MELO3C028794.2 (gene) Melon (DHL92) v3.6.1

Overview
NameMELO3C028794.2
Typegene
OrganismCucumis melo (Melon (DHL92) v3.6.1)
DescriptionLOW QUALITY PROTEIN: gamma-aminobutyrate transaminase POP2, mitochondrial-like
Locationchr01 : 7358555 .. 7361292 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGATAAGGGTTAGATGAAACTTAGAAATAAGTTCTCCCTTGAATATAGGCAGGGAGTGAGCAAATTTTTAGAATTTGTCAAGTTTCACGTTGATGCCTACGGACGAATAAAGTGTTCATGCAAGAGATGTTTGAATTTAAATTAGAGCTCATTAGAGGGTGTGGAACGACATCTACTGACTATTAGAATATCCCCCTACTACACAGAATGTGTGTATCATGAAGAGTCATTAAGCTCTAGAGGTACAGAAAACTTTGAGGAAAAAATGAGTAGCAATCCTTTTGATTAAGGAATTAGTAGTAGGCAATTTAATGAAGAAGGTGATATGTTTGGTATACTAAATGATTTACAAGCCTCTATTGAACATGAAGAAGAAACAGAGGAACTTCGTTTGGAAGATGAAATGCCGATGAATGTTGGAGTAGATATAGATGAAGATAGAACAAACAATATATTTCATGACTTATTGAATGAAGCACGTAATGAGTTGTACCTCAGTTGTTTTGAATTTTCGTCATTGAATTTTTTAGTTAAGTTGATGCATGTGAAAGTTATACATGGTTGGAGTAACAAGTCGTTCGACATGTTGTTAGAACTCTTAAGAGCAGCGTTTCCAATATGTAGTACTACTATCCCTAGTTCATTTTATGAAGCAAAACGAAAACTTCGTGATTTGGGCTTAGGATACGAGACTATTCACGCGTGCAAGTATGACTGTGTATTGTATTGGAAAGAGTTTGCTGATTTGCAACATTGTCCTACATGTGGCGAGGCTAGGTACAAGTGTAATCATAATAGAGAGAAAAAAAATTCTGCATAAGGTATTGCGTTGCTTTCCTTTGGTACCTAGATTATAGCGCTTGTTTGTATTGCAGGAAGGATCTGCTGACATGAGATGACATAGAGATAAACGTGTTGAAACAGATGATGTCTTGAGACATCCAGCTGATGCAGAGGGGTGAAAGCACTTTGATTCTGAATTTTCTGATTTTGCTTTTGATTCACGGAATGTAAGTTTGGGCTTGGCTTCAAATGGGTTTAACCCATTTGGTCAAATGAGTACCTCGTACAGTATGTGGCCTGTTGTGTTACTTTCTTAAAATTTGACATCATGGAAATGCATGAAAGAGACAAATTTCTTTATGTCATTGCTTATACCTGGTCCTAAATCTCCTGGTAGGGAAATTGATGTGTATCTCCAACATTTATTGAGGAATTGAAAGAGTTATGGACTTTTGGGGTACGTACGTATGACTCTCTTACAGGTCAATTCTTTCAGCTATACGCAGTCTTGTTGTGGACGATTAATGACTTTCCGGCGTATGGTGACCTATCAAGGTGGAGTACAAAGGGATATCAGGCTATTTAAGTGTCAGTGGTATGACATCAACGTAAACAAAAGTCAAAGAACACATATTGAAGTAGGGTACAAATCTCTCAACACATCCCGTTTTTGCTACGCGGAGGAACCTGTAATTCTTGCAACTCAAGCACTTCAAGCTTTTTACGTAGATGACCCAAAAAATGGTAACAATTGAAAAGTTGTGCAAGTTGTCCAAAATAAGCGTATATGGGACGTGCCAGAAGTGGAGGATGTTCAAAATGACCATATTAATGTACTAGAAATTTGTAATCCATCAAGTGGATGACCACATCGAGGATGACACTCTATGCAGAACTAACGTTGATCCCACAATCATTGAAAGATCGATTGTACATCATGTCACTGACGACTTCATCGACGATGTGGATGAACACTTGTCACATGCAAGCGAGGAAATTTATAGTAACAAACCACGTACCCACATATTTATGTAGTTTATATATTTTGATTCTAACTATGTGTTCGTATTTGCTTATTGAATGTTTATTTTCTATGTCCACAGCCATTATGTCATCGTCATATCTAAGTAATAATTTTATGGAGACGGACGCTATGTTCCTCGAGTTTGAGGACGATTTAGATAACATCGTGGGAGGGTCGTAGTCTGTGGGCGACAATACGGGTGAGTCTAAGAATTTCTTTCATTTTAACTTACTATTATTTCATGTTTTTTTCTAACATTATATGTTATTATCGATTTATTGAGCAGGGTCTTCTTCTCAACAACCTGCGACTCCAACTCCTAGGAGACGTGTACAGTCTCGACTTTTAGAGTTAGAGCGCCACATTGCAATAAATGGGCGCATTCCGATAACGATCGTCCCTGGAGCGGAGAAGGCTATTTCTCCACACGCCATTCGCTTCAGCCAGGCGATAGACATGTGCGTGCAAAAGAAATTTTCCGTCCACGACCTTAAGATGACGGACGTTGGGAGAGAATACATTGAGGTCGTCAAGGGCAACCTCCGGGTAATTAAGTGGACTACACATTTATGATTTCATTTAAAACATATCTAAGTTTAACCAATCTAATGTGTTATATTTGTAATGTGTAACGATTGTTTGTGCTTGATTTCAATGATCAAGCAATGAATAGGTTTGTTGAGCATCAGATGCTCATGATCTTTAAAGAGTTCCGGGCCGACTGTCACAGACATTTCAAAAAATACAGTGACCCGAAGGAGGCTCGTGCCAACCCACCAAACGCATTGGTTGGACGTTATGAGGATTGACACTTCCTCTGCGACCACTATATGAGCCGTGCATTCCAGGTATTTGTCATGATTAATTATGATAACAAGTTTTAATATGTATAAGAAATAAACAATATAATTGTTTTCATGCAGGAGTAA

mRNA sequence

ATGGATAAGGGGTCTTCTTCTCAACAACCTGCGACTCCAACTCCTAGGAGACGTGTACAGTCTCGACTTTTAGAGTTAGAGCGCCACATTGCAATAAATGGGCGCATTCCGATAACGATCGTCCCTGGAGCGGAGAAGGCTATTTCTCCACACGCCATTCGCTTCAGCCAGGCGATAGACATGTGCGTGCAAAAGAAATTTTCCGTCCACGACCTTAAGATGACGGACGTTGGGAGAGAATACATTGAGGTCGTCAAGGGCAACCTCCGGGAGTAA

Coding sequence (CDS)

ATGGATAAGGGGTCTTCTTCTCAACAACCTGCGACTCCAACTCCTAGGAGACGTGTACAGTCTCGACTTTTAGAGTTAGAGCGCCACATTGCAATAAATGGGCGCATTCCGATAACGATCGTCCCTGGAGCGGAGAAGGCTATTTCTCCACACGCCATTCGCTTCAGCCAGGCGATAGACATGTGCGTGCAAAAGAAATTTTCCGTCCACGACCTTAAGATGACGGACGTTGGGAGAGAATACATTGAGGTCGTCAAGGGCAACCTCCGGGAGTAA

Protein sequence

MDKGSSSQQPATPTPRRRVQSRLLELERHIAINGRIPITIVPGAEKAISPHAIRFSQAIDMCVQKKFSVHDLKMTDVGREYIEVVKGNLRE
Homology
[Close]
BLAST of MELO3C028794.2 vs. NCBI nr
Match: ADN34071.1 (CACTA en-spm transposon protein [Cucumis melo subsp. melo])

HSP 1 Score: 127.5 bits (319), Expect = 2.3e-26
Identity = 64/89 (71.91%), Postives = 72/89 (80.90%), Query Frame = 0 

Query: 2   DKGSSSQQPATPTPRRRVQSRLLELERHIAINGRIPITIVPGAEKAISPHAIRFSQAIDM 61
           D   SS Q ATPTPRRR QSRLLELERH+AING IP+TI PGAEK ISP+A+ FSQAI +
Sbjct: 26  DNTESSSQQATPTPRRRAQSRLLELERHVAINGCIPMTIAPGAEKPISPYAVHFSQAIGV 85

Query: 62  CVQKKFSVHDLKMTDVGREYIEVVKGNLR 91
           CV+K F V  LK  DVGREYIEVVKG+L+
Sbjct: 86  CVRKTFPVRCLKWVDVGREYIEVVKGDLQ 114

[Close]
BLAST of MELO3C028794.2 vs. NCBI nr
Match: XP_016901035.1 (PREDICTED: uncharacterized protein LOC107991153 [Cucumis melo] >XP_016901036.1 PREDICTED: uncharacterized protein LOC107991153 [Cucumis melo])

HSP 1 Score: 117.5 bits (293), Expect = 2.4e-23
Identity = 61/87 (70.11%), Postives = 68/87 (78.16%), Query Frame = 0 

Query: 4   GSSSQQPATPTPRRRVQSRLLELERHIAINGRIPITIVPGAEKAISPHAIRFSQAIDMCV 63
           GSSSQ PAT TPRRRVQSRLLELE H+ + G IP+ I PGAE  I P+AIRFSQAI +CV
Sbjct: 37  GSSSQPPATQTPRRRVQSRLLELECHVVVYGCIPMMIAPGAEMPIFPYAIRFSQAIGVCV 96

Query: 64  QKKFSVHDLKMTDVGREYIEVVKGNLR 91
           QK F V  LK  D+ REYIEVVKGNL+
Sbjct: 97  QKTFFVCYLKWADIDREYIEVVKGNLQ 123

[Close]
BLAST of MELO3C028794.2 vs. NCBI nr
Match: XP_016903164.1 (PREDICTED: uncharacterized protein LOC107992057 [Cucumis melo])

HSP 1 Score: 75.1 bits (183), Expect = 1.4e-10
Identity = 39/86 (45.35%), Postives = 55/86 (63.95%), Query Frame = 0 

Query: 5   SSSQQPATPTPRRRVQSRLLELERHIAINGRIPITIVPGAEKAISPHAIRFSQAIDMCVQ 64
           +++ QP   TPRR   SR LEL+R++A NG+I I IVPG +K ISP+ + FS  I +   
Sbjct: 288 TNASQPVARTPRRCEHSRNLELDRYVAQNGKILIFIVPGQDKRISPYVVHFSNTIGVLTG 347

Query: 65  KKFSVHDLKMTDVGREYIEVVKGNLR 91
             F V  LK  D+  EYIE++K +L+
Sbjct: 348 DTFLVRFLKWADMITEYIELIKSSLQ 373

[Close]
BLAST of MELO3C028794.2 vs. NCBI nr
Match: XP_011648549.1 (PREDICTED: (R)-mandelonitrile lyase 1-like [Cucumis sativus])

HSP 1 Score: 73.6 bits (179), Expect = 4.0e-10
Identity = 43/85 (50.59%), Postives = 53/85 (62.35%), Query Frame = 0 

Query: 2   DKGSSSQQPATPTPRRRVQSRLLELERHIAINGRIPITIVPGAEKAISPHAIRFSQAIDM 61
           +   +SQ   T T RRR  SR LELER+I  NG+I I+I    +K ISPH IRFS  ID+
Sbjct: 715 ETSDASQFTLTATLRRRQHSRNLELERYILQNGKILISIPLEGDKPISPHPIRFSCTIDV 774

Query: 62  CVQKKFSVHDLKMTDVGREYIEVVK 87
             +  F +  LK  DV +EYIEVVK
Sbjct: 775 LTRDTFPIQILKWVDVPQEYIEVVK 799

[Close]
BLAST of MELO3C028794.2 vs. NCBI nr
Match: XP_008465471.1 (PREDICTED: uncharacterized protein LOC103503078, partial [Cucumis melo])

HSP 1 Score: 67.4 bits (163), Expect = 2.9e-08
Identity = 36/56 (64.29%), Postives = 38/56 (67.86%), Query Frame = 0 

Query: 2   DKGSSSQQPATPTPRRRVQSRLLELERHIAINGRIPITIVPGAEKAISPHAIRFSQ 58
           D GS SQ   T TPRRRVQSRLLELER+   N  IP+ I PG  K IS H IRFSQ
Sbjct: 334 DPGSFSQPSVTSTPRRRVQSRLLELERYFTANRWIPMMIAPGTNKPISLHLIRFSQ 389

[Close]
BLAST of MELO3C028794.2 vs. TrEMBL
Match: tr|E5GC72|E5GC72_CUCME (CACTA en-spm transposon protein OS=Cucumis melo subsp. melo OX=412675 PE=4 SV=1)

HSP 1 Score: 127.5 bits (319), Expect = 1.5e-26
Identity = 64/89 (71.91%), Postives = 72/89 (80.90%), Query Frame = 0 

Query: 2   DKGSSSQQPATPTPRRRVQSRLLELERHIAINGRIPITIVPGAEKAISPHAIRFSQAIDM 61
           D   SS Q ATPTPRRR QSRLLELERH+AING IP+TI PGAEK ISP+A+ FSQAI +
Sbjct: 26  DNTESSSQQATPTPRRRAQSRLLELERHVAINGCIPMTIAPGAEKPISPYAVHFSQAIGV 85

Query: 62  CVQKKFSVHDLKMTDVGREYIEVVKGNLR 91
           CV+K F V  LK  DVGREYIEVVKG+L+
Sbjct: 86  CVRKTFPVRCLKWVDVGREYIEVVKGDLQ 114

[Close]
BLAST of MELO3C028794.2 vs. TrEMBL
Match: tr|A0A1S4DZ93|A0A1S4DZ93_CUCME (uncharacterized protein LOC107991153 OS=Cucumis melo OX=3656 GN=LOC107991153 PE=4 SV=1)

HSP 1 Score: 117.5 bits (293), Expect = 1.6e-23
Identity = 61/87 (70.11%), Postives = 68/87 (78.16%), Query Frame = 0 

Query: 4   GSSSQQPATPTPRRRVQSRLLELERHIAINGRIPITIVPGAEKAISPHAIRFSQAIDMCV 63
           GSSSQ PAT TPRRRVQSRLLELE H+ + G IP+ I PGAE  I P+AIRFSQAI +CV
Sbjct: 37  GSSSQPPATQTPRRRVQSRLLELECHVVVYGCIPMMIAPGAEMPIFPYAIRFSQAIGVCV 96

Query: 64  QKKFSVHDLKMTDVGREYIEVVKGNLR 91
           QK F V  LK  D+ REYIEVVKGNL+
Sbjct: 97  QKTFFVCYLKWADIDREYIEVVKGNLQ 123

[Close]
BLAST of MELO3C028794.2 vs. TrEMBL
Match: tr|A0A1S4E4L2|A0A1S4E4L2_CUCME (uncharacterized protein LOC107992057 OS=Cucumis melo OX=3656 GN=LOC107992057 PE=4 SV=1)

HSP 1 Score: 75.1 bits (183), Expect = 9.1e-11
Identity = 39/86 (45.35%), Postives = 55/86 (63.95%), Query Frame = 0 

Query: 5   SSSQQPATPTPRRRVQSRLLELERHIAINGRIPITIVPGAEKAISPHAIRFSQAIDMCVQ 64
           +++ QP   TPRR   SR LEL+R++A NG+I I IVPG +K ISP+ + FS  I +   
Sbjct: 288 TNASQPVARTPRRCEHSRNLELDRYVAQNGKILIFIVPGQDKRISPYVVHFSNTIGVLTG 347

Query: 65  KKFSVHDLKMTDVGREYIEVVKGNLR 91
             F V  LK  D+  EYIE++K +L+
Sbjct: 348 DTFLVRFLKWADMITEYIELIKSSLQ 373

[Close]
BLAST of MELO3C028794.2 vs. TrEMBL
Match: tr|A0A1S3CQF6|A0A1S3CQF6_CUCME (uncharacterized protein LOC103503078 OS=Cucumis melo OX=3656 GN=LOC103503078 PE=4 SV=1)

HSP 1 Score: 67.4 bits (163), Expect = 1.9e-08
Identity = 36/56 (64.29%), Postives = 38/56 (67.86%), Query Frame = 0 

Query: 2   DKGSSSQQPATPTPRRRVQSRLLELERHIAINGRIPITIVPGAEKAISPHAIRFSQ 58
           D GS SQ   T TPRRRVQSRLLELER+   N  IP+ I PG  K IS H IRFSQ
Sbjct: 334 DPGSFSQPSVTSTPRRRVQSRLLELERYFTANRWIPMMIAPGTNKPISLHLIRFSQ 389

The following BLAST results are available for this feature:
BLAST of MELO3C028794.2 vs. NCBI nr
Match NameE-valueIdentityDescription
ADN34071.12.3e-2671.91CACTA en-spm transposon protein [Cucumis melo subsp. melo][more]
XP_016901035.12.4e-2370.11PREDICTED: uncharacterized protein LOC107991153 [Cucumis melo] >XP_016901036.1 P... [more]
XP_016903164.11.4e-1045.35PREDICTED: uncharacterized protein LOC107992057 [Cucumis melo][more]
XP_011648549.14.0e-1050.59PREDICTED: (R)-mandelonitrile lyase 1-like [Cucumis sativus][more]
XP_008465471.12.9e-0864.29PREDICTED: uncharacterized protein LOC103503078, partial [Cucumis melo][more]
BLAST of MELO3C028794.2 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of MELO3C028794.2 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of MELO3C028794.2 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|E5GC72|E5GC72_CUCME1.5e-2671.91CACTA en-spm transposon protein OS=Cucumis melo subsp. melo OX=412675 PE=4 SV=1[more]
tr|A0A1S4DZ93|A0A1S4DZ93_CUCME1.6e-2370.11uncharacterized protein LOC107991153 OS=Cucumis melo OX=3656 GN=LOC107991153 PE=... [more]
tr|A0A1S4E4L2|A0A1S4E4L2_CUCME9.1e-1145.35uncharacterized protein LOC107992057 OS=Cucumis melo OX=3656 GN=LOC107992057 PE=... [more]
tr|A0A1S3CQF6|A0A1S3CQF6_CUCME1.9e-0864.29uncharacterized protein LOC103503078 OS=Cucumis melo OX=3656 GN=LOC103503078 PE=... [more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003824 catalytic activity
molecular_function GO:0030170 pyridoxal phosphate binding
molecular_function GO:0008483 transaminase activity
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C028794.2.1MELO3C028794.2.1mRNA


InterPro
Analysis Name: InterPro Annotations of melon v3.6.1
Date Performed: 2018-09-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 85..91

Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
MELO3C028794.2Cucurbita pepo (Zucchini)cpemedB594