MELO3C028928.2 (gene) Melon (DHL92) v3.6.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C028928.2
Type	gene
Organism	Cucumis melo (Melon (DHL92) v3.6.1)
Description	Reverse transcriptase
Location	chr01 : 31895523 .. 31895782 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

GGTAACAGAAAGTCGTTAAAGGATTGGCAAAAGAGTGCCTGATGGATTGCATAATGTTTGTGAATGGTAGAATGAAGATGGATGAGGGTGCAAATAAGAGAATCAAGATTCCATATCAGGCAACATGGCTTTTTGCAATATCTAGATTAAAGAAATTGGCTTCAACGACAACAACTCAAGTGAAAAAAGCTGAAGATTCTTCTAACAACAGCAGTGAGAGGAATGGAAACATCATAATCAGAACAACCATGAGTATATAA

mRNA sequence

GGTAACAGAAAGTCGTTAAAGGATTGGCAAAAGAGTGCCTGATGGATTGCATAATGTTTGTGAATGGTAGAATGAAGATGGATGAGGGTGCAAATAAGAGAATCAAGATTCCATATCAGGCAACATGGCTTTTTGCAATATCTAGATTAAAGAAATTGGCTTCAACGACAACAACTCAAGTGAAAAAAGCTGAAGATTCTTCTAACAACAGCAGTGAGAGGAATGGAAACATCATAATCAGAACAACCATGAGTATATAA

Coding sequence (CDS)

ATGGATTGCATAATGTTTGTGAATGGTAGAATGAAGATGGATGAGGGTGCAAATAAGAGAATCAAGATTCCATATCAGGCAACATGGCTTTTTGCAATATCTAGATTAAAGAAATTGGCTTCAACGACAACAACTCAAGTGAAAAAAGCTGAAGATTCTTCTAACAACAGCAGTGAGAGGAATGGAAACATCATAATCAGAACAACCATGAGTATATAA

Protein sequence

MDCIMFVNGRMKMDEGANKRIKIPYQATWLFAISRLKKLASTTTTQVKKAEDSSNNSSERNGNIIIRTTMSI

Homology

[Close]

BLAST of MELO3C028928.2 vs. NCBI nr
Match: XP_004143023.2 (PREDICTED: uncharacterized protein LOC101221149 [Cucumis sativus] >KGN62463.1 hypothetical protein Csa_2G354890 [Cucumis sativus])

HSP 1 Score: 69.7 bits (169), Expect = 4.6e-09
Identity = 35/49 (71.43%), Postives = 37/49 (75.51%), Query Frame = 0


Query: 1   MDCIMFVNGRMKMDEGANKRIKIPY----------QATWLFAISRLKKL 40
           MDCIMFVNG MKMDEGANKRIKIPY          +ATWLFA +RLKKL
Sbjct: 523 MDCIMFVNGGMKMDEGANKRIKIPYHAARMISKQMEATWLFATARLKKL 571

[Close]

BLAST of MELO3C028928.2 vs. NCBI nr
Match: XP_008444580.1 (PREDICTED: uncharacterized protein LOC103487852 [Cucumis melo])

HSP 1 Score: 68.9 bits (167), Expect = 7.8e-09
Identity = 34/49 (69.39%), Postives = 37/49 (75.51%), Query Frame = 0


Query: 1   MDCIMFVNGRMKMDEGANKRIKIPY----------QATWLFAISRLKKL 40
           MDCIMFVNG MKMDEGANKRIKIPY          +ATWLFA +RLKK+
Sbjct: 523 MDCIMFVNGGMKMDEGANKRIKIPYHAARMISKQMEATWLFATARLKKM 571

[Close]

BLAST of MELO3C028928.2 vs. NCBI nr
Match: XP_022131466.1 (uncharacterized protein LOC111004666 [Momordica charantia])

HSP 1 Score: 54.3 bits (129), Expect = 2.0e-04
Identity = 31/49 (63.27%), Postives = 33/49 (67.35%), Query Frame = 0


Query: 1   MDCIMFVNGRMKMDEGANKRIKIPYQA----------TWLFAISRLKKL 40
           MDCIMFVNG MKM E  +KRIKIPY A          TWLFA +RLKKL
Sbjct: 502 MDCIMFVNGGMKMAED-HKRIKIPYHAARMISKQMDGTWLFASARLKKL 549

[Close]

BLAST of MELO3C028928.2 vs. NCBI nr
Match: XP_022962238.1 (uncharacterized protein LOC111462748 [Cucurbita moschata])

HSP 1 Score: 53.5 bits (127), Expect = 3.4e-04
Identity = 30/53 (56.60%), Postives = 34/53 (64.15%), Query Frame = 0


Query: 1   MDCIMFVNGRMKMD----EGANKRIKIPY----------QATWLFAISRLKKL 40
           MDCIMFVNG MKM+     G +KRIKIPY          +A WLFA +RLKKL
Sbjct: 523 MDCIMFVNGGMKMEAGNGTGESKRIKIPYHAARMISKQMEAAWLFAPARLKKL 575

[Close]

BLAST of MELO3C028928.2 vs. NCBI nr
Match: XP_023546912.1 (uncharacterized protein LOC111805872 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 53.5 bits (127), Expect = 3.4e-04
Identity = 30/53 (56.60%), Postives = 34/53 (64.15%), Query Frame = 0


Query: 1   MDCIMFVNGRMKMD----EGANKRIKIPY----------QATWLFAISRLKKL 40
           MDCIMFVNG MKM+     G +KRIKIPY          +A WLFA +RLKKL
Sbjct: 523 MDCIMFVNGGMKMEAGNGTGESKRIKIPYHAARMISKQMEAAWLFAPARLKKL 575

[Close]

BLAST of MELO3C028928.2 vs. TrEMBL
Match: tr|A0A0A0LL28|A0A0A0LL28_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G354890 PE=4 SV=1)

HSP 1 Score: 69.7 bits (169), Expect = 3.0e-09
Identity = 35/49 (71.43%), Postives = 37/49 (75.51%), Query Frame = 0


Query: 1   MDCIMFVNGRMKMDEGANKRIKIPY----------QATWLFAISRLKKL 40
           MDCIMFVNG MKMDEGANKRIKIPY          +ATWLFA +RLKKL
Sbjct: 523 MDCIMFVNGGMKMDEGANKRIKIPYHAARMISKQMEATWLFATARLKKL 571

[Close]

BLAST of MELO3C028928.2 vs. TrEMBL
Match: tr|A0A1S3BA59|A0A1S3BA59_CUCME (uncharacterized protein LOC103487852 OS=Cucumis melo OX=3656 GN=LOC103487852 PE=4 SV=1)

HSP 1 Score: 68.9 bits (167), Expect = 5.2e-09
Identity = 34/49 (69.39%), Postives = 37/49 (75.51%), Query Frame = 0


Query: 1   MDCIMFVNGRMKMDEGANKRIKIPY----------QATWLFAISRLKKL 40
           MDCIMFVNG MKMDEGANKRIKIPY          +ATWLFA +RLKK+
Sbjct: 523 MDCIMFVNGGMKMDEGANKRIKIPYHAARMISKQMEATWLFATARLKKM 571

The following BLAST results are available for this feature:

BLAST of MELO3C028928.2 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004143023.2	4.6e-09	71.43	PREDICTED: uncharacterized protein LOC101221149 [Cucumis sativus] >KGN62463.1 hy...	[more]
XP_008444580.1	7.8e-09	69.39	PREDICTED: uncharacterized protein LOC103487852 [Cucumis melo]	[more]
XP_022131466.1	2.0e-04	63.27	uncharacterized protein LOC111004666 [Momordica charantia]	[more]
XP_022962238.1	3.4e-04	56.60	uncharacterized protein LOC111462748 [Cucurbita moschata]	[more]
XP_023546912.1	3.4e-04	56.60	uncharacterized protein LOC111805872 [Cucurbita pepo subsp. pepo]	[more]

BLAST of MELO3C028928.2 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of MELO3C028928.2 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of MELO3C028928.2 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0LL28\|A0A0A0LL28_CUCSA	3.0e-09	71.43	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G354890 PE=4 SV=1	[more]
tr\|A0A1S3BA59\|A0A1S3BA59_CUCME	5.2e-09	69.39	uncharacterized protein LOC103487852 OS=Cucumis melo OX=3656 GN=LOC103487852 PE=...	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006278	RNA-dependent DNA biosynthetic process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003964	RNA-directed DNA polymerase activity

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C028928.2.1	MELO3C028928.2.1	mRNA

InterPro

Analysis Name: InterPro Annotations of melon v3.6.1
Date Performed: 2018-09-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 44..72

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
MELO3C028928.2	Cucumber (Gy14) v2	cgybmedB238
MELO3C028928.2	Cucumber (Gy14) v2	cgybmedB467
MELO3C028928.2	Cucumber (Gy14) v1	cgymedB106
MELO3C028928.2	Cucumber (Gy14) v1	cgymedB368
MELO3C028928.2	Cucurbita maxima (Rimu)	cmamedB251
MELO3C028928.2	Cucurbita maxima (Rimu)	cmamedB373
MELO3C028928.2	Cucurbita maxima (Rimu)	cmamedB459
MELO3C028928.2	Cucurbita maxima (Rimu)	cmamedB930
MELO3C028928.2	Cucurbita moschata (Rifu)	cmomedB234
MELO3C028928.2	Cucurbita moschata (Rifu)	cmomedB359
MELO3C028928.2	Cucurbita moschata (Rifu)	cmomedB446
MELO3C028928.2	Cucurbita moschata (Rifu)	cmomedB919
MELO3C028928.2	Cucurbita pepo (Zucchini)	cpemedB145
MELO3C028928.2	Cucurbita pepo (Zucchini)	cpemedB341
MELO3C028928.2	Cucurbita pepo (Zucchini)	cpemedB350
MELO3C028928.2	Cucurbita pepo (Zucchini)	cpemedB598
MELO3C028928.2	Wild cucumber (PI 183967)	cpimedB269
MELO3C028928.2	Wild cucumber (PI 183967)	cpimedB525
MELO3C028928.2	Cucumber (Chinese Long) v2	cumedB268
MELO3C028928.2	Cucumber (Chinese Long) v2	cumedB511
MELO3C028928.2	Melon (DHL92) v3.6.1	medmedB043
MELO3C028928.2	Melon (DHL92) v3.6.1	medmedB096
MELO3C028928.2	Bottle gourd (USVL1VR-Ls)	lsimedB201
MELO3C028928.2	Bottle gourd (USVL1VR-Ls)	lsimedB266
MELO3C028928.2	Watermelon (Charleston Gray)	medwcgB155
MELO3C028928.2	Watermelon (Charleston Gray)	medwcgB185
MELO3C028928.2	Watermelon (97103) v1	medwmB181
MELO3C028928.2	Watermelon (97103) v1	medwmB213
MELO3C028928.2	Silver-seed gourd	carmedB0112
MELO3C028928.2	Silver-seed gourd	carmedB0459
MELO3C028928.2	Silver-seed gourd	carmedB0767
MELO3C028928.2	Silver-seed gourd	carmedB0821
MELO3C028928.2	Cucumber (Chinese Long) v3	cucmedB272
MELO3C028928.2	Cucumber (Chinese Long) v3	cucmedB461
MELO3C028928.2	Cucumber (Chinese Long) v3	cucmedB538
MELO3C028928.2	Watermelon (97103) v2	medwmbB161
MELO3C028928.2	Watermelon (97103) v2	medwmbB182
MELO3C028928.2	Watermelon (97103) v2	medwmbB194
MELO3C028928.2	Wax gourd	medwgoB199
MELO3C028928.2	Wax gourd	medwgoB202
MELO3C028928.2	Wax gourd	medwgoB255