MELO3C028822.2 (gene) Melon (DHL92) v3.6.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C028822.2
Type	gene
Organism	Cucumis melo (Melon (DHL92) v3.6.1)
Description	cationic amino acid transporter 3, mitochondrial-like
Location	chr01 : 24112425 .. 24113171 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCGTTCCTGTTATCTATTTTCTTGCTGTGGAAATACTTGGATCATAACATCATATAGTCCGTATCGATTTGGACGGCAATTTGGCTTTTTCCAAGATATCCCTAATGATATAGAGGCCATGCCACCTGCGATCACACCAGATAATATGTTACACCACTGGAGGATATGTACGAGGCATAATACTTTAACTGAGTTATACTTGCCTGCCCGTTCGTTAGAGCCTTGCAAGCATGTGACGTAGCGATTTACAGACTGGTGGTCCTTGAGGCACGGAACCTATTTTGAGGATAACATACATTATTTGGTGAGTAGTGTCATTCCTCCCCCTTCACAACCCAAACTACCCAAGAACCGAGGAACCAACCTGGGTGGTAAAGAAATTCGCCTGGTTGAGGCAATGGCTGCTACTCTCGAAGAGGAGATAAATGAGCATAAAGATGAGAGCGATAGCAGCAAAAGTGATCGTCATTGGAAGAGACCTTTGAAGAAAGCAAAGGTATCAAGTGATGATCCCGACCAAAGGGGTTCAAGTGCTTTGGGAGTCCCTAATATTCCACCACTGGTTTGCACATTTTCCTTTCTTAAATTATTTTTTTTTTTTTTTTGTTTTCATCTTCTTCACAAATGACTTATTAATTGTTTACTTCTGCAGTCGCCTTTGAACGCTCATCTTGAAGGCCTCGTAGAACTAGACAACGATGAATCTTTGACAGGACCTCATGTAGTTGATTCGACCATTGAGGGA

mRNA sequence

ATGCGTTCCTGTTATCTATTTTCTTGCTGTGGAAATACTTGGATCATAACATCATATAGTCCGTATCGATTTGGACGGCAATTTGGCTTTTTCCAAGATATCCCTAATGATATAGAGGCCATGCCACCTGCGATCACACCAGATAATATGTTACACCACTGGAGGATATGTACGAGGCATAATACTTTAACTGAGTTATACTTGCCTGCCCGTTCGTTAGAGCCTTGCAAGCATGTGACGTAGCGATTTACAGACTGGTGGTCCTTGAGGCACGGAACCTATTTTGAGGATAACATACATTATTTGGTGAGTAGTGTCATTCCTCCCCCTTCACAACCCAAACTACCCAAGAACCGAGGAACCAACCTGGGTGGTAAAGAAATTCGCCTGGTTGAGGCAATGGCTGCTACTCTCGAAGAGGAGATAAATGAGCATAAAGATGAGAGCGATAGCAGCAAAAGTGATCGTCATTGGAAGAGACCTTTGAAGAAAGCAAAGGTATCAAGTGATGATCCCGACCAAAGGGGTTCAAGTGCTTTGGGAGTCCCTAATATTCCACCACTGTCGCCTTTGAACGCTCATCTTGAAGGCCTCGTAGAACTAGACAACGATGAATCTTTGACAGGACCTCATGTAGTTGATTCGACCATTGAGGGA

Coding sequence (CDS)

ATGGCTGCTACTCTCGAAGAGGAGATAAATGAGCATAAAGATGAGAGCGATAGCAGCAAAAGTGATCGTCATTGGAAGAGACCTTTGAAGAAAGCAAAGGTATCAAGTGATGATCCCGACCAAAGGGGTTCAAGTGCTTTGGGAGTCCCTAATATTCCACCACTGTCGCCTTTGAACGCTCATCTTGAAGGCCTCGTAGAACTAGACAACGATGAATCTTTGACAGGACCTCATGTAGTTGATTCGACCATTGAGGGA

Protein sequence

MAATLEEEINEHKDESDSSKSDRHWKRPLKKAKVSSDDPDQRGSSALGVPNIPPLSPLNAHLEGLVELDNDESLTGPHVVDSTIEG

Homology

[Close]

BLAST of MELO3C028822.2 vs. NCBI nr
Match: ADN34118.1 (hypothetical protein [Cucumis melo subsp. melo])

HSP 1 Score: 87.8 bits (216), Expect = 1.9e-14
Identity = 50/85 (58.82%), Postives = 53/85 (62.35%), Query Frame = 0


Query: 1   MAATLEEEINEHKDESDSSKSDRHWKRPLKKAKVSSDDPDQRGSSALGVPNIPPLSPLNA 60
           MA  LEEE+ EHKDESDSSKSDRHWKRPLKKAKVS D PD                    
Sbjct: 344 MAPNLEEEVKEHKDESDSSKSDRHWKRPLKKAKVSGDHPD-------------------- 403

Query: 61  HLEGLVELDNDESLTGPHVVDSTIE 86
               L+E D+DESLTGPHVVDS  E
Sbjct: 404 WFARLIEPDSDESLTGPHVVDSAFE 408

[Close]

BLAST of MELO3C028822.2 vs. NCBI nr
Match: KGN44065.1 (hypothetical protein Csa_7G160510 [Cucumis sativus])

HSP 1 Score: 84.0 bits (206), Expect = 2.8e-13
Identity = 38/55 (69.09%), Postives = 49/55 (89.09%), Query Frame = 0


Query: 31 KAKVSSDDPDQRGSSALGVPNIPPLSPLNAHLEGLVELDNDESLTGPHVVDSTIE 86
          KAKVS D+  +RGSSA+ +PN+PPLSPL+ HLEGLV++D+DESLTGPH+ D+TIE
Sbjct: 2  KAKVSGDNSCERGSSAMRIPNVPPLSPLDHHLEGLVDVDSDESLTGPHMADTTIE 56

[Close]

BLAST of MELO3C028822.2 vs. NCBI nr
Match: KGN50797.1 (hypothetical protein Csa_5G264300 [Cucumis sativus])

HSP 1 Score: 57.0 bits (136), Expect = 3.7e-05
Identity = 27/39 (69.23%), Postives = 33/39 (84.62%), Query Frame = 0


Query: 1  MAATLEEEINEHKDESDSSKSDRHWKRPLKKAKVSSDDP 40
          MA TLE+++ EHKDESD++KSDRHWKRPLKKAK  +  P
Sbjct: 1  MAPTLEKDVAEHKDESDNNKSDRHWKRPLKKAKTPAAKP 39

[Close]

BLAST of MELO3C028822.2 vs. TrEMBL
Match: tr|E5GCB9|E5GCB9_CUCME (Uncharacterized protein OS=Cucumis melo subsp. melo OX=412675 PE=4 SV=1)

HSP 1 Score: 87.8 bits (216), Expect = 1.3e-14
Identity = 50/85 (58.82%), Postives = 53/85 (62.35%), Query Frame = 0


Query: 1   MAATLEEEINEHKDESDSSKSDRHWKRPLKKAKVSSDDPDQRGSSALGVPNIPPLSPLNA 60
           MA  LEEE+ EHKDESDSSKSDRHWKRPLKKAKVS D PD                    
Sbjct: 344 MAPNLEEEVKEHKDESDSSKSDRHWKRPLKKAKVSGDHPD-------------------- 403

Query: 61  HLEGLVELDNDESLTGPHVVDSTIE 86
               L+E D+DESLTGPHVVDS  E
Sbjct: 404 WFARLIEPDSDESLTGPHVVDSAFE 408

[Close]

BLAST of MELO3C028822.2 vs. TrEMBL
Match: tr|A0A0A0K338|A0A0A0K338_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G160510 PE=4 SV=1)

HSP 1 Score: 84.0 bits (206), Expect = 1.9e-13
Identity = 38/55 (69.09%), Postives = 49/55 (89.09%), Query Frame = 0


Query: 31 KAKVSSDDPDQRGSSALGVPNIPPLSPLNAHLEGLVELDNDESLTGPHVVDSTIE 86
          KAKVS D+  +RGSSA+ +PN+PPLSPL+ HLEGLV++D+DESLTGPH+ D+TIE
Sbjct: 2  KAKVSGDNSCERGSSAMRIPNVPPLSPLDHHLEGLVDVDSDESLTGPHMADTTIE 56

[Close]

BLAST of MELO3C028822.2 vs. TrEMBL
Match: tr|A0A0A0KQU9|A0A0A0KQU9_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G264300 PE=4 SV=1)

HSP 1 Score: 57.0 bits (136), Expect = 2.4e-05
Identity = 27/39 (69.23%), Postives = 33/39 (84.62%), Query Frame = 0


Query: 1  MAATLEEEINEHKDESDSSKSDRHWKRPLKKAKVSSDDP 40
          MA TLE+++ EHKDESD++KSDRHWKRPLKKAK  +  P
Sbjct: 1  MAPTLEKDVAEHKDESDNNKSDRHWKRPLKKAKTPAAKP 39

The following BLAST results are available for this feature:

BLAST of MELO3C028822.2 vs. NCBI nr


Match Name	E-value	Identity	Description
ADN34118.1	1.9e-14	58.82	hypothetical protein [Cucumis melo subsp. melo]	[more]
KGN44065.1	2.8e-13	69.09	hypothetical protein Csa_7G160510 [Cucumis sativus]	[more]
KGN50797.1	3.7e-05	69.23	hypothetical protein Csa_5G264300 [Cucumis sativus]	[more]

BLAST of MELO3C028822.2 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of MELO3C028822.2 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of MELO3C028822.2 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|E5GCB9\|E5GCB9_CUCME	1.3e-14	58.82	Uncharacterized protein OS=Cucumis melo subsp. melo OX=412675 PE=4 SV=1	[more]
tr\|A0A0A0K338\|A0A0A0K338_CUCSA	1.9e-13	69.09	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G160510 PE=4 SV=1	[more]
tr\|A0A0A0KQU9\|A0A0A0KQU9_CUCSA	2.4e-05	69.23	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G264300 PE=4 SV=1	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0003333	amino acid transmembrane transport
cellular_component	GO:0016020	membrane
molecular_function	GO:0015171	amino acid transmembrane transporter activity

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C028822.2.1	MELO3C028822.2.1	mRNA

InterPro

Analysis Name: InterPro Annotations of melon v3.6.1
Date Performed: 2018-09-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 2..22
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..58
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..24

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
MELO3C028822.2	Cucumber (Gy14) v2	cgybmedB460
MELO3C028822.2	Cucumber (Gy14) v1	cgymedB632
MELO3C028822.2	Cucurbita maxima (Rimu)	cmamedB377
MELO3C028822.2	Cucurbita maxima (Rimu)	cmamedB926
MELO3C028822.2	Cucurbita moschata (Rifu)	cmomedB363
MELO3C028822.2	Cucurbita moschata (Rifu)	cmomedB915
MELO3C028822.2	Cucurbita pepo (Zucchini)	cpemedB149
MELO3C028822.2	Wild cucumber (PI 183967)	cpimedB516
MELO3C028822.2	Cucumber (Chinese Long) v2	cumedB505
MELO3C028822.2	Bottle gourd (USVL1VR-Ls)	lsimedB199
MELO3C028822.2	Watermelon (Charleston Gray)	medwcgB177
MELO3C028822.2	Watermelon (97103) v1	medwmB207
MELO3C028822.2	Silver-seed gourd	carmedB0014
MELO3C028822.2	Silver-seed gourd	carmedB0086
MELO3C028822.2	Cucumber (Chinese Long) v3	cucmedB531
MELO3C028822.2	Watermelon (97103) v2	medwmbB217
MELO3C028822.2	Wax gourd	medwgoB262