MELO3C028837.2 (gene) Melon (DHL92) v3.6.1

Overview
NameMELO3C028837.2
Typegene
OrganismCucumis melo (Melon (DHL92) v3.6.1)
DescriptionProtein FAR1-RELATED SEQUENCE 4
Locationchr01 : 25531823 .. 25532757 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCACTGAATATAGGTTTTTCTTCTTTTGTTTCAAATGATGAAGTTATAAGAGACATCTCTTATTATTATGATTTGAAAGAAAAATGTTTATTTGAAAGTAAAAAAGTGCATTCAAAGTGTTTTTGCATAATAGCAGTGAAGAACAACTTTCAATTTAGGACTATAGAATCAAATTTGAAGTCTCTTGAATTTAGATGTCTGCAAGAAGGCTGCAAATGATATGTAAGGGCATCTCGTTATAAGAAGAGTGATTTGTGGATGCTACGAAAATAAATTTTCTGCTTCTCACATGCAAGCTTCTTCAACAGTAATTGGCAATTGTTTGATAGATGACTTTAGATTCATGTATACTGATCGTTCCATTCCTAAAGAGATTGTGCATAAGGCTCGTACAAATCTTGGAGTTAATATAAGTTACCTAGCTTGGAAGGCAAAAGAACATATGGTAAAGATATTACATGGTGACACAGTTGAATCATATGCATTGATTCCAATATTCTTTGATAAATTGGTTGAATCTAACCCAGGTATGATCAATTTTTTATATCAAATTTAAATTGATTTGCAGATAGATATGGATAGACTAATATCACAGTCTATCTAGATAGACCAATATTGACATCTTTTAGATTCTTTTTTGTTTGCGCTGATAGAAATGTGTTTTTAATTATTATAGGTACATGCAGTACTTTAGAAATGAATGATAATGGTCATTTCAAGTTTGCTTTATGGCTTTTGGTGCATCAATTGAGGGGTGGAAATATTGTAGACCTATTATTTATGTGGATGGGACATTTTTGAAGTGCAAGTTTAGTGGCATCCTATTAACAGCCTCATCATAAGATGTTAACAATTAAATCTTCCCTTTTGCTTTTGTCATTGTAGATTCTGAAAATAATGTATCATAAACATGGTTTTTTAAGAAGATACGA

mRNA sequence

ATGTCACTGAATATAGGTTTTTCTTCTTTTGTTTCAAATGATGAAGTTATAAGAGACATCTCTTATTATTATGATTTGAAAGAAAAATGTTTATTTGAAAGTAAAAAAGTGCATTCAAAGTGTTTTTGCATAATAGCAGTGAAGAACAACTTTCAATTTAGGACTATAGAATCAAATTTGAAGTCTCTTGAATTTAGATGTCTGCAAGAAGGCTGCAAATGATATGTAAGGGCATCTCGTTATAAGAAGAGTGATTTGTGGATGCTACGAAAATAAATTTTCTGCTTCTCACATGCAAGCTTCTTCAACAGTAATTGGCAATTGTTTGATAGATGACTTTAGATTCATGTATACTGATCGTTCCATTCCTAAAGAGATTGTGCATAAGGCTCGTACAAATCTTGGAGTTAATATAAGTTACCTAGCTTGGAAGGCAAAAGAACATATGGTAAAGATATTACATGGTGACACAGTTGAATCATATGCATTGATTCCAATATTCTTTGATAAATTGGTTGAATCTAACCCAGGTACATGCAGTACTTTAGAAATGAATGATAATGGTCATTTCAAGTTTGCTTTATGGCTTTTGGTGCATCAATTGAGGGGTGGAAATATTGTAGACCTATTATTTATGTGGATGGGACATTTTTGAAGTGCAAGTTTAGTGGCATCCTATTAACAGCCTCATCATAAGATGTTAACAATTAAATCTTCCCTTTTGCTTTTGTCATTGTAGATTCTGAAAATAATGTATCATAAACATGGTTTTTTAAGAAGATACGA

Coding sequence (CDS)

ATGCAAGCTTCTTCAACAGTAATTGGCAATTGTTTGATAGATGACTTTAGATTCATGTATACTGATCGTTCCATTCCTAAAGAGATTGTGCATAAGGCTCGTACAAATCTTGGAGTTAATATAAGTTACCTAGCTTGGAAGGCAAAAGAACATATGGTAAAGATATTACATGGTGACACAGTTGAATCATATGCATTGATTCCAATATTCTTTGATAAATTGGTTGAATCTAACCCAGGTACATGCAGTACTTTAGAAATGAATGATAATGGTCATTTCAAGTTTGCTTTATGGCTTTTGGTGCATCAATTGAGGGGTGGAAATATTGTAGACCTATTATTTATGTGGATGGGACATTTTTGA

Protein sequence

MQASSTVIGNCLIDDFRFMYTDRSIPKEIVHKARTNLGVNISYLAWKAKEHMVKILHGDTVESYALIPIFFDKLVESNPGTCSTLEMNDNGHFKFALWLLVHQLRGGNIVDLLFMWMGHF
Homology
[Close]
BLAST of MELO3C028837.2 vs. NCBI nr
Match: XP_022156574.1 (uncharacterized protein LOC111023450 [Momordica charantia])

HSP 1 Score: 97.4 bits (241), Expect = 3.4e-17
Identity = 46/80 (57.50%), Postives = 58/80 (72.50%), Query Frame = 0 

Query: 2  QASSTVIGNCLIDDFRFMYTDRSIPKEIVHKARTNLGVNISYL-AWKAKEHMVKILHGDT 61
          QASS+ IG C+++ FRF  +DRS PK+I+H  RTN GV +SY  AW+AK  + K+L GD 
Sbjct: 10 QASSSFIGECMVEKFRFSSSDRSTPKDIIHHMRTNYGVGVSYYKAWRAKTTVNKLLTGDA 69

Query: 62 VESYALIPIFFDKLVESNPG 81
           +SYALIP FF KL E NPG
Sbjct: 70 DDSYALIPKFFVKLKEMNPG 89

[Close]
BLAST of MELO3C028837.2 vs. NCBI nr
Match: XP_022155934.1 (uncharacterized protein LOC111022933 [Momordica charantia])

HSP 1 Score: 82.0 bits (201), Expect = 1.5e-12
Identity = 42/90 (46.67%), Postives = 55/90 (61.11%), Query Frame = 0 

Query: 12  LIDDFRFMYTDRSIPKEIVHKARTNLGVNISYL-AWKAKEHMVKILHGDTVESYALIPIF 71
           +++ F F  +DRS PK I+H  RTN GV ISY  AW+AK  + K+L GD  +SYALIP  
Sbjct: 1   MVEKFGFSSSDRSTPKVIIHHMRTNYGVAISYYKAWRAKTTVNKLLTGDADDSYALIPKI 60

Query: 72  FDKLVESNPGTCSTLEMNDNGHFKFALWLL 101
           F KL E NP   +  E++   HFK+    L
Sbjct: 61  FVKLKELNPCIYTAYEIDKTRHFKYCFMAL 90

[Close]
BLAST of MELO3C028837.2 vs. NCBI nr
Match: XP_021821669.1 (uncharacterized protein LOC110763220 [Prunus avium])

HSP 1 Score: 77.8 bits (190), Expect = 2.8e-11
Identity = 38/106 (35.85%), Postives = 63/106 (59.43%), Query Frame = 0 

Query: 2   QASSTVIGNCLIDDFRFMYTDRSIPKEIVHKARTNLGVNISYL-AWKAKEHMVKILHGDT 61
           QASS++IG C+   +  +      P +I+   R ++GV+ISY+ AW+A+EH ++++ G  
Sbjct: 93  QASSSLIGQCIKSKYESVSRVHR-PHDIMEDMRKDMGVSISYVKAWRAREHALELVRGSP 152

Query: 62  VESYALIPIFFDKLVESNPGTCSTLEMNDNGHFKFALWLLVHQLRG 107
            ESYA++P +   L   NPGT + +E + N HF +    L   +RG
Sbjct: 153 EESYAMLPSYCAMLEAKNPGTITHIETDSNNHFMYFFMSLGPCIRG 197

[Close]
BLAST of MELO3C028837.2 vs. NCBI nr
Match: XP_008338531.1 (PREDICTED: uncharacterized protein LOC103401593 [Malus domestica])

HSP 1 Score: 75.5 bits (184), Expect = 1.4e-10
Identity = 38/106 (35.85%), Postives = 62/106 (58.49%), Query Frame = 0 

Query: 2   QASSTVIGNCLIDDFRFMYTDRSIPKEIVHKARTNLGVNISYL-AWKAKEHMVKILHGDT 61
           Q SS++IG C+   +  +      P++I+     ++GV+ISY+ AW+AKEH ++ + G  
Sbjct: 226 QXSSSLIGQCIKSKYEGVSRVHR-PRDIIEDMXKDMGVSISYVKAWRAKEHAMEXVRGSX 285

Query: 62  VESYALIPIFFDKLVESNPGTCSTLEMNDNGHFKFALWLLVHQLRG 107
            ESYAL+P +F  L   NPGT + +E ++N  F +    L   +RG
Sbjct: 286 EESYALLPSYFAVLEAKNPGTITHIETDENNCFLYCFMSLGPCIRG 330

[Close]
BLAST of MELO3C028837.2 vs. NCBI nr
Match: XP_022889448.1 (uncharacterized protein LOC111404956 [Olea europaea var. sylvestris])

HSP 1 Score: 75.5 bits (184), Expect = 1.4e-10
Identity = 37/109 (33.94%), Postives = 64/109 (58.72%), Query Frame = 0 

Query: 2   QASSTVIGNCL---IDDFRFMYTDRSIPKEIVHKARTNLGVNISYL-AWKAKEHMVKILH 61
           Q +++V+  C+    + FR  YT   I  +++H    N GV+++Y+ AW+++E  +KIL 
Sbjct: 18  QVTASVVSMCIKYKYNSFRTRYTPHDICNDMLH----NYGVSLNYVKAWRSRERTLKILR 77

Query: 62  GDTVESYALIPIFFDKLVESNPGTCSTLEMNDNGHFKFALWLLVHQLRG 107
           GD  +S+  IP FF  L + NPGT + LE++ +  FK+    +   +RG
Sbjct: 78  GDPTDSFMKIPSFFYMLDQINPGTVTGLELDSHNRFKYCFMAIGTSIRG 122

[Close]
BLAST of MELO3C028837.2 vs. TrEMBL
Match: tr|A0A2U1MG05|A0A2U1MG05_ARTAN (Transposase, MuDR, MULE transposase domain protein OS=Artemisia annua OX=35608 GN=CTI12_AA384380 PE=4 SV=1)

HSP 1 Score: 66.2 bits (160), Expect = 5.6e-08
Identity = 34/96 (35.42%), Postives = 57/96 (59.38%), Query Frame = 0 

Query: 3   ASSTVIGNCLID---DFRFMYTDRSIPKEIVHKARTNLGVNISY-LAWKAKEHMVKILHG 62
           AS+ +IG+ ++D   D R +YT + I K+       +  ++ISY  AW  K + +K+LHG
Sbjct: 160 ASNVIIGHMIVDKLRDNRRVYTGKDIKKDF----NIDWKIDISYHRAWTGKNYALKLLHG 219

Query: 63  DTVESYALIPIFFDKLVESNPGTCSTLEMNDNGHFK 95
              ES+A++P +F  L  +NPGT + ++ +  G FK
Sbjct: 220 SHEESFAVLPKYFYNLKMANPGTVTHIDTDSEGRFK 251

[Close]
BLAST of MELO3C028837.2 vs. TrEMBL
Match: tr|A0A1S4E0D5|A0A1S4E0D5_CUCME (uncharacterized protein LOC107991253 OS=Cucumis melo OX=3656 GN=LOC107991253 PE=4 SV=1)

HSP 1 Score: 65.1 bits (157), Expect = 1.2e-07
Identity = 31/108 (28.70%), Postives = 54/108 (50.00%), Query Frame = 0 

Query: 2   QASSTVIGNCLIDDFRFMYTDRSIPKEIVHKARTNLGVNISY-LAWKAKEHMVKILHGDT 61
           QA+S ++  C    F+        P ++++  + +  VN+SY  AW+ +E  +  + G  
Sbjct: 144 QATSWIVSECTNLIFKMNDKTPCRPSDVINYMKIHHDVNVSYDKAWRGREIALNSIRGTP 203

Query: 62  VESYALIPIFFDKLVESNPGTCSTLEMNDNGHFKFALWLLVHQLRGGN 109
            +SY ++  F D L+ +NPGT +  E +D G FKF    L   +   N
Sbjct: 204 KDSYVMLSTFSDALIRNNPGTYTAKEADDEGRFKFYFMALATSIDAWN 251

[Close]
BLAST of MELO3C028837.2 vs. TrEMBL
Match: tr|A0A2U1KPE6|A0A2U1KPE6_ARTAN (Transposase, MuDR, MULE transposase domain protein OS=Artemisia annua OX=35608 GN=CTI12_AA579760 PE=4 SV=1)

HSP 1 Score: 65.1 bits (157), Expect = 1.2e-07
Identity = 33/96 (34.38%), Postives = 58/96 (60.42%), Query Frame = 0 

Query: 3   ASSTVIGNCLID---DFRFMYTDRSIPKEIVHKARTNLGVNISY-LAWKAKEHMVKILHG 62
           AS+ +IG+ ++D   + R +YT ++I K+       +  ++ISY  AW  K + +K+LHG
Sbjct: 238 ASNVIIGHMIVDKLRENRLVYTGKNIKKDF----NIDWKIDISYHQAWTGKNYALKLLHG 297

Query: 63  DTVESYALIPIFFDKLVESNPGTCSTLEMNDNGHFK 95
              ES+A++P +F  L  +NPGT + ++ +  G FK
Sbjct: 298 SHEESFAVLPKYFYNLRMANPGTVTHIDTDAEGRFK 329

[Close]
BLAST of MELO3C028837.2 vs. TrEMBL
Match: tr|A0A2U1MVA6|A0A2U1MVA6_ARTAN (Transposase, MuDR, MULE transposase domain protein OS=Artemisia annua OX=35608 GN=CTI12_AA338350 PE=4 SV=1)

HSP 1 Score: 65.1 bits (157), Expect = 1.2e-07
Identity = 34/96 (35.42%), Postives = 56/96 (58.33%), Query Frame = 0 

Query: 3   ASSTVIGNCLID---DFRFMYTDRSIPKEIVHKARTNLGVNISY-LAWKAKEHMVKILHG 62
           AS+ +IG+ ++D   D R +YT + I K+       +  ++ISY  AW  K + +K LHG
Sbjct: 238 ASNVIIGHMIVDKLRDNRRVYTGKDIKKDF----NIDWKIDISYHRAWTGKTYALKFLHG 297

Query: 63  DTVESYALIPIFFDKLVESNPGTCSTLEMNDNGHFK 95
              ES+A++P +F  L  +NPGT + ++ +  G FK
Sbjct: 298 SHEESFAVLPKYFYNLKMANPGTVTHIDTDSEGRFK 329

[Close]
BLAST of MELO3C028837.2 vs. TrEMBL
Match: tr|A0A1S3C300|A0A1S3C300_CUCME (uncharacterized protein LOC103495899 OS=Cucumis melo OX=3656 GN=LOC103495899 PE=4 SV=1)

HSP 1 Score: 63.9 bits (154), Expect = 2.8e-07
Identity = 33/108 (30.56%), Postives = 54/108 (50.00%), Query Frame = 0 

Query: 2   QASSTVIGNCLIDDFRFMYTDRSIPKEIVHKARTNLGVNISY-LAWKAKEHMVKILHGDT 61
           QA+S ++  C    F+        P ++++  + +  VNISY  AW  +E  +  + G  
Sbjct: 219 QATSWIVSECTKLIFKTNDKVPCRPSDVINYMKIHHSVNISYDKAWGGREIALNSIRGTP 278

Query: 62  VESYALIPIFFDKLVESNPGTCSTLEMNDNGHFKFALWLLVHQLRGGN 109
            +SYA++  F D L+ +NPGT +  E +D G FKF    L   +   N
Sbjct: 279 EDSYAMLSAFSDALIRNNPGTYTAEEADDEGRFKFYFMALAASIDAWN 326

The following BLAST results are available for this feature:
BLAST of MELO3C028837.2 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022156574.13.4e-1757.50uncharacterized protein LOC111023450 [Momordica charantia][more]
XP_022155934.11.5e-1246.67uncharacterized protein LOC111022933 [Momordica charantia][more]
XP_021821669.12.8e-1135.85uncharacterized protein LOC110763220 [Prunus avium][more]
XP_008338531.11.4e-1035.85PREDICTED: uncharacterized protein LOC103401593 [Malus domestica][more]
XP_022889448.11.4e-1033.94uncharacterized protein LOC111404956 [Olea europaea var. sylvestris][more]
BLAST of MELO3C028837.2 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of MELO3C028837.2 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of MELO3C028837.2 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A2U1MG05|A0A2U1MG05_ARTAN5.6e-0835.42Transposase, MuDR, MULE transposase domain protein OS=Artemisia annua OX=35608 G... [more]
tr|A0A1S4E0D5|A0A1S4E0D5_CUCME1.2e-0728.70uncharacterized protein LOC107991253 OS=Cucumis melo OX=3656 GN=LOC107991253 PE=... [more]
tr|A0A2U1KPE6|A0A2U1KPE6_ARTAN1.2e-0734.38Transposase, MuDR, MULE transposase domain protein OS=Artemisia annua OX=35608 G... [more]
tr|A0A2U1MVA6|A0A2U1MVA6_ARTAN1.2e-0735.42Transposase, MuDR, MULE transposase domain protein OS=Artemisia annua OX=35608 G... [more]
tr|A0A1S3C300|A0A1S3C300_CUCME2.8e-0730.56uncharacterized protein LOC103495899 OS=Cucumis melo OX=3656 GN=LOC103495899 PE=... [more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0008270 zinc ion binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C028837.2.1MELO3C028837.2.1mRNA


InterPro
Analysis Name: InterPro Annotations of melon v3.6.1
Date Performed: 2018-09-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR31973FAMILY NOT NAMEDcoord: 22..93

Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
MELO3C028837.2Cucumber (Gy14) v2cgybmedB456
MELO3C028837.2Cucumber (Gy14) v1cgymedB082
MELO3C028837.2Cucurbita maxima (Rimu)cmamedB374
MELO3C028837.2Cucurbita maxima (Rimu)cmamedB936
MELO3C028837.2Cucurbita moschata (Rifu)cmomedB360
MELO3C028837.2Cucurbita moschata (Rifu)cmomedB925
MELO3C028837.2Cucurbita pepo (Zucchini)cpemedB146
MELO3C028837.2Cucurbita pepo (Zucchini)cpemedB352
MELO3C028837.2Wild cucumber (PI 183967)cpimedB513
MELO3C028837.2Cucumber (Chinese Long) v2cumedB502
MELO3C028837.2Bottle gourd (USVL1VR-Ls)lsimedB197
MELO3C028837.2Silver-seed gourdcarmedB0436
MELO3C028837.2Cucumber (Chinese Long) v3cucmedB527