo OX=3656 GN=LOC103485394 PE=4 SV=1)

HSP 1 Score: 88.2 bits (217), Expect = 5.8e-15
Identity = 41/43 (95.35%), Postives = 42/43 (97.67%), Query Frame = 0 

Query: 1  MEMGVTATSWWNDINESTFWQDRIFYSLCAVYALVSAVALVYL 44
          MEMGVTATSWWNDINESTFWQDRIFYSLCAVYALVSAVAL+ L
Sbjct: 12 MEMGVTATSWWNDINESTFWQDRIFYSLCAVYALVSAVALIQL 54

[Close]
BLAST of MELO3C028931.2 vs. TrEMBL
Match: tr|A0A0A0LU94|A0A0A0LU94_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G063580 PE=4 SV=1)

HSP 1 Score: 86.7 bits (213), Expect = 1.7e-14
Identity = 40/43 (93.02%), Postives = 42/43 (97.67%), Query Frame = 0 

Query: 1  MEMGVTATSWWNDINESTFWQDRIFYSLCAVYALVSAVALVYL 44
          MEMGVTA+SWWNDINESTFWQDRIFYSLCAVYALVSAVAL+ L
Sbjct: 12 MEMGVTASSWWNDINESTFWQDRIFYSLCAVYALVSAVALIQL 54

[Close]
BLAST of MELO3C028931.2 vs. TrEMBL
Match: tr|A0A1U8ANG2|A0A1U8ANG2_NELNU (tobamovirus multiplication protein 1-like OS=Nelumbo nucifera OX=4432 GN=LOC104604836 PE=4 SV=1)

HSP 1 Score: 64.7 bits (156), Expect = 6.9e-08
Identity = 28/43 (65.12%), Postives = 35/43 (81.40%), Query Frame = 0 

Query: 1  MEMGVTATSWWNDINESTFWQDRIFYSLCAVYALVSAVALVYL 44
          M  GV +++WWN+INEST WQD IF++LCA YALVS VAL+ L
Sbjct: 11 MAFGVASSNWWNEINESTSWQDGIFFALCAAYALVSLVALIQL 53

[Close]
BLAST of MELO3C028931.2 vs. TrEMBL
Match: tr|V4UJ14|V4UJ14_9ROSI (Uncharacterized protein OS=Citrus clementina OX=85681 GN=CICLE_v10016130mg PE=4 SV=1)

HSP 1 Score: 64.3 bits (155), Expect = 9.0e-08
Identity = 29/42 (69.05%), Postives = 34/42 (80.95%), Query Frame = 0 

Query: 2  EMGVTATSWWNDINESTFWQDRIFYSLCAVYALVSAVALVYL 44
          E+G   TSWW +INES+ WQD IFYSLCA YALVS+VAL+ L
Sbjct: 15 ELGTVLTSWWAEINESSQWQDGIFYSLCAAYALVSSVALIQL 56

[Close]
BLAST of MELO3C028931.2 vs. TrEMBL
Match: tr|V4U8M1|V4U8M1_9ROSI (Uncharacterized protein OS=Citrus clementina OX=85681 GN=CICLE_v10016130mg PE=4 SV=1)

HSP 1 Score: 64.3 bits (155), Expect = 9.0e-08
Identity = 29/42 (69.05%), Postives = 34/42 (80.95%), Query Frame = 0 

Query: 2  EMGVTATSWWNDINESTFWQDRIFYSLCAVYALVSAVALVYL 44
          E+G   TSWW +INES+ WQD IFYSLCA YALVS+VAL+ L
Sbjct: 15 ELGTVLTSWWAEINESSQWQDGIFYSLCAAYALVSSVALIQL 56

The following BLAST results are available for this feature:
BLAST of MELO3C028931.2 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_008441185.18.8e-1595.35PREDICTED: tobamovirus multiplication protein 1 [Cucumis melo][more]
XP_004145105.12.6e-1493.02PREDICTED: tobamovirus multiplication protein 1 [Cucumis sativus] >KGN64534.1 hy... [more]
XP_022954819.12.6e-1493.02tobamovirus multiplication protein 1-like [Cucurbita moschata][more]
XP_023542730.12.6e-1493.02tobamovirus multiplication protein 1-like [Cucurbita pepo subsp. pepo][more]
XP_022933215.13.3e-1490.70tobamovirus multiplication protein 1-like [Cucurbita moschata][more]
BLAST of MELO3C028931.2 vs. TAIR10
Match NameE-valueIdentityDescription
AT4G21790.13.6e-1075.00tobamovirus multiplication 1[more]
AT2G02180.13.7e-0754.05tobamovirus multiplication protein 3[more]
AT1G14530.17.0e-0651.43Protein of unknown function (DUF1084)[more]
BLAST of MELO3C028931.2 vs. Swiss-Prot
Match NameE-valueIdentityDescription
sp|Q9FEG2|TOM1_ARATH6.4e-0975.00Tobamovirus multiplication protein 1 OS=Arabidopsis thaliana OX=3702 GN=TOM1 PE=... [more]
sp|Q402F4|TOM1_TOBAC2.4e-0875.00Tobamovirus multiplication protein 1 OS=Nicotiana tabacum OX=4097 GN=TOM1 PE=1 S... [more]
sp|Q9ZUM2|TOM3_ARATH6.7e-0654.05Tobamovirus multiplication protein 3 OS=Arabidopsis thaliana OX=3702 GN=TOM3 PE=... [more]
sp|Q402F3|TOM3_TOBAC2.5e-0556.76Tobamovirus multiplication protein 3 OS=Nicotiana tabacum OX=4097 GN=TOM3 PE=1 S... [more]
sp|Q948R8|THH1_ARATH1.3e-0451.43Protein TOM THREE HOMOLOG 1 OS=Arabidopsis thaliana OX=3702 GN=THH1 PE=2 SV=1[more]
BLAST of MELO3C028931.2 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A1S3B2E1|A0A1S3B2E1_CUCME5.8e-1595.35tobamovirus multiplication protein 1 OS=Cucumis melo OX=3656 GN=LOC103485394 PE=... [more]
tr|A0A0A0LU94|A0A0A0LU94_CUCSA1.7e-1493.02Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G063580 PE=4 SV=1[more]
tr|A0A1U8ANG2|A0A1U8ANG2_NELNU6.9e-0865.12tobamovirus multiplication protein 1-like OS=Nelumbo nucifera OX=4432 GN=LOC1046... [more]
tr|V4UJ14|V4UJ14_9ROSI9.0e-0869.05Uncharacterized protein OS=Citrus clementina OX=85681 GN=CICLE_v10016130mg PE=4 ... [more]
tr|V4U8M1|V4U8M1_9ROSI9.0e-0869.05Uncharacterized protein OS=Citrus clementina OX=85681 GN=CICLE_v10016130mg PE=4 ... [more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR009457DUF1084
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0016021 integral component of membrane
cellular_component GO:0016020 membrane
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C028931.2.1MELO3C028931.2.1mRNA


InterPro
Analysis Name: InterPro Annotations of melon v3.6.1
Date Performed: 2018-09-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR009457Domain of unknown function DUF1084PFAMPF06454DUF1084coord: 7..44
e-value: 1.7E-11
score: 43.9
NoneNo IPR availablePANTHERPTHR31142:SF3PROTEIN TOM THREE HOMOLOG 1-RELATEDcoord: 6..44
NoneNo IPR availablePANTHERPTHR31142FAMILY NOT NAMEDcoord: 6..44

Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
MELO3C028931.2Wax gourdmedwgoB255
MELO3C028931.2Cucumber (Gy14) v2cgybmedB467
MELO3C028931.2Cucumber (Gy14) v1cgymedB368
MELO3C028931.2Cucurbita maxima (Rimu)cmamedB373
MELO3C028931.2Cucurbita maxima (Rimu)cmamedB930
MELO3C028931.2Cucurbita moschata (Rifu)cmomedB359
MELO3C028931.2Cucurbita pepo (Zucchini)cpemedB145
MELO3C028931.2Cucurbita pepo (Zucchini)cpemedB341
MELO3C028931.2Wild cucumber (PI 183967)cpimedB520
MELO3C028931.2Wild cucumber (PI 183967)cpimedB525
MELO3C028931.2Cucumber (Chinese Long) v2cumedB511
MELO3C028931.2Bottle gourd (USVL1VR-Ls)lsimedB201
MELO3C028931.2Watermelon (Charleston Gray)medwcgB155
MELO3C028931.2Watermelon (97103) v1medwmB181
MELO3C028931.2Silver-seed gourdcarmedB0112
MELO3C028931.2Cucumber (Chinese Long) v3cucmedB538
MELO3C028931.2Watermelon (97103) v2medwmbB194