MELO3C028780.2 (gene) Melon (DHL92) v3.6.1

Overview
NameMELO3C028780.2
Typegene
OrganismCucumis melo (Melon (DHL92) v3.6.1)
DescriptionNBS-LRR type resistance protein
Locationchr01 : 6831981 .. 6833156 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
AATGTTTGTTTTCTATGTCCACAGGCATTATGTTATCGTCATATCCACGTCATAATTTTCTGGAAACGGACGCTATGTTCCTCGAGTTTGAGGACGAGTTAGATAACTTTGCGGGAGGGTTGTCCTCCACGGCGACAATGCGGGTGAGTACAAAAATTTCTTTCATTTTAACTTACGATTATTTCATGTTTTTTTCTCTAACATTATATTAAGCAGGGTCGTCTTCTCAATAACCTAGGACTCCGACTTCTTAGAGACGTGCGCAGTCTCGACTCTTAGAGTTGGAGCGCCATGTTGCAGTACATGGGCGCATTCCGATGACGATCGCCCCTGGTGCGAAGAAACCTATTTTCCCATAAGCCGTTCGCTTCAACCAGGCGATAGGCGTGTGCGTGCGAAAGACATTTTCCATCCACTGCCCTAAGTGGGTGGACGTTGGCAGAGAATACATTGAGGTTGTCAAGGGCGACCTCCAAGTAATTAAGTCCATTACACATTTATGATTTCATTTGAAACATATCTAAGTTAACCAATCTAATGTGTTATTTTTGTAATGTGTAGCGGTTTTTTGTGCTTGATTTTAATGATCAAACAATGAAATATGTTTGTTGAGCATCAGATGCTCACCACCTTTAAAGAGTTCTGGGCCGACTGTCACAGACACATAAAAAAGTATAGCTACCCCAAGGAGGCTCATGCCAACCCACCAAACATATTGGTTGGATGTCATGAGGATTGACACTTTCTCTATGATCACTACATGAGCCATGCATTCTAGGTATTTATCATGATTAATTATGATTTCAATTTTTAATATGTATAAGAAATAAACAATATAATTGATTTCATGCAGGAGCAATCACGGACGAACAAGGTTGCTAGACAGAAGCAGCTTTACAATCGTAGCAGTGGGACAAAGTCGTTTTTACAATGACAGCACGAGCTCGCTGAGAAGAAAGGGGAGTCGGTCGACTGTGTGGAGTTGTTTCGAAAAACACACGTTTGAGCCGGGACGTTCGTGTCGCAGGCCGGAGAGGATGAGCATGTAAGTTATTGAACCAACACTTATGCCTTTATTAATTATATCCTCTTTCTTTATATTTTTGAGTTACCTAACTTAGTTTTTAAAATTGTTGCAGAATCAAATGCTGGAACTCCAATCCTAGCCTACCCTAG

mRNA sequence

AATGTTTGTTTTCTATGTCCACAGGCATTATGTTATCGTCATATCCACGTCATAATTTTCTGGAAACGGACGCTATGTTCCTCGAGTTTGAGGACGAGTTAGATAACTTTGCGGGAGGGTTGTCCTCCACGGCGACAATGCGGGGTCGTCTTCTCAATAACCTAGGACTCCGACTTCTTAGAGACGTGCGCAGTCTCGACTCTTAGAGTTGGAGCGCCATGTTGCAGTACATGGGCGCATTCCGATGACGATCGCCCCTGGTGCGAAGAAACCTATTTTCCCATAAGCCGTTCGCTTCAACCAGGCGATAGGCGTGTGCGTGCGAAAGACATTTTCCATCCACTGCCCTAAGTGGGTGGACGTTGGCAGAGAATACATTGAGGTTGTCAAGGGCGACCTCCAAGTAATTAAGTCCATTACACATTTATGATTTCATTTGAAACATATCTAAGTTAACCAATCTAATGTGTTATTTTTGTAATGTGTAGCGGTTTTTTGTGCTTGATTTTAATGATCAAACAATGAAATATGTTTGTTGAGCATCAGATGCTCACCACCTTTAAAGAGTTCTGGGCCGACTGTCACAGACACATAAAAAAGTATAGCTACCCCAAGGAGGCTCATGCCAACCCACCAAACATATTGGTTGGATGTCATGAGGATTGACACTTTCTCTATGATCACTACATGAGCCATGCATTCTAGGAGCAATCACGGACGAACAAGGTTGCTAGACAGAAGCAGCTTTACAATCGTAGCAGTGGGACAAAGTCGTTTTTACAATGACAGCACGAGCTCGCTGAGAAGAAAGGGGAGTCGGTCGACTGTGTGGAGTTGTTTCGAAAAACACACGTTTGAGCCGGGACGTTCGTGTCGCAGGCCGGAGAGGATGAGCATAATCAAATGCTGGAACTCCAATCCTAGCCTACCCTAG

Coding sequence (CDS)

ATGCATTCTAGGAGCAATCACGGACGAACAAGGTTGCTAGACAGAAGCAGCTTTACAATCGTAGCAGTGGGACAAAGTCGTTTTTACAATGACAGCACGAGCTCGCTGAGAAGAAAGGGGAGTCGGTCGACTGTGTGGAGTTGTTTCGAAAAACACACGTTTGAGCCGGGACGTTCGTGTCGCAGGCCGGAGAGGATGAGCATAATCAAATGCTGGAACTCCAATCCTAGCCTACCCTAG

Protein sequence

MHSRSNHGRTRLLDRSSFTIVAVGQSRFYNDSTSSLRRKGSRSTVWSCFEKHTFEPGRSCRRPERMSIIKCWNSNPSLP
Homology
[Close]
BLAST of MELO3C028780.2 vs. NCBI nr
Match: ADN34241.1 (NBS-LRR type resistance protein [Cucumis melo subsp. melo])

HSP 1 Score: 126.3 bits (316), Expect = 4.5e-26
Identity = 59/79 (74.68%), Postives = 64/79 (81.01%), Query Frame = 0 

Query: 1  MHSRSNHGRTRLLDRSSFTIVAVGQSRFYNDSTSSLRRKGSRSTVWSCFEKHTFEPGRSC 60
          +HSRSNH RTRLLDRSS TI+  G S FYNDS SSL+ +GSRS VW+C EKHTFE G SC
Sbjct: 14 VHSRSNHRRTRLLDRSSLTIIVAGPSHFYNDSMSSLKEEGSRSIVWNCSEKHTFELGHSC 73

Query: 61 RRPERMSIIKCWNSNPSLP 80
          RR  RM IIKCWNSNPSLP
Sbjct: 74 RRLPRMRIIKCWNSNPSLP 92

[Close]
BLAST of MELO3C028780.2 vs. TrEMBL
Match: tr|E5GCP2|E5GCP2_CUCME (NBS-LRR type resistance protein OS=Cucumis melo subsp. melo OX=412675 PE=4 SV=1)

HSP 1 Score: 126.3 bits (316), Expect = 3.0e-26
Identity = 59/79 (74.68%), Postives = 64/79 (81.01%), Query Frame = 0 

Query: 1  MHSRSNHGRTRLLDRSSFTIVAVGQSRFYNDSTSSLRRKGSRSTVWSCFEKHTFEPGRSC 60
          +HSRSNH RTRLLDRSS TI+  G S FYNDS SSL+ +GSRS VW+C EKHTFE G SC
Sbjct: 14 VHSRSNHRRTRLLDRSSLTIIVAGPSHFYNDSMSSLKEEGSRSIVWNCSEKHTFELGHSC 73

Query: 61 RRPERMSIIKCWNSNPSLP 80
          RR  RM IIKCWNSNPSLP
Sbjct: 74 RRLPRMRIIKCWNSNPSLP 92

The following BLAST results are available for this feature:
BLAST of MELO3C028780.2 vs. NCBI nr
Match NameE-valueIdentityDescription
ADN34241.14.5e-2674.68NBS-LRR type resistance protein [Cucumis melo subsp. melo][more]
BLAST of MELO3C028780.2 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of MELO3C028780.2 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of MELO3C028780.2 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|E5GCP2|E5GCP2_CUCME3.0e-2674.68NBS-LRR type resistance protein OS=Cucumis melo subsp. melo OX=412675 PE=4 SV=1[more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C028780.2.1MELO3C028780.2.1mRNA


Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
MELO3C028780.2Cucumber (Gy14) v2cgybmedB461
MELO3C028780.2Cucumber (Gy14) v1cgymedB084
MELO3C028780.2Cucurbita maxima (Rimu)cmamedB021
MELO3C028780.2Cucurbita moschata (Rifu)cmomedB010
MELO3C028780.2Cucurbita moschata (Rifu)cmomedB448
MELO3C028780.2Cucurbita pepo (Zucchini)cpemedB594
MELO3C028780.2Cucurbita pepo (Zucchini)cpemedB849
MELO3C028780.2Wild cucumber (PI 183967)cpimedB517
MELO3C028780.2Cucumber (Chinese Long) v2cumedB506
MELO3C028780.2Bottle gourd (USVL1VR-Ls)lsimedB200
MELO3C028780.2Watermelon (Charleston Gray)medwcgB179
MELO3C028780.2Watermelon (97103) v1medwmB208
MELO3C028780.2Silver-seed gourdcarmedB0304
MELO3C028780.2Silver-seed gourdcarmedB0994
MELO3C028780.2Cucumber (Chinese Long) v3cucmedB532
MELO3C028780.2Watermelon (97103) v2medwmbB219
MELO3C028780.2Wax gourdmedwgoB242
MELO3C028780.2Wax gourdmedwgoB252