MELO3C028915.2 (gene) Melon (DHL92) v3.6.1

Overview
NameMELO3C028915.2
Typegene
OrganismCucumis melo (Melon (DHL92) v3.6.1)
DescriptionATP synthase subunit alpha, chloroplastic
Locationchr01 : 30914920 .. 30915065 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
TGAAATTACATCTTCTAACTCTCGGTTAATTGAATCCCCCTCTCCTGGTATTACTTCGAGACGTTTCGTATACGAGTCTCTTCAAACAGGACTTATTGCTATTGATACAATGATTCCTGTCGACGTGGTCAGCAATAATTAATTAT

mRNA sequence

TGAAATTACATCTTCTAACTCTCGGTTAATTGAATCCCCCTCTCCTGGTATTACTTCGAGACGTTTCGTATACGAGTCTCTTCAAACAGGACTTATTGCTATTGATACAATGATTCCTGTCGACGTGGTCAGCAATAATTAATTAT

Coding sequence (CDS)

GAAATTACATCTTCTAACTCTCGGTTAATTGAATCCCCCTCTCCTGGTATTACTTCGAGACGTTTCGTATACGAGTCTCTTCAAACAGGACTTATTGCTATTGATACAATGATTCCTGTCGACGTGGTCAGCAATAATTAA

Protein sequence

EITSSNSRLIESPSPGITSRRFVYESLQTGLIAIDTMIPVDVVSNN
Homology
[Close]
BLAST of MELO3C028915.2 vs. NCBI nr
Match: YP_009270544.1 (ATP synthase CF1 subunit alpha (chloroplast) [Apostasia odorata] >AEJ10061.1 ATP synthase CF1 alpha subunit, partial (plastid) [Apostasia wallichii] >AIY61265.1 ATP synthase CF1 subunit alpha (chloroplast) [Apostasia odorata])

HSP 1 Score: 65.5 bits (158), Expect = 5.5e-08
Identity = 32/40 (80.00%), Postives = 37/40 (92.50%), Query Frame = 0 

Query: 1   EITSSNSRLIESPSPGITSRRFVYESLQTGLIAIDTMIPV 41
           EI++S SRLIESP+PGI SRR VYESLQTGLIAID+MIP+
Sbjct: 121 EISASESRLIESPAPGIISRRSVYESLQTGLIAIDSMIPI 160

[Close]
BLAST of MELO3C028915.2 vs. NCBI nr
Match: YP_008994380.1 (ATP synthase CF1 alpha subunit (chloroplast) [Viviania marifolia] >AGV02809.1 ATP synthase CF1 alpha subunit (chloroplast) [Viviania marifolia])

HSP 1 Score: 65.5 bits (158), Expect = 5.5e-08
Identity = 32/40 (80.00%), Postives = 35/40 (87.50%), Query Frame = 0 

Query: 1   EITSSNSRLIESPSPGITSRRFVYESLQTGLIAIDTMIPV 41
           EITSS SRLIESP+PGI SRR +YE LQTGLIAID MIP+
Sbjct: 121 EITSSESRLIESPAPGIISRRSIYEPLQTGLIAIDAMIPI 160

[Close]
BLAST of MELO3C028915.2 vs. NCBI nr
Match: ADD31505.1 (ATP synthase CF1 alpha subunit protein (chloroplast) [Euonymus americanus])

HSP 1 Score: 65.5 bits (158), Expect = 5.5e-08
Identity = 32/40 (80.00%), Postives = 37/40 (92.50%), Query Frame = 0 

Query: 1   EITSSNSRLIESPSPGITSRRFVYESLQTGLIAIDTMIPV 41
           EI++S SRLIESP+PGI SRR VYESLQTGLIAID+MIP+
Sbjct: 121 EISASESRLIESPAPGIISRRSVYESLQTGLIAIDSMIPI 160

[Close]
BLAST of MELO3C028915.2 vs. NCBI nr
Match: YP_009171669.1 (ATP synthase CF1 alpha subunit (chloroplast) [Euonymus japonicus] >YP_009433503.1 ATP synthase CF1 alpha subunit (chloroplast) [Euonymus schensianus] >AKF33707.1 ATP synthase CF1 alpha subunit (chloroplast) [Euonymus japonicus] >ATD85415.1 ATP synthase CF1 alpha subunit (chloroplast) [Euonymus schensianus])

HSP 1 Score: 65.5 bits (158), Expect = 5.5e-08
Identity = 32/40 (80.00%), Postives = 37/40 (92.50%), Query Frame = 0 

Query: 1   EITSSNSRLIESPSPGITSRRFVYESLQTGLIAIDTMIPV 41
           EI++S SRLIESP+PGI SRR VYESLQTGLIAID+MIP+
Sbjct: 121 EISASESRLIESPAPGIISRRSVYESLQTGLIAIDSMIPI 160

[Close]
BLAST of MELO3C028915.2 vs. NCBI nr
Match: YP_009390711.1 (ATP synthase CF1 alpha subunit (chloroplast) [Mangifera indica] >ARH53526.1 ATP synthase CF1 alpha subunit (chloroplast) [Mangifera indica] >ARV87174.1 ATP synthase CF1 alpha subunit (chloroplast) [Mangifera indica])

HSP 1 Score: 65.5 bits (158), Expect = 5.5e-08
Identity = 32/40 (80.00%), Postives = 37/40 (92.50%), Query Frame = 0 

Query: 1   EITSSNSRLIESPSPGITSRRFVYESLQTGLIAIDTMIPV 41
           EI++S SRLIESP+PGI SRR VYESLQTGLIAID+MIP+
Sbjct: 121 EISASESRLIESPAPGIISRRSVYESLQTGLIAIDSMIPI 160

[Close]
BLAST of MELO3C028915.2 vs. TAIR10
Match: ATCG00120.1 (ATP synthase subunit alpha)

HSP 1 Score: 62.0 bits (149), Expect = 1.1e-10
Identity = 30/40 (75.00%), Postives = 36/40 (90.00%), Query Frame = 0 

Query: 1   EITSSNSRLIESPSPGITSRRFVYESLQTGLIAIDTMIPV 41
           +I++S SRLIESP+PGI SRR VYE LQTGLIAID+MIP+
Sbjct: 121 KISASESRLIESPAPGIISRRSVYEPLQTGLIAIDSMIPI 160

[Close]
BLAST of MELO3C028915.2 vs. Swiss-Prot
Match: sp|P06450|ATPA_SPIOL (ATP synthase subunit alpha, chloroplastic OS=Spinacia oleracea OX=3562 GN=atpA PE=1 SV=1)

HSP 1 Score: 65.1 bits (157), Expect = 2.4e-10
Identity = 33/40 (82.50%), Postives = 35/40 (87.50%), Query Frame = 0 

Query: 1   EITSSNSRLIESPSPGITSRRFVYESLQTGLIAIDTMIPV 41
           EIT+S SRLIESP+PGI SRR VYE LQTGLIAID MIPV
Sbjct: 121 EITASESRLIESPAPGIMSRRSVYEPLQTGLIAIDAMIPV 160

[Close]
BLAST of MELO3C028915.2 vs. Swiss-Prot
Match: sp|Q70XV0|ATPA_AMBTC (ATP synthase subunit alpha, chloroplastic OS=Amborella trichopoda OX=13333 GN=atpA PE=3 SV=1)

HSP 1 Score: 64.7 bits (156), Expect = 3.1e-10
Identity = 32/40 (80.00%), Postives = 36/40 (90.00%), Query Frame = 0 

Query: 1   EITSSNSRLIESPSPGITSRRFVYESLQTGLIAIDTMIPV 41
           EI+SS SRLIESP+PGI SRR VYE LQTGLIAID+MIP+
Sbjct: 121 EISSSESRLIESPAPGIISRRSVYEPLQTGLIAIDSMIPI 160

[Close]
BLAST of MELO3C028915.2 vs. Swiss-Prot
Match: sp|Q9BBS3|ATPA_LOTJA (ATP synthase subunit alpha, chloroplastic OS=Lotus japonicus OX=34305 GN=atpA PE=3 SV=1)

HSP 1 Score: 64.7 bits (156), Expect = 3.1e-10
Identity = 32/40 (80.00%), Postives = 36/40 (90.00%), Query Frame = 0 

Query: 1   EITSSNSRLIESPSPGITSRRFVYESLQTGLIAIDTMIPV 41
           EI+SS SRLIESP+PGI SRR VYE LQTGLIAID+MIP+
Sbjct: 121 EISSSESRLIESPAPGIISRRSVYEPLQTGLIAIDSMIPI 160

[Close]
BLAST of MELO3C028915.2 vs. Swiss-Prot
Match: sp|Q3BAQ7|ATPA_PHAAO (ATP synthase subunit alpha, chloroplastic OS=Phalaenopsis aphrodite subsp. formosana OX=308872 GN=atpA PE=3 SV=1)

HSP 1 Score: 64.7 bits (156), Expect = 3.1e-10
Identity = 32/40 (80.00%), Postives = 36/40 (90.00%), Query Frame = 0 

Query: 1   EITSSNSRLIESPSPGITSRRFVYESLQTGLIAIDTMIPV 41
           EI+SS SRLIESP+PGI SRR VYE LQTGLIAID+MIP+
Sbjct: 121 EISSSESRLIESPAPGIISRRSVYEPLQTGLIAIDSMIPI 160

[Close]
BLAST of MELO3C028915.2 vs. Swiss-Prot
Match: sp|B0Z4N2|ATPA_OENAR (ATP synthase subunit alpha, chloroplastic OS=Oenothera argillicola OX=3940 GN=atpA PE=3 SV=1)

HSP 1 Score: 64.3 bits (155), Expect = 4.0e-10
Identity = 32/40 (80.00%), Postives = 35/40 (87.50%), Query Frame = 0 

Query: 1   EITSSNSRLIESPSPGITSRRFVYESLQTGLIAIDTMIPV 41
           EI+SS SRLIESP+PGI SRR VYE LQTGLIAID MIP+
Sbjct: 121 EISSSESRLIESPAPGIISRRSVYEPLQTGLIAIDAMIPI 160

[Close]
BLAST of MELO3C028915.2 vs. TrEMBL
Match: tr|A0A1Z1GA95|A0A1Z1GA95_MANIN (ATP synthase subunit alpha, chloroplastic OS=Mangifera indica OX=29780 GN=atpA PE=3 SV=1)

HSP 1 Score: 65.5 bits (158), Expect = 3.6e-08
Identity = 32/40 (80.00%), Postives = 37/40 (92.50%), Query Frame = 0 

Query: 1   EITSSNSRLIESPSPGITSRRFVYESLQTGLIAIDTMIPV 41
           EI++S SRLIESP+PGI SRR VYESLQTGLIAID+MIP+
Sbjct: 121 EISASESRLIESPAPGIISRRSVYESLQTGLIAIDSMIPI 160

[Close]
BLAST of MELO3C028915.2 vs. TrEMBL
Match: tr|A0A0U2A0X9|A0A0U2A0X9_9ROSI (ATP synthase subunit alpha, chloroplastic OS=Euonymus japonicus OX=212708 GN=atpA PE=3 SV=1)

HSP 1 Score: 65.5 bits (158), Expect = 3.6e-08
Identity = 32/40 (80.00%), Postives = 37/40 (92.50%), Query Frame = 0 

Query: 1   EITSSNSRLIESPSPGITSRRFVYESLQTGLIAIDTMIPV 41
           EI++S SRLIESP+PGI SRR VYESLQTGLIAID+MIP+
Sbjct: 121 EISASESRLIESPAPGIISRRSVYESLQTGLIAIDSMIPI 160

[Close]
BLAST of MELO3C028915.2 vs. TrEMBL
Match: tr|A0A2R4QI88|A0A2R4QI88_9ROSI (ATP synthase subunit alpha, chloroplastic OS=Euonymus hamiltonianus OX=408194 GN=atpA PE=3 SV=1)

HSP 1 Score: 65.5 bits (158), Expect = 3.6e-08
Identity = 32/40 (80.00%), Postives = 37/40 (92.50%), Query Frame = 0 

Query: 1   EITSSNSRLIESPSPGITSRRFVYESLQTGLIAIDTMIPV 41
           EI++S SRLIESP+PGI SRR VYESLQTGLIAID+MIP+
Sbjct: 121 EISASESRLIESPAPGIISRRSVYESLQTGLIAIDSMIPI 160

[Close]
BLAST of MELO3C028915.2 vs. TrEMBL
Match: tr|D3WDQ2|D3WDQ2_9ROSI (ATP synthase subunit alpha, chloroplastic OS=Euonymus americanus OX=473042 GN=atpA PE=3 SV=1)

HSP 1 Score: 65.5 bits (158), Expect = 3.6e-08
Identity = 32/40 (80.00%), Postives = 37/40 (92.50%), Query Frame = 0 

Query: 1   EITSSNSRLIESPSPGITSRRFVYESLQTGLIAIDTMIPV 41
           EI++S SRLIESP+PGI SRR VYESLQTGLIAID+MIP+
Sbjct: 121 EISASESRLIESPAPGIISRRSVYESLQTGLIAIDSMIPI 160

[Close]
BLAST of MELO3C028915.2 vs. TrEMBL
Match: tr|A0A1C6ZUT0|A0A1C6ZUT0_9ASPA (ATP synthase subunit alpha, chloroplastic OS=Apostasia odorata OX=280455 GN=atpA PE=3 SV=1)

HSP 1 Score: 65.5 bits (158), Expect = 3.6e-08
Identity = 32/40 (80.00%), Postives = 37/40 (92.50%), Query Frame = 0 

Query: 1   EITSSNSRLIESPSPGITSRRFVYESLQTGLIAIDTMIPV 41
           EI++S SRLIESP+PGI SRR VYESLQTGLIAID+MIP+
Sbjct: 121 EISASESRLIESPAPGIISRRSVYESLQTGLIAIDSMIPI 160

The following BLAST results are available for this feature:
BLAST of MELO3C028915.2 vs. NCBI nr
Match NameE-valueIdentityDescription
YP_009270544.15.5e-0880.00ATP synthase CF1 subunit alpha (chloroplast) [Apostasia odorata] >AEJ10061.1 ATP... [more]
YP_008994380.15.5e-0880.00ATP synthase CF1 alpha subunit (chloroplast) [Viviania marifolia] >AGV02809.1 AT... [more]
ADD31505.15.5e-0880.00ATP synthase CF1 alpha subunit protein (chloroplast) [Euonymus americanus][more]
YP_009171669.15.5e-0880.00ATP synthase CF1 alpha subunit (chloroplast) [Euonymus japonicus] >YP_009433503.... [more]
YP_009390711.15.5e-0880.00ATP synthase CF1 alpha subunit (chloroplast) [Mangifera indica] >ARH53526.1 ATP ... [more]
BLAST of MELO3C028915.2 vs. TAIR10
Match NameE-valueIdentityDescription
ATCG00120.11.1e-1075.00ATP synthase subunit alpha[more]
BLAST of MELO3C028915.2 vs. Swiss-Prot
Match NameE-valueIdentityDescription
sp|P06450|ATPA_SPIOL2.4e-1082.50ATP synthase subunit alpha, chloroplastic OS=Spinacia oleracea OX=3562 GN=atpA P... [more]
sp|Q70XV0|ATPA_AMBTC3.1e-1080.00ATP synthase subunit alpha, chloroplastic OS=Amborella trichopoda OX=13333 GN=at... [more]
sp|Q9BBS3|ATPA_LOTJA3.1e-1080.00ATP synthase subunit alpha, chloroplastic OS=Lotus japonicus OX=34305 GN=atpA PE... [more]
sp|Q3BAQ7|ATPA_PHAAO3.1e-1080.00ATP synthase subunit alpha, chloroplastic OS=Phalaenopsis aphrodite subsp. formo... [more]
sp|B0Z4N2|ATPA_OENAR4.0e-1080.00ATP synthase subunit alpha, chloroplastic OS=Oenothera argillicola OX=3940 GN=at... [more]
BLAST of MELO3C028915.2 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A1Z1GA95|A0A1Z1GA95_MANIN3.6e-0880.00ATP synthase subunit alpha, chloroplastic OS=Mangifera indica OX=29780 GN=atpA P... [more]
tr|A0A0U2A0X9|A0A0U2A0X9_9ROSI3.6e-0880.00ATP synthase subunit alpha, chloroplastic OS=Euonymus japonicus OX=212708 GN=atp... [more]
tr|A0A2R4QI88|A0A2R4QI88_9ROSI3.6e-0880.00ATP synthase subunit alpha, chloroplastic OS=Euonymus hamiltonianus OX=408194 GN... [more]
tr|D3WDQ2|D3WDQ2_9ROSI3.6e-0880.00ATP synthase subunit alpha, chloroplastic OS=Euonymus americanus OX=473042 GN=at... [more]
tr|A0A1C6ZUT0|A0A1C6ZUT0_9ASPA3.6e-0880.00ATP synthase subunit alpha, chloroplastic OS=Apostasia odorata OX=280455 GN=atpA... [more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006754 ATP biosynthetic process
biological_process GO:0046034 ATP metabolic process
biological_process GO:0015986 ATP synthesis coupled proton transport
biological_process GO:0006811 ion transport
biological_process GO:0015992 proton transport
biological_process GO:0006810 transport
cellular_component GO:0009579 thylakoid
cellular_component GO:0045261 proton-transporting ATP synthase complex, catalytic core F(1)
cellular_component GO:0016020 membrane
cellular_component GO:0009536 plastid
cellular_component GO:0009535 chloroplast thylakoid membrane
cellular_component GO:0009507 chloroplast
molecular_function GO:0032559 adenyl ribonucleotide binding
molecular_function GO:0005524 ATP binding
molecular_function GO:0016787 hydrolase activity
molecular_function GO:0000166 nucleotide binding
molecular_function GO:0046933 proton-transporting ATP synthase activity, rotational mechanism
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C028915.2.1MELO3C028915.2.1mRNA


InterPro
Analysis Name: InterPro Annotations of melon v3.6.1
Date Performed: 2018-09-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3DG3DSA:3.40.50.300coord: 1..42
e-value: 6.9E-7
score: 30.6
NoneNo IPR availablePANTHERPTHR42875FAMILY NOT NAMEDcoord: 1..40

Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
MELO3C028915.2Cucumber (Gy14) v2cgybmedB456
MELO3C028915.2Cucumber (Gy14) v1cgymedB091
MELO3C028915.2Cucurbita maxima (Rimu)cmamedB378
MELO3C028915.2Cucurbita maxima (Rimu)cmamedB380
MELO3C028915.2Cucurbita maxima (Rimu)cmamedB532
MELO3C028915.2Cucurbita maxima (Rimu)cmamedB923
MELO3C028915.2Cucurbita maxima (Rimu)cmamedB928
MELO3C028915.2Cucurbita moschata (Rifu)cmomedB364
MELO3C028915.2Cucurbita moschata (Rifu)cmomedB366
MELO3C028915.2Cucurbita moschata (Rifu)cmomedB520
MELO3C028915.2Cucurbita moschata (Rifu)cmomedB912
MELO3C028915.2Cucurbita moschata (Rifu)cmomedB917
MELO3C028915.2Cucurbita pepo (Zucchini)cpemedB151
MELO3C028915.2Cucurbita pepo (Zucchini)cpemedB348
MELO3C028915.2Cucurbita pepo (Zucchini)cpemedB351
MELO3C028915.2Wild cucumber (PI 183967)cpimedB176
MELO3C028915.2Wild cucumber (PI 183967)cpimedB513
MELO3C028915.2Cucumber (Chinese Long) v2cumedB177
MELO3C028915.2Cucumber (Chinese Long) v2cumedB502
MELO3C028915.2Melon (DHL92) v3.6.1medmedB092
MELO3C028915.2Bottle gourd (USVL1VR-Ls)lsimedB022
MELO3C028915.2Bottle gourd (USVL1VR-Ls)lsimedB195
MELO3C028915.2Watermelon (Charleston Gray)medwcgB170
MELO3C028915.2Watermelon (Charleston Gray)medwcgB209
MELO3C028915.2Watermelon (97103) v1medwmB195
MELO3C028915.2Watermelon (97103) v1medwmB223
MELO3C028915.2Watermelon (97103) v1medwmB228
MELO3C028915.2Watermelon (97103) v1medwmB248
MELO3C028915.2Silver-seed gourdcarmedB0069
MELO3C028915.2Silver-seed gourdcarmedB0115
MELO3C028915.2Silver-seed gourdcarmedB0756
MELO3C028915.2Silver-seed gourdcarmedB0860
MELO3C028915.2Cucumber (Chinese Long) v3cucmedB179
MELO3C028915.2Cucumber (Chinese Long) v3cucmedB526
MELO3C028915.2Watermelon (97103) v2medwmbB185
MELO3C028915.2Watermelon (97103) v2medwmbB208
MELO3C028915.2Wax gourdmedwgoB255