MELO3C028808.2 (gene) Melon (DHL92) v3.6.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C028808.2
Type	gene
Organism	Cucumis melo (Melon (DHL92) v3.6.1)
Description	protein Ycf2-like
Location	chr01 : 7604035 .. 7609336 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCCGTCTACAAGTGAGATTAATGTCCTGAGGAAAATGGTAGAGAAGATTGAGATTAGCCAACAGAGGATGGAGACAAGTGTGGAAGGTCTTCTTGAGTTTCTTAAATATGTGGAGTTGAAAATGAATAATCGGTTTGAAGAACTAGTGCAGAAGATGAATGGAATAATGGAAGCAACAAAGAGGCATGGATTTATGGTAAGCATGATGTGTAGACTTTGATAATATGTGTATCTGGTTTGTATTTGTAAAGAATCCTAACAAATACAGTGTATCTGGTTGCAAATAGTCTTACCAAATACAGTGTATTTGGTTGTATTTGTTGCGCAGGGAGCACAGGCGTTTGAAGAGCACCTTAACAAGATGGAGGAGGACCAAGAAGAAGATGATGTTGAAGATTTGAACTTGGATACAAGCAATCGAACCGTGCTTGGAAAAAGGGATGACGATGAAGACAAGGAAAATGGCTTATGGATGAAAGTCAAGGAGAGAGTTCAAGAGGGCACGATGGTGGTCAATCTAAAGTGGAAAAATCAGAGACACCACCAAGATCTGGAGATAAAGAGTCTTCGCAGTATAAGGTAAAGAAAAAAAATCAAAATGTTGAGAATGTGTATAATACATATTATAGACTAATATGTACATACTTGTAATAGGCCCCAGAGGAAACAGATGAGGAGATAAACAGGCTGATACGATCAATTGATGAGAGTGTTATATATGATGAGATCAAGAAAAAAGAACAGAGGAGAAGAACGGTATAGTTGTGGATCTCTATATGTTTATTATACTAAATGACTGTGTATGTTTAATGACTGTAGTATAAACTACATTGAATTTGTAGCTTTAACTGTGGTAATAGGCTGCTTGTTAGTTTAAGTGTATGGGGATCGATGACATGAATGTTTTTTGGGGTTATCTACAAGTTGCCACTGTTTTTTTGTAATGAGTGCTGGTAATTACTATGTATGCGTTGGTTACGGTCCCCTTCTGGGTAATTATCATTAGGGATATCATTGAATATCATTTATCATTATGAATATGATTTAATGGCTTGCTGTAAAACATTTAACATTATGAAGATCAGTTAATGGATGGATAGGTATAATGTTGAATGAGTATATAGTTATTCTATCTAGGCAATTGGGATAACATTTCAACTGTATTTGAAATCTGGCATATAAGTATGTGAATGGCTGTAGGTTTGGTGTGACTACATATTCCTTCGAGACTTTGTGAATTGTTGTATATGAATGGTATCTTTAACTAATACCTGAGAAATATTAAAGAATGCACAGGGTCAGTGTTCATTGAATTCAACCCCAAGAATATTGAGGAACGTGCAACCAGCATTTGGCAAAATTAAACATAGACCACAGATGGCCAATGTGATAACATATCTAGTATAAATGACGGTTCAACATTTCGAAAATGATAATAACATACTTAATATAGAGACTTGTTTGCCAATAACTTGTAGATTATAGGCAAAATGTCGAGTAATGATAGGGTTTCAAACATGGCGGAAAATACAGCAGCAACAAGGGTTGTTCTAAAACATGTAAGCATACGATCTAGTTTATACGTAATTTATAACTTGTTATCCTATTCATGGATTTTTTTCTTAGCTAAACAACACAAAGGAAGGGTTAGGAATGAAAAGATCAAATGCTAAAGAGTATAGAGAGGTTACACCAGTTTCAACGGGAATATGGATAGATGCTTTAAGAGGAAAAGTAGTTGAACCAAGGAAGGATAAAGAGAATTCATCCTCAGAATAGCCATCGTTTGATCTGCATCTAAGTCAAGCTTGAAATAATCATTTTATGCTTTTTTGTTAGGGGTCTAGAATATATTGGAATTACCATATTTTCGTTGAACTAAGGTATTTGTTTATACAAAACTTATAAATTCATGCTTATTTGATAATTGTTATGTAAGCTGGATTACATTGGATTTTGAACATAACTGTGATTGAGTTTAAAACAGCCAAATACTGTGTAGTTAAATACTTTGTATTTAAATGAACAAAAGAACGATCTTATTTGAACGAATCATTCAACCAACTTGATAAGAAAATACAACTATGAATATAAACTAATTATCCCTTTTACTTCTTAAACATCGCAATTACTAAATGGGTTCTTTACAGGACCTGCAATTGTGACCTTTTTTACCACACCCGCTACAACGAACAGAGGCTTTCTTCTCTAAAAATGAAGTAAACCTCTTCTTTTTAGGTCTTCCAGCTGCACGTTTAACCTGCGGTGGAAGTATTCCATCATTGCCACCTTGGTGGGTATTCCTAATTTGGTTTACAGTACCAATAGGACGCATCCCCTTCTTGTACAAGTTTATTAAATTTGAGACATAGTACAACTTATCAGTGTATAAATGAAGATTAAGATTCCTTGTGGACAATGCTATACATGCATGTGAACAAGGGATCAAATCAAGGTCCCATTGACGACATGAACATGTTCGATTTAAAATATTGACGACAAATTGTTCCTTACGATGGTGGACTTCAAATTCATGTTGGTCTACAGGATATATCTGTCAAACCAATACAACAAATATCATGTACAAAAAAAGTAATTCACTACACATTTATTGCATTTATTGAATATTAAATAACTTACATTCATTAAGCAGCTCTGCTCCAAGGATTCTCGAATCATATCTTCTGCATATATTGAAAGTCGTGTGCGTTGGAAACTTCATTTGGTACGACGTTCATAGAACCATATTTGAATCAAACTACGGATAGATTCTAGAGTCCAATTACAGGCAATTCTCGTTGTTCTTTCAAGGTAGAGTTCATACTTTCAGAGATGTTGGTTGTAATAACTTGGTATCTTTTTCTCCTAAAAAATGCCCTGACCCACTTATGTCTTCCCACTGCTTCCAACTCATGCCTCATTGATGGAGATAGTTGTTCGAGTTGCCTCATGTAGTACTCAAATTCCAGTGGTGTATACGCTCTGGCACATATTGAATGAGTCCTCCATAGGAAGTGATTTATGGTTCTTTTTCAAGTTCTTCAACAAATGGAATGCACATAATCCATGTTCAGCTATTTCATAAACGGCATTAAACCCATTTTCTATACTTTTGTGAGCATCAGAAACAATTACCATCTCATTATGTTCCTCAAAAACGGCTTTAAGATTTCGAAAAAACCATGACCATGACAAATCATTCTCTGAATCAACGACAGCAAAAGCTAGTGGCACAATTTGAGAGTTCCCATCAACAGTACAAGCAGATATGAGGGTACCAAGATATTTGTTCTTCATAGCTGCACCATCAACAGAAATAACTGGTACGCAGTAGTTCCATGCATCAATTGAAGCAGCTAGTGCCATGAAATAGAATTTAAACCGACCTTCATCATCTGCTTCTTCAGCCGTATATGTACCTAAAAATAGTCAGATAAAGTAGTTTAGAATTACATTGTATTTTTATATGGATCTTGTGGTATCTGTTAAAATACTAGATAATTGAAATTTTTGATACCTGGGTTGTTTCGGATCAGTGCATCTGAAAAGGCAGACAACATGGCATATGAGTCCTCCGGAGTACCCCTAATGGAATTCAAAGCAATTTCACGTCCTCTCCAAGCTTTATCATAACTTATGTTCACACTGTGGTGAATCTTCATATAATTTATAACATCCGAAGGACGACATGGAGCCTTGTCATTCATTTTAAATATTAATTTCGTACACTCAGATACAATCCAGGATGTTGCTTGTTTGTGGTCATTCTTCACGACCTCAACAGAACACATATGTGTATCTGTGAATTTACGAACTATCCAAATGTCACTTTTTTGAATACCGAAGCACGTAGATACCAGGGGCAAGATGGATCCTTACATTTGATGTCGAATGATGTACGGTTGGACCTAACAGTAACTAATTCAAAGCTACTATTCAAAGCGAGCATATAAATAGCTTTTTTCAAAACTGATTTTTGACTAAACATGGATCCAACTCTAATGTGTATAACAGTATTTGGTGATTCAAATGCATTGAGATCAATAATTACATTTTCAGTACGTGAGTCTTCGGTTCTAGGTAGTTCGATGCTCATATAAGGGGTATTTCCAATATCCGTAGCAGGTGCGGTTTCAACAACAATGAGTAGATCATTGTCCGGGAATTTTGATAAAACTAACATAATCCAAGACACATCCTTATCATCTACAATCCGAATGAGTTTCAAATTGTTGGATACAAAGGGTCAACCTACAGATAGAAACTTCTGAATTTGGAAAAAGTCTATGTTGGATACAATTTACAAATTCTTGAAACGAGGATGAAACTGGAACATATACATCAAGGAGGCGATAGTCAATATATCAGCATGACTCGATCCATCTACCATGGAATACGGTCTTCACTCGTTGCAAAGCCATCGAAACAATTCAAAGGGAACAGGTTTATTGAATAAAGTATTAAGTGGTAGATTGTATATAAGAGGGATGAATATTAAATTATTGTTTCATCTTATGAATATAATGTATATAGCATAATCTTATGAATATAATGTTGGGAAGACAATGTTAGTTATTTTTCTAAAGTAGTTTAGAATATAAAGATTTGAAATTTCAAAAAGAATATGTTTTGCTCCGTTCTTCGTTAAAATTTATGTTTTAATGGCCATGAACGTTTTGGTGAAATTTGTATTTTCGTAATATATTCAGATTTGAGATTGTGTTTCGGTTTCCATTAACGAACTTTGGTTTGTTTGTAACATTAAAGATATAAATGACAATTTATTTGGCATGATTTTAGGGATAGTTGAGATTTGAATCTAAAGATAAGTATTCCCATTATATTTGCCATAATTTTAGGGAATTGTTGGAGTTTAAATTTGAATTTTATAGATCTGAATTTCGATTGTTTTAAATGCTTTTCGGTTACATTCTTTAATGTTTTTTCGTAAATGGTTAATTATTTCATCATGTTTATCATTATTTTAGAAAGGAATACTTCATTGCATTAAAATTCTATAAGCTATTCATTGCGTTAATAGCTATTGAAGGAAAAATCGGTAGCTAAAGTTTGAATATATAATTATTGAAGGGAAAAATGGGAATAATTAGAGGATATTGAAATCAATTAAACATGGTTAGGGATCTTTGTGATAATATAATAATTATTTGATTTGGTTAATAATTAACATAAGTGGGTGTGTTTATAGATACACTTTAATTGGCTATGTTATGTTTTATTTGATTTTCCAGGTTCCTTAAATATATTGTATTTGATTCAGGACAGTTCTGATACGTTAA

mRNA sequence

ATGCCGTCTACAAGTGAGATTAATGTCCTGAGGAAAATGGTAGAGAAGATTGAGATTAGCCAACAGAGGATGGAGACAAGTGTGGAAGGTCTTCTTGAGTTTCTTAAATATGTGGAGTTGAAAATGAATAATCGGTTTGAAGAACTAGTGCAGAAGATGAATGGAATAATGGAAGCAACAAAGAGGCATGGATTTATGGGAGCACAGGCGTTTGAAGAGCACCTTAACAAGATGGAGGAGGACCAAGAAGAAGATGATGTTGAAGATTTGAACTTGGATACAAGCAATCGAACCGTGCTTGGAAAAAGGGATGACGATGAAGACAAGGAAAATGGCTTATGGATGAAAGTCAAGGAGAGAGTTCAAGAGGGCACGATGGTGGCCCCAGAGGAAACAGATGAGGAGATAAACAGGCTGATACGATCAATTGATGAGAGTGTTATATATGATGAGATCAAGAAAAAAGAACAGAGGAGAAGAACGATTATAGGCAAAATGTCGAGTAATGATAGGGTTTCAAACATGGCGGAAAATACAGCAGCAACAAGGGTTGTTCTAAAACATCTAAACAACACAAAGGAAGGGTTAGGAATGAAAAGATCAAATGCTAAAGAGTATAGAGAGGTTACACCAGTTTCAACGGGAATATGGATAGATGCTTTAAGAGGAAAAGGGTCTAGAATATATTGGAATTACCATATTTTCGTTGAACTAAGGACAGTTCTGATACGTTAA

Coding sequence (CDS)

ATGCCGTCTACAAGTGAGATTAATGTCCTGAGGAAAATGGTAGAGAAGATTGAGATTAGCCAACAGAGGATGGAGACAAGTGTGGAAGGTCTTCTTGAGTTTCTTAAATATGTGGAGTTGAAAATGAATAATCGGTTTGAAGAACTAGTGCAGAAGATGAATGGAATAATGGAAGCAACAAAGAGGCATGGATTTATGGGAGCACAGGCGTTTGAAGAGCACCTTAACAAGATGGAGGAGGACCAAGAAGAAGATGATGTTGAAGATTTGAACTTGGATACAAGCAATCGAACCGTGCTTGGAAAAAGGGATGACGATGAAGACAAGGAAAATGGCTTATGGATGAAAGTCAAGGAGAGAGTTCAAGAGGGCACGATGGTGGCCCCAGAGGAAACAGATGAGGAGATAAACAGGCTGATACGATCAATTGATGAGAGTGTTATATATGATGAGATCAAGAAAAAAGAACAGAGGAGAAGAACGATTATAGGCAAAATGTCGAGTAATGATAGGGTTTCAAACATGGCGGAAAATACAGCAGCAACAAGGGTTGTTCTAAAACATCTAAACAACACAAAGGAAGGGTTAGGAATGAAAAGATCAAATGCTAAAGAGTATAGAGAGGTTACACCAGTTTCAACGGGAATATGGATAGATGCTTTAAGAGGAAAAGGGTCTAGAATATATTGGAATTACCATATTTTCGTTGAACTAAGGACAGTTCTGATACGTTAA

Protein sequence

MPSTSEINVLRKMVEKIEISQQRMETSVEGLLEFLKYVELKMNNRFEELVQKMNGIMEATKRHGFMGAQAFEEHLNKMEEDQEEDDVEDLNLDTSNRTVLGKRDDDEDKENGLWMKVKERVQEGTMVAPEETDEEINRLIRSIDESVIYDEIKKKEQRRRTIIGKMSSNDRVSNMAENTAATRVVLKHLNNTKEGLGMKRSNAKEYREVTPVSTGIWIDALRGKGSRIYWNYHIFVELRTVLIR

Homology

[Close]

BLAST of MELO3C028808.2 vs. NCBI nr
Match: XP_008450225.1 (PREDICTED: protein Ycf2-like [Cucumis melo])

HSP 1 Score: 113.2 bits (282), Expect = 1.2e-21
Identity = 72/131 (54.96%), Postives = 90/131 (68.70%), Query Frame = 0


Query: 1   MPSTSEINVLRKMVEKIEISQQRMETSV---EGLLEFLKYVELKMNNRFEELVQKMNGIM 60
           MPSTSEINVLRKMVEKIE SQQRMET+V   EG++E ++  +   +              
Sbjct: 304 MPSTSEINVLRKMVEKIENSQQRMETNVEEDEGIMEAIRSQQCSSS-------------- 363

Query: 61  EATKRHGFMGAQAFEEHLNKMEEDQEEDDVEDLNLDTSNRTVLGKRDDDEDK-ENGLWMK 120
           +      FMGA+AFEEHL+K++EDQEEDDVEDL LD+SNRTV  K    + K E GLWMK
Sbjct: 364 DGQYTQEFMGARAFEEHLDKVKEDQEEDDVEDLKLDSSNRTVFEKGMTMKTKTEKGLWMK 420

Query: 121 VKERVQEGTMV 128
           V+++V+EG MV
Sbjct: 424 VEQKVREGKMV 420

[Close]

BLAST of MELO3C028808.2 vs. NCBI nr
Match: XP_011648518.1 (PREDICTED: uncharacterized protein LOC105434509 [Cucumis sativus])

HSP 1 Score: 72.0 bits (175), Expect = 3.1e-09
Identity = 40/91 (43.96%), Postives = 62/91 (68.13%), Query Frame = 0


Query: 1  MPSTSEINVLRKMVEKIEISQQRMETSVEGLLEFLKYVELKMNNRFEELVQKMNGIMEAT 60
          MPSTS+ + L K+VEKI+ +Q+RME S++ ++ F K+VE KM+ + EE   K+N I+E  
Sbjct: 1  MPSTSQFDGLAKIVEKIKQNQERMEKSMQDMIGFFKFVEEKMDKKLEERHDKVNNILEDI 60

Query: 61 KR-----------HGFMGAQAFEEHLNKMEE 81
          KR           + +MGA++FE+HL+K+EE
Sbjct: 61 KRKQPSSSGAQETNEYMGARSFEKHLDKVEE 91

[Close]

BLAST of MELO3C028808.2 vs. TrEMBL
Match: tr|A0A1S3BNT0|A0A1S3BNT0_CUCME (protein Ycf2-like OS=Cucumis melo OX=3656 GN=LOC103491885 PE=4 SV=1)

HSP 1 Score: 113.2 bits (282), Expect = 8.1e-22
Identity = 72/131 (54.96%), Postives = 90/131 (68.70%), Query Frame = 0


Query: 1   MPSTSEINVLRKMVEKIEISQQRMETSV---EGLLEFLKYVELKMNNRFEELVQKMNGIM 60
           MPSTSEINVLRKMVEKIE SQQRMET+V   EG++E ++  +   +              
Sbjct: 304 MPSTSEINVLRKMVEKIENSQQRMETNVEEDEGIMEAIRSQQCSSS-------------- 363

Query: 61  EATKRHGFMGAQAFEEHLNKMEEDQEEDDVEDLNLDTSNRTVLGKRDDDEDK-ENGLWMK 120
           +      FMGA+AFEEHL+K++EDQEEDDVEDL LD+SNRTV  K    + K E GLWMK
Sbjct: 364 DGQYTQEFMGARAFEEHLDKVKEDQEEDDVEDLKLDSSNRTVFEKGMTMKTKTEKGLWMK 420

Query: 121 VKERVQEGTMV 128
           V+++V+EG MV
Sbjct: 424 VEQKVREGKMV 420

The following BLAST results are available for this feature:

BLAST of MELO3C028808.2 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008450225.1	1.2e-21	54.96	PREDICTED: protein Ycf2-like [Cucumis melo]	[more]
XP_011648518.1	3.1e-09	43.96	PREDICTED: uncharacterized protein LOC105434509 [Cucumis sativus]	[more]

BLAST of MELO3C028808.2 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of MELO3C028808.2 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of MELO3C028808.2 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3BNT0\|A0A1S3BNT0_CUCME	8.1e-22	54.96	protein Ycf2-like OS=Cucumis melo OX=3656 GN=LOC103491885 PE=4 SV=1	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C028808.2.1	MELO3C028808.2.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
MELO3C028808.2	Cucumber (Gy14) v2	cgybmedB475
MELO3C028808.2	Cucumber (Gy14) v1	cgymedB083
MELO3C028808.2	Cucumber (Gy14) v1	cgymedB407
MELO3C028808.2	Cucurbita maxima (Rimu)	cmamedB020
MELO3C028808.2	Cucurbita maxima (Rimu)	cmamedB456
MELO3C028808.2	Cucurbita moschata (Rifu)	cmomedB008
MELO3C028808.2	Cucurbita moschata (Rifu)	cmomedB444
MELO3C028808.2	Cucurbita moschata (Rifu)	cmomedB453
MELO3C028808.2	Cucurbita pepo (Zucchini)	cpemedB594
MELO3C028808.2	Cucurbita pepo (Zucchini)	cpemedB845
MELO3C028808.2	Wild cucumber (PI 183967)	cpimedB534
MELO3C028808.2	Cucumber (Chinese Long) v2	cumedB521
MELO3C028808.2	Bottle gourd (USVL1VR-Ls)	lsimedB207
MELO3C028808.2	Watermelon (Charleston Gray)	medwcgB164
MELO3C028808.2	Watermelon (97103) v1	medwmB189
MELO3C028808.2	Cucumber (Chinese Long) v3	cucmedB547
MELO3C028808.2	Watermelon (97103) v2	medwmbB204
MELO3C028808.2	Wax gourd	medwgoB247