MELO3C028709.2 (gene) Melon (DHL92) v3.6.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C028709.2
Type	gene
Organism	Cucumis melo (Melon (DHL92) v3.6.1)
Description	Cytochrome P450
Location	chr01 : 15429190 .. 15429882 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GTTATGGTGGCTATCCTGCACTTATGGTAGCCTCTGGAGTTTGAAGTTAATTTTAGTAAAAAAATTTGGAGATTGTTTATTCATGGGATTAAGTTTAAGATGTGAGAGGAGGAATATACTTCTAATCAAACCTATTTATGTGTTAAGGGCTTTAACGATGGACAAGGGTTGGATGAAACTTAAGAATAAGTTTTTCATTGAGTATAGAGAGGGAGTGACCCAATTTTTAGAAGCTTTCAAGTTTCACGTTGATGCCTACAGACGAATAAGGTGCCCATGCAAGAGATGTATGAATTCAAATTGAAACTCATTAGAGGGTATGGAACGACATCTACTTACTATTGGAATATCCCCTTACTACACAGAATGAGTGTATCATAGAGAGTCAGTTAGCTTTAGAAGTACAAAAAACTTGATGAAGGAACTAGTAGTAACCTTTTTTATGAAGGAACTGGTAGTAGCAATTTCATGAAGAAGATGATATGTTTGATATGTTGAATCATTTACAAGCCCCGATTGAATAGGAATAGGAAACATAGGAAAGTCATTTGGAGGATGAAATACCAAGGAATATTAGGATAGATATAGAACAAGATACAACAAACATATTTTATGACTTATTGAATGAAGCACGTAATAAGTTCTACCCCAATTGTTCTGAACTTTTCTTCTTGAATTTTTTGGTTAAGTTGA

mRNA sequence

GTTATGGTGGCTATCCTGCACTTATGGGGCTTTAACGATGGACAAGGGTTGGATGAAACTTAAGAATAAGTTTTTCATTGAGTATAGAGAGGGAGTGACCCAATTTTTAGAAGCTTTCAAGTTTCACGTTGATGCCTACAGACGAATAAGGTGCCCATGCAAGAGATGTATGAATTCAAATTGAAACTCATTAGAGGGTATGGAACGACATCTACTTACTATTGGAATATCCCCTTACTACACAGAATGAGTGTATCATAGAGAGTCAGTTAGCTTTAGAAGTACAAAAAACTTGATGAAGGAACTAGTAGTAACCTTTTTTATGAAGGAACTGGTAGTAGCAATTTCATGAAGAAGATGATATGTTTGATATGTTGAATCATTTACAAGCCCCGATTGAATAGGAATAGGAAACATAGGAAAGTCATTTGGAGGATGAAATACCAAGGAATATTAGGATAGATATAGAACAAGATACAACAAACATATTTTATGACTTATTGAATGAAGCACGTAATAAGTTCTACCCCAATTGTTCTGAACTTTTCTTCTTGAATTTTTTGGTTAAGTTGA

Coding sequence (CDS)

ATGGACAAGGGTTGGATGAAACTTAAGAATAAGTTTTTCATTGAGTATAGAGAGGGAGTGACCCAATTTTTAGAAGCTTTCAAGTTTCACGTTGATGCCTACAGACGAATAAGGTGCCCATGCAAGAGATGTATGAATTCAAATTGA

Protein sequence

MDKGWMKLKNKFFIEYREGVTQFLEAFKFHVDAYRRIRCPCKRCMNSN

Homology

[Close]

BLAST of MELO3C028709.2 vs. NCBI nr
Match: XP_021635728.1 (uncharacterized protein LOC110631975 [Hevea brasiliensis])

HSP 1 Score: 60.8 bits (146), Expect = 1.4e-06
Identity = 27/46 (58.70%), Postives = 31/46 (67.39%), Query Frame = 0


Query: 1  MDKGWMKLKNKFFIEYREGVTQFLEAFKFHVDAYRRIRCPCKRCMN 47
          MD+ WM  KNKF  EY +GV  FL+  K HVD+  RIRCPCK C N
Sbjct: 1  MDRSWMLNKNKFSSEYIQGVRSFLDVAKQHVDSSGRIRCPCKNCNN 46

[Close]

BLAST of MELO3C028709.2 vs. NCBI nr
Match: XP_008464022.1 (PREDICTED: uncharacterized protein LOC103502005 [Cucumis melo])

HSP 1 Score: 59.7 bits (143), Expect = 3.2e-06
Identity = 26/36 (72.22%), Postives = 30/36 (83.33%), Query Frame = 0


Query: 1  MDKGWMKLKNKFFIEYREGVTQFLEAFKFHVDAYRR 37
          MDKG MKL++KF +EYREGV QFLE  KFH+D YRR
Sbjct: 1  MDKGLMKLRDKFLVEYREGVFQFLEVVKFHIDDYRR 36

[Close]

BLAST of MELO3C028709.2 vs. NCBI nr
Match: XP_024023057.1 (uncharacterized protein LOC112092090 [Morus notabilis])

HSP 1 Score: 52.4 bits (124), Expect = 5.0e-04
Identity = 20/46 (43.48%), Postives = 31/46 (67.39%), Query Frame = 0


Query: 1  MDKGWMKLKNKFFIEYREGVTQFLEAFKFHVDAYRRIRCPCKRCMN 47
          MDK W+ + N+    Y +GV +F+E  + H+DA  + RCPCK+C+N
Sbjct: 1  MDKSWIYVTNRISETYMDGVRRFIEQARNHLDADGKCRCPCKKCLN 46

[Close]

BLAST of MELO3C028709.2 vs. NCBI nr
Match: BAJ33519.1 (CACTA transposable element [Dahlia pinnata])

HSP 1 Score: 51.6 bits (122), Expect = 8.6e-04
Identity = 19/47 (40.43%), Postives = 31/47 (65.96%), Query Frame = 0


Query: 1  MDKGWMKLKNKFFIEYREGVTQFLEAFKFHVDAYRRIRCPCKRCMNS 48
          +DK W+ ++N+   EY +G+T F+E  K HVD+   +RC C +C N+
Sbjct: 30 VDKSWLSIRNRRSPEYEQGLTSFIEMCKEHVDSRGYVRCACAKCQNT 76

[Close]

BLAST of MELO3C028709.2 vs. NCBI nr
Match: XP_024195851.1 (uncharacterized protein LOC112199012 [Rosa chinensis])

HSP 1 Score: 51.6 bits (122), Expect = 8.6e-04
Identity = 23/46 (50.00%), Postives = 28/46 (60.87%), Query Frame = 0


Query: 1  MDKGWMKLKNKFFIEYREGVTQFLEAFKFHVDAYRRIRCPCKRCMN 47
          MD+ W+K  NK   EY+ GV  FLE    HVD   R RCPC +C+N
Sbjct: 1  MDRKWIKNLNKLSDEYKCGVQSFLEVASKHVDVKGRTRCPCIKCLN 46

[Close]

BLAST of MELO3C028709.2 vs. TrEMBL
Match: tr|A0A1S3CKI4|A0A1S3CKI4_CUCME (uncharacterized protein LOC103502005 OS=Cucumis melo OX=3656 GN=LOC103502005 PE=4 SV=1)

HSP 1 Score: 59.7 bits (143), Expect = 2.1e-06
Identity = 26/36 (72.22%), Postives = 30/36 (83.33%), Query Frame = 0


Query: 1  MDKGWMKLKNKFFIEYREGVTQFLEAFKFHVDAYRR 37
          MDKG MKL++KF +EYREGV QFLE  KFH+D YRR
Sbjct: 1  MDKGLMKLRDKFLVEYREGVFQFLEVVKFHIDDYRR 36

[Close]

BLAST of MELO3C028709.2 vs. TrEMBL
Match: tr|A0A2N9FFB4|A0A2N9FFB4_FAGSY (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS13602 PE=4 SV=1)

HSP 1 Score: 55.8 bits (133), Expect = 3.0e-05
Identity = 22/46 (47.83%), Postives = 30/46 (65.22%), Query Frame = 0


Query: 1  MDKGWMKLKNKFFIEYREGVTQFLEAFKFHVDAYRRIRCPCKRCMN 47
          MDK WM+  N+F   Y EGV +F+   + HVD   RI+CPC+ C+N
Sbjct: 1  MDKSWMQESNRFGNRYIEGVNEFISMARSHVDGLDRIKCPCRSCLN 46

[Close]

BLAST of MELO3C028709.2 vs. TrEMBL
Match: tr|A0A2N9G2W8|A0A2N9G2W8_FAGSY (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS21296 PE=4 SV=1)

HSP 1 Score: 55.8 bits (133), Expect = 3.0e-05
Identity = 22/46 (47.83%), Postives = 30/46 (65.22%), Query Frame = 0


Query: 1  MDKGWMKLKNKFFIEYREGVTQFLEAFKFHVDAYRRIRCPCKRCMN 47
          MDK WM+  N+F   Y EGV +F+   + HVD   RI+CPC+ C+N
Sbjct: 1  MDKSWMQESNRFGNRYIEGVNEFISMARSHVDGLDRIKCPCRSCLN 46

[Close]

BLAST of MELO3C028709.2 vs. TrEMBL
Match: tr|A0A2N9G377|A0A2N9G377_FAGSY (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS21681 PE=4 SV=1)

HSP 1 Score: 55.8 bits (133), Expect = 3.0e-05
Identity = 22/46 (47.83%), Postives = 30/46 (65.22%), Query Frame = 0


Query: 1  MDKGWMKLKNKFFIEYREGVTQFLEAFKFHVDAYRRIRCPCKRCMN 47
          MDK WM+  N+F   Y EGV +F+   + HVD   RI+CPC+ C+N
Sbjct: 1  MDKSWMQESNRFGNRYIEGVNEFISMARSHVDGLDRIKCPCRSCLN 46

[Close]

BLAST of MELO3C028709.2 vs. TrEMBL
Match: tr|E3WHA2|E3WHA2_DAHPI (CACTA transposable element OS=Dahlia pinnata OX=101596 GN=Tdv1 PE=4 SV=1)

HSP 1 Score: 51.6 bits (122), Expect = 5.7e-04
Identity = 19/47 (40.43%), Postives = 31/47 (65.96%), Query Frame = 0


Query: 1  MDKGWMKLKNKFFIEYREGVTQFLEAFKFHVDAYRRIRCPCKRCMNS 48
          +DK W+ ++N+   EY +G+T F+E  K HVD+   +RC C +C N+
Sbjct: 30 VDKSWLSIRNRRSPEYEQGLTSFIEMCKEHVDSRGYVRCACAKCQNT 76

The following BLAST results are available for this feature:

BLAST of MELO3C028709.2 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_021635728.1	1.4e-06	58.70	uncharacterized protein LOC110631975 [Hevea brasiliensis]	[more]
XP_008464022.1	3.2e-06	72.22	PREDICTED: uncharacterized protein LOC103502005 [Cucumis melo]	[more]
XP_024023057.1	5.0e-04	43.48	uncharacterized protein LOC112092090 [Morus notabilis]	[more]
BAJ33519.1	8.6e-04	40.43	CACTA transposable element [Dahlia pinnata]	[more]
XP_024195851.1	8.6e-04	50.00	uncharacterized protein LOC112199012 [Rosa chinensis]	[more]

BLAST of MELO3C028709.2 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of MELO3C028709.2 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of MELO3C028709.2 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3CKI4\|A0A1S3CKI4_CUCME	2.1e-06	72.22	uncharacterized protein LOC103502005 OS=Cucumis melo OX=3656 GN=LOC103502005 PE=...	[more]
tr\|A0A2N9FFB4\|A0A2N9FFB4_FAGSY	3.0e-05	47.83	Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS13602 PE=4 SV=1	[more]
tr\|A0A2N9G2W8\|A0A2N9G2W8_FAGSY	3.0e-05	47.83	Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS21296 PE=4 SV=1	[more]
tr\|A0A2N9G377\|A0A2N9G377_FAGSY	3.0e-05	47.83	Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS21681 PE=4 SV=1	[more]
tr\|E3WHA2\|E3WHA2_DAHPI	5.7e-04	40.43	CACTA transposable element OS=Dahlia pinnata OX=101596 GN=Tdv1 PE=4 SV=1	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR029480	Transpos_assoc

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0055114	oxidation-reduction process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0020037	heme binding
molecular_function	GO:0005506	iron ion binding
molecular_function	GO:0016705	oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C028709.2.1	MELO3C028709.2.1	mRNA

InterPro

Analysis Name: InterPro Annotations of melon v3.6.1
Date Performed: 2018-09-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR029480	Transposase-associated domain	PFAM	PF13963	Transpos_assoc	coord: 3..47 e-value: 1.1E-10 score: 41.7

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
MELO3C028709.2	Cucurbita maxima (Rimu)	cmamedB463
MELO3C028709.2	Cucurbita moschata (Rifu)	cmomedB003
MELO3C028709.2	Cucurbita moschata (Rifu)	cmomedB451
MELO3C028709.2	Cucurbita pepo (Zucchini)	cpemedB591
MELO3C028709.2	Cucurbita pepo (Zucchini)	cpemedB844
MELO3C028709.2	Silver-seed gourd	carmedB1012
MELO3C028709.2	Cucurbita maxima (Rimu)	cmamedB015