MELO3C028911.2 (gene) Melon (DHL92) v3.6.1

Overview
NameMELO3C028911.2
Typegene
OrganismCucumis melo (Melon (DHL92) v3.6.1)
DescriptionMyb/SANT-like DNA-binding domain protein
Locationchr01 : 30668914 .. 30669252 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCTACCTCATCACGTGCCCCGAGGCATGTATGGACTAAGGAGGAGGAGGGCACTCTTGTAGAGTTTTCAGTGGATTTGGTTGTCATGGAGGGATGGAAATCCGACAATGGTAGGTTCTGGCCAGGTTAACTGGTACAACTGGTACACATAATGGCCGAGAAATTACCAGGATGTCAGGCTCGCGCAACCACTGTAATCGACTGCATAATAAAGACATTGAAACGAACATTCCAGACCATGATAGAAATGTGGGGGCCAGCATGCAATGGATTCGGTTGGAACAACGAGACAAAATGCATAATTACGAAGAAGGAACTATTCAATAACTGGGTTAGG

mRNA sequence

ATGGCTACCTCATCACGTGCCCCGAGGCATGTATGGACTAAGGAGGAGGAGGGCACTCTTGTAGAGTTTTCAGTGGATTTGGTTGTCATGGAGGGATGGAAATCCGACAATGGTAGGTTCTGGCCAGGTTAACTGGTACAACTGGTACACATAATGGCCGAGAAATTACCAGGATGTCAGGCTCGCGCAACCACTGTAATCGACTGCATAATAAAGACATTGAAACGAACATTCCAGACCATGATAGAAATGTGGGGGCCAGCATGCAATGGATTCGGTTGGAACAACGAGACAAAATGCATAATTACGAAGAAGGAACTATTCAATAACTGGGTTAGG

Coding sequence (CDS)

ATGGCCGAGAAATTACCAGGATGTCAGGCTCGCGCAACCACTGTAATCGACTGCATAATAAAGACATTGAAACGAACATTCCAGACCATGATAGAAATGTGGGGGCCAGCATGCAATGGATTCGGTTGGAACAACGAGACAAAATGCATAATTACGAAGAAGGAACTATTCAATAACTGGGTTAGG

Protein sequence

MAEKLPGCQARATTVIDCIIKTLKRTFQTMIEMWGPACNGFGWNNETKCIITKKELFNNWVR
Homology
[Close]
BLAST of MELO3C028911.2 vs. NCBI nr
Match: ADN33754.1 (retrotransposon protein [Cucumis melo subsp. melo])

HSP 1 Score: 110.5 bits (275), Expect = 2.0e-21
Identity = 48/62 (77.42%), Postives = 54/62 (87.10%), Query Frame = 0 

Query: 1   MAEKLPGCQARATTVIDCIIKTLKRTFQTMIEMWGPACNGFGWNNETKCIITKKELFNNW 60
           MAEKL GCQ RATTVIDC IKTLKRTFQ + EM GPAC+GFGWN+E KCI+ +KELF+NW
Sbjct: 369 MAEKLSGCQVRATTVIDCRIKTLKRTFQAIAEMLGPACSGFGWNDEEKCIVAEKELFDNW 428

Query: 61  VR 63
           VR
Sbjct: 429 VR 430

[Close]
BLAST of MELO3C028911.2 vs. NCBI nr
Match: XP_016899497.1 (PREDICTED: uncharacterized protein LOC107990554 [Cucumis melo])

HSP 1 Score: 99.8 bits (247), Expect = 3.6e-18
Identity = 44/62 (70.97%), Postives = 51/62 (82.26%), Query Frame = 0 

Query: 1  MAEKLPGCQARATTVIDCIIKTLKRTFQTMIEMWGPACNGFGWNNETKCIITKKELFNNW 60
          MAEKLPGCQ  ATTVID  IKTLK+TFQ + EM GPAC+G GWN++ KCII +K LF+NW
Sbjct: 2  MAEKLPGCQVHATTVIDSRIKTLKQTFQAIAEMRGPACSGLGWNDKEKCIIAEKGLFDNW 61

Query: 61 VR 63
          VR
Sbjct: 62 VR 63

[Close]
BLAST of MELO3C028911.2 vs. NCBI nr
Match: XP_008441954.1 (PREDICTED: uncharacterized protein LOC103485953 [Cucumis melo])

HSP 1 Score: 84.0 bits (206), Expect = 2.0e-13
Identity = 31/62 (50.00%), Postives = 49/62 (79.03%), Query Frame = 0 

Query: 1   MAEKLPGCQARATTVIDCIIKTLKRTFQTMIEMWGPACNGFGWNNETKCIITKKELFNNW 60
           MAEKLPG   + ++ IDC +K+LK+T+  + EM GP+C+GFGWN E +CII +++LF++W
Sbjct: 52  MAEKLPGTNIQESSTIDCHVKSLKKTYHAIAEMRGPSCSGFGWNEEFQCIIAERDLFDSW 111

Query: 61  VR 63
           ++
Sbjct: 112 IK 113

[Close]
BLAST of MELO3C028911.2 vs. NCBI nr
Match: XP_008466949.1 (PREDICTED: uncharacterized protein LOC103504332, partial [Cucumis melo])

HSP 1 Score: 76.3 bits (186), Expect = 4.2e-11
Identity = 33/62 (53.23%), Postives = 45/62 (72.58%), Query Frame = 0 

Query: 1   MAEKLPGCQARATTVIDCIIKTLKRTFQTMIEMWGPACNGFGWNNETKCIITKKELFNNW 60
           MA K+PG    A+T ID  IK +KR F  + EM GP C+GFGWN+E KCI+ +KE+F++W
Sbjct: 48  MAFKIPGSNIHAST-IDSRIKLMKRMFHALAEMRGPNCSGFGWNDEKKCIVAEKEVFDDW 107

Query: 61  VR 63
           V+
Sbjct: 108 VK 108

[Close]
BLAST of MELO3C028911.2 vs. NCBI nr
Match: ADN34114.1 (retrotransposon protein [Cucumis melo subsp. melo])

HSP 1 Score: 73.6 bits (179), Expect = 2.7e-10
Identity = 32/60 (53.33%), Postives = 43/60 (71.67%), Query Frame = 0 

Query: 1   MAEKLPGCQARATTVIDCIIKTLKRTFQTMIEMWGPACNGFGWNNETKCIITKKELFNNW 60
           MA K+PG    A+T ID  IK +KR F  + EM GP C+GFGWN+E KCI+ +KE+F++W
Sbjct: 407 MAFKIPGSNIHAST-IDSRIKLMKRMFHALAEMRGPNCSGFGWNDEKKCIVAEKEVFDDW 465

[Close]
BLAST of MELO3C028911.2 vs. TrEMBL
Match: tr|E5GBB2|E5GBB2_CUCME (Retrotransposon protein OS=Cucumis melo subsp. melo OX=412675 PE=4 SV=1)

HSP 1 Score: 110.5 bits (275), Expect = 1.3e-21
Identity = 48/62 (77.42%), Postives = 54/62 (87.10%), Query Frame = 0 

Query: 1   MAEKLPGCQARATTVIDCIIKTLKRTFQTMIEMWGPACNGFGWNNETKCIITKKELFNNW 60
           MAEKL GCQ RATTVIDC IKTLKRTFQ + EM GPAC+GFGWN+E KCI+ +KELF+NW
Sbjct: 369 MAEKLSGCQVRATTVIDCRIKTLKRTFQAIAEMLGPACSGFGWNDEEKCIVAEKELFDNW 428

Query: 61  VR 63
           VR
Sbjct: 429 VR 430

[Close]
BLAST of MELO3C028911.2 vs. TrEMBL
Match: tr|A0A1S4DU21|A0A1S4DU21_CUCME (uncharacterized protein LOC107990554 OS=Cucumis melo OX=3656 GN=LOC107990554 PE=4 SV=1)

HSP 1 Score: 99.8 bits (247), Expect = 2.4e-18
Identity = 44/62 (70.97%), Postives = 51/62 (82.26%), Query Frame = 0 

Query: 1  MAEKLPGCQARATTVIDCIIKTLKRTFQTMIEMWGPACNGFGWNNETKCIITKKELFNNW 60
          MAEKLPGCQ  ATTVID  IKTLK+TFQ + EM GPAC+G GWN++ KCII +K LF+NW
Sbjct: 2  MAEKLPGCQVHATTVIDSRIKTLKQTFQAIAEMRGPACSGLGWNDKEKCIIAEKGLFDNW 61

Query: 61 VR 63
          VR
Sbjct: 62 VR 63

[Close]
BLAST of MELO3C028911.2 vs. TrEMBL
Match: tr|A0A1S3B4L3|A0A1S3B4L3_CUCME (uncharacterized protein LOC103485953 OS=Cucumis melo OX=3656 GN=LOC103485953 PE=4 SV=1)

HSP 1 Score: 84.0 bits (206), Expect = 1.3e-13
Identity = 31/62 (50.00%), Postives = 49/62 (79.03%), Query Frame = 0 

Query: 1   MAEKLPGCQARATTVIDCIIKTLKRTFQTMIEMWGPACNGFGWNNETKCIITKKELFNNW 60
           MAEKLPG   + ++ IDC +K+LK+T+  + EM GP+C+GFGWN E +CII +++LF++W
Sbjct: 52  MAEKLPGTNIQESSTIDCHVKSLKKTYHAIAEMRGPSCSGFGWNEEFQCIIAERDLFDSW 111

Query: 61  VR 63
           ++
Sbjct: 112 IK 113

[Close]
BLAST of MELO3C028911.2 vs. TrEMBL
Match: tr|A0A1S3CTN6|A0A1S3CTN6_CUCME (uncharacterized protein LOC103504332 OS=Cucumis melo OX=3656 GN=LOC103504332 PE=4 SV=1)

HSP 1 Score: 76.3 bits (186), Expect = 2.8e-11
Identity = 33/62 (53.23%), Postives = 45/62 (72.58%), Query Frame = 0 

Query: 1   MAEKLPGCQARATTVIDCIIKTLKRTFQTMIEMWGPACNGFGWNNETKCIITKKELFNNW 60
           MA K+PG    A+T ID  IK +KR F  + EM GP C+GFGWN+E KCI+ +KE+F++W
Sbjct: 48  MAFKIPGSNIHAST-IDSRIKLMKRMFHALAEMRGPNCSGFGWNDEKKCIVAEKEVFDDW 107

Query: 61  VR 63
           V+
Sbjct: 108 VK 108

[Close]
BLAST of MELO3C028911.2 vs. TrEMBL
Match: tr|E5GCB5|E5GCB5_CUCME (Retrotransposon protein OS=Cucumis melo subsp. melo OX=412675 PE=4 SV=1)

HSP 1 Score: 73.6 bits (179), Expect = 1.8e-10
Identity = 32/60 (53.33%), Postives = 43/60 (71.67%), Query Frame = 0 

Query: 1   MAEKLPGCQARATTVIDCIIKTLKRTFQTMIEMWGPACNGFGWNNETKCIITKKELFNNW 60
           MA K+PG    A+T ID  IK +KR F  + EM GP C+GFGWN+E KCI+ +KE+F++W
Sbjct: 407 MAFKIPGSNIHAST-IDSRIKLMKRMFHALAEMRGPNCSGFGWNDEKKCIVAEKEVFDDW 465

The following BLAST results are available for this feature:
BLAST of MELO3C028911.2 vs. NCBI nr
Match NameE-valueIdentityDescription
ADN33754.12.0e-2177.42retrotransposon protein [Cucumis melo subsp. melo][more]
XP_016899497.13.6e-1870.97PREDICTED: uncharacterized protein LOC107990554 [Cucumis melo][more]
XP_008441954.12.0e-1350.00PREDICTED: uncharacterized protein LOC103485953 [Cucumis melo][more]
XP_008466949.14.2e-1153.23PREDICTED: uncharacterized protein LOC103504332, partial [Cucumis melo][more]
ADN34114.12.7e-1053.33retrotransposon protein [Cucumis melo subsp. melo][more]
BLAST of MELO3C028911.2 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of MELO3C028911.2 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of MELO3C028911.2 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|E5GBB2|E5GBB2_CUCME1.3e-2177.42Retrotransposon protein OS=Cucumis melo subsp. melo OX=412675 PE=4 SV=1[more]
tr|A0A1S4DU21|A0A1S4DU21_CUCME2.4e-1870.97uncharacterized protein LOC107990554 OS=Cucumis melo OX=3656 GN=LOC107990554 PE=... [more]
tr|A0A1S3B4L3|A0A1S3B4L3_CUCME1.3e-1350.00uncharacterized protein LOC103485953 OS=Cucumis melo OX=3656 GN=LOC103485953 PE=... [more]
tr|A0A1S3CTN6|A0A1S3CTN6_CUCME2.8e-1153.23uncharacterized protein LOC103504332 OS=Cucumis melo OX=3656 GN=LOC103504332 PE=... [more]
tr|E5GCB5|E5GCB5_CUCME1.8e-1053.33Retrotransposon protein OS=Cucumis melo subsp. melo OX=412675 PE=4 SV=1[more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003677 DNA binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C028911.2.1MELO3C028911.2.1mRNA


Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
MELO3C028911.2Cucumber (Gy14) v2cgybmedB456
MELO3C028911.2Cucumber (Gy14) v1cgymedB091
MELO3C028911.2Cucurbita maxima (Rimu)cmamedB378
MELO3C028911.2Cucurbita maxima (Rimu)cmamedB380
MELO3C028911.2Cucurbita maxima (Rimu)cmamedB532
MELO3C028911.2Cucurbita maxima (Rimu)cmamedB923
MELO3C028911.2Cucurbita maxima (Rimu)cmamedB928
MELO3C028911.2Cucurbita moschata (Rifu)cmomedB364
MELO3C028911.2Cucurbita moschata (Rifu)cmomedB366
MELO3C028911.2Cucurbita moschata (Rifu)cmomedB520
MELO3C028911.2Cucurbita moschata (Rifu)cmomedB912
MELO3C028911.2Cucurbita moschata (Rifu)cmomedB917
MELO3C028911.2Cucurbita pepo (Zucchini)cpemedB151
MELO3C028911.2Cucurbita pepo (Zucchini)cpemedB348
MELO3C028911.2Cucurbita pepo (Zucchini)cpemedB351
MELO3C028911.2Wild cucumber (PI 183967)cpimedB176
MELO3C028911.2Wild cucumber (PI 183967)cpimedB513
MELO3C028911.2Cucumber (Chinese Long) v2cumedB177
MELO3C028911.2Cucumber (Chinese Long) v2cumedB502
MELO3C028911.2Melon (DHL92) v3.6.1medmedB092
MELO3C028911.2Bottle gourd (USVL1VR-Ls)lsimedB022
MELO3C028911.2Bottle gourd (USVL1VR-Ls)lsimedB195
MELO3C028911.2Watermelon (Charleston Gray)medwcgB170
MELO3C028911.2Watermelon (Charleston Gray)medwcgB209
MELO3C028911.2Watermelon (97103) v1medwmB195
MELO3C028911.2Watermelon (97103) v1medwmB223
MELO3C028911.2Watermelon (97103) v1medwmB228
MELO3C028911.2Watermelon (97103) v1medwmB248
MELO3C028911.2Silver-seed gourdcarmedB0057
MELO3C028911.2Silver-seed gourdcarmedB0069
MELO3C028911.2Silver-seed gourdcarmedB0115
MELO3C028911.2Silver-seed gourdcarmedB0756
MELO3C028911.2Cucumber (Chinese Long) v3cucmedB179
MELO3C028911.2Cucumber (Chinese Long) v3cucmedB526
MELO3C028911.2Watermelon (97103) v2medwmbB185
MELO3C028911.2Watermelon (97103) v2medwmbB208
MELO3C028911.2Wax gourdmedwgoB246