MELO3C028673.2 (gene) Melon (DHL92) v3.6.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C028673.2
Type	gene
Organism	Cucumis melo (Melon (DHL92) v3.6.1)
Description	Protein transport inhibitor response 1
Location	chr01 : 11141108 .. 11141622 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CGGCTAACTGTTGACTGAACCAGGAATTTGAAAGTATTGGACTTACGAGGGAGTGATGTGGAAGATCTGAATGGGCATTGGCTCAGCCATTTTCCTGATACATATACGTCATTGGTATCTCTCAATATTGCTTGTTTGGGGTCTGAGGTGAGTGTATCAGCACTGAAGCGTCTAGTGGACAGGTGTCCAAACTTAAGGACACTGCATCTCAATCGTCCAGTTCCCCTTGATAGGCATGCCAACCTACTTCGTCGTGCCCCTCAGCTGGTTGAGTTTGGTGCTGGATGCTATATGGCTGACTTGAGATCTGAAGTTTTTTCGAGCTTAACTGGGGCATTTACAAGCTGCACAGAATTGAAGAGTCTGTCAGGATTTTGGGATGTTGTCCCTGCATACCTTCCTTTCGTTTATCCAACATGCTCTCGGCTAACATCCTTAAACTTAAGCTATGCTACAATTCATGTGACGATCTTACAAAGCTTATCAGTCAATGTCATAATTTACAGAAGCTTTGG

mRNA sequence

CGGCTAACTGTTGACTGAACCAGGAATTTGAAAGTATTGGACTTACGAGGGAGTGATGTGGAAGATCTGAATGGGCATTGGCTCAGCCATTTTCCTGATACATATACGTCATTGGTATCTCTCAATATTGCTTGTTTGGGGTCTGAGGTGAGTGTATCAGCACTGAAGCGTCTAGTGGACAGGTGTCCAAACTTAAGGACACTGCATCTCAATCGTCCAGTTCCCCTTGATAGGCATGCCAACCTACTTCGTCGTGCCCCTCAGCTGGTTGAGTTTGGTGCTGGATGCTATATGGCTGACTTGAGATCTGAAGTTTTTTCGAGCTTAACTGGGGCATTTACAAGCTGCACAGAATTGAAGAGTCTGTCAGGATTTTGGGATGTTGTCCCTGCATACCTTCCTTTCGTTTATCCAACATGCTCTCGGCTAACATCCTTAAACTTAAGCTATGCTACAATTCATGTGACGATCTTACAAAGCTTATCAGTCAATGTCATAATTTACAGAAGCTTTGG

Coding sequence (CDS)

ATGGCTGACTTGAGATCTGAAGTTTTTTCGAGCTTAACTGGGGCATTTACAAGCTGCACAGAATTGAAGAGTCTGTCAGGATTTTGGGATGTTGTCCCTGCATACCTTCCTTTCGTTTATCCAACATGCTCTCGGCTAACATCCTTAAACTTAAGCTATGCTACAATTCATGTGACGATCTTACAAAGCTTATCAGTCAATGTCATAATTTACAGAAGCTTT

Protein sequence

MADLRSEVFSSLTGAFTSCTELKSLSGFWDVVPAYLPFVYPTCSRLTSLNLSYATIHVTILQSLSVNVIIYRSF

Homology

[Close]

BLAST of MELO3C028673.2 vs. NCBI nr
Match: XP_008451438.1 (PREDICTED: protein TRANSPORT INHIBITOR RESPONSE 1 [Cucumis melo])

HSP 1 Score: 111.3 bits (277), Expect = 1.4e-21
Identity = 57/64 (89.06%), Postives = 57/64 (89.06%), Query Frame = 0


Query: 1   MADLRSEVFSSLTGAFTSCTELKSLSGFWDVVPAYLPFVYPTCSRLTSLNLSYATIHVTI 60
           MADLRSEVFSSLTGAFTSCTELKSLSGFWDVVPAYLP VYPTCSRLTSLNLSYATI    
Sbjct: 245 MADLRSEVFSSLTGAFTSCTELKSLSGFWDVVPAYLPSVYPTCSRLTSLNLSYATIQCDD 304

Query: 61  LQSL 65
           L  L
Sbjct: 305 LTKL 308

[Close]

BLAST of MELO3C028673.2 vs. NCBI nr
Match: NP_001267546.1 (protein TRANSPORT INHIBITOR RESPONSE 1-like [Cucumis sativus] >AGA63733.1 transport inhibitor response 1 [Cucumis sativus] >AGI15227.1 transport inhibitor response protein [Cucumis sativus] >KGN44877.1 hypothetical protein Csa_7G393970 [Cucumis sativus])

HSP 1 Score: 107.8 bits (268), Expect = 1.6e-20
Identity = 55/63 (87.30%), Postives = 56/63 (88.89%), Query Frame = 0


Query: 2   ADLRSEVFSSLTGAFTSCTELKSLSGFWDVVPAYLPFVYPTCSRLTSLNLSYATIHVTIL 61
           ADLRSEVFSSLTGAFTSCTELKSLSGFWDVVPAYLP VYPTCS+LTSLNLSYATI    L
Sbjct: 246 ADLRSEVFSSLTGAFTSCTELKSLSGFWDVVPAYLPSVYPTCSQLTSLNLSYATIQCDDL 305

Query: 62  QSL 65
             L
Sbjct: 306 TKL 308

[Close]

BLAST of MELO3C028673.2 vs. NCBI nr
Match: XP_022953789.1 (protein TRANSPORT INHIBITOR RESPONSE 1-like [Cucurbita moschata])

HSP 1 Score: 105.9 bits (263), Expect = 5.9e-20
Identity = 54/63 (85.71%), Postives = 55/63 (87.30%), Query Frame = 0


Query: 2   ADLRSEVFSSLTGAFTSCTELKSLSGFWDVVPAYLPFVYPTCSRLTSLNLSYATIHVTIL 61
           ADLRSEVFS+LTGAFTSCTELKSLSGFWDVVPAYLP VYPTCSRLTSLNLSYA I    L
Sbjct: 246 ADLRSEVFSNLTGAFTSCTELKSLSGFWDVVPAYLPSVYPTCSRLTSLNLSYAIIQCDDL 305

Query: 62  QSL 65
             L
Sbjct: 306 TKL 308

[Close]

BLAST of MELO3C028673.2 vs. NCBI nr
Match: XP_023548515.1 (protein TRANSPORT INHIBITOR RESPONSE 1-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 105.9 bits (263), Expect = 5.9e-20
Identity = 54/63 (85.71%), Postives = 55/63 (87.30%), Query Frame = 0


Query: 2   ADLRSEVFSSLTGAFTSCTELKSLSGFWDVVPAYLPFVYPTCSRLTSLNLSYATIHVTIL 61
           ADLRSEVFS+LTGAFTSCTELKSLSGFWDVVPAYLP VYPTCSRLTSLNLSYA I    L
Sbjct: 246 ADLRSEVFSNLTGAFTSCTELKSLSGFWDVVPAYLPSVYPTCSRLTSLNLSYAIIQCDDL 305

Query: 62  QSL 65
             L
Sbjct: 306 TKL 308

[Close]

BLAST of MELO3C028673.2 vs. NCBI nr
Match: XP_022959995.1 (protein TRANSPORT INHIBITOR RESPONSE 1-like [Cucurbita moschata])

HSP 1 Score: 103.6 bits (257), Expect = 2.9e-19
Identity = 53/63 (84.13%), Postives = 55/63 (87.30%), Query Frame = 0


Query: 2   ADLRSEVFSSLTGAFTSCTELKSLSGFWDVVPAYLPFVYPTCSRLTSLNLSYATIHVTIL 61
           ADLRS+VFS+LT AFTSCTELKSLSGFWDVVPAYLP VYPTCSRLTSLNLSYATI    L
Sbjct: 246 ADLRSDVFSNLTTAFTSCTELKSLSGFWDVVPAYLPSVYPTCSRLTSLNLSYATIQSDDL 305

Query: 62  QSL 65
             L
Sbjct: 306 TKL 308

[Close]

BLAST of MELO3C028673.2 vs. TAIR10
Match: AT3G62980.1 (F-box/RNI-like superfamily protein)

HSP 1 Score: 77.4 bits (189), Expect = 4.1e-15
Identity = 35/55 (63.64%), Postives = 44/55 (80.00%), Query Frame = 0


Query: 2   ADLRSEVFSSLTGAFTSCTELKSLSGFWDVVPAYLPFVYPTCSRLTSLNLSYATI 57
           A++R +V+S L+ A + C EL+ LSGFWD VPAYLP VY  CSRLT+LNLSYAT+
Sbjct: 247 AEVRPDVYSGLSVALSGCKELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYATV 301

[Close]

BLAST of MELO3C028673.2 vs. TAIR10
Match: AT4G03190.1 (GRR1-like protein 1)

HSP 1 Score: 72.4 bits (176), Expect = 1.3e-13
Identity = 35/63 (55.56%), Postives = 45/63 (71.43%), Query Frame = 0


Query: 2   ADLRSEVFSSLTGAFTSCTELKSLSGFWDVVPAYLPFVYPTCSRLTSLNLSYATIHVTIL 61
           A L+ E FS L+ AF++C +L+SLSG WDV+P YLP +Y  C  LTSLNLSYAT+ +  L
Sbjct: 243 AQLKPEAFSKLSEAFSNCKQLQSLSGLWDVLPEYLPALYSVCPGLTSLNLSYATVRMPDL 302

Query: 62  QSL 65
             L
Sbjct: 303 VEL 305

[Close]

BLAST of MELO3C028673.2 vs. TAIR10
Match: AT5G49980.1 (auxin F-box protein 5)

HSP 1 Score: 52.8 bits (125), Expect = 1.1e-07
Identity = 25/63 (39.68%), Postives = 38/63 (60.32%), Query Frame = 0


Query: 5   RSEVFSSLTGAFTSCTELKSLSGFWDVVPAYLPFVYPTCSRLTSLNLSYATIHVTILQSL 64
           +SE       AF +C  +  LSGF +++P YLP ++P C+ LTSLN SYA I   + + +
Sbjct: 297 QSEQEPDYAAAFRACKSVVCLSGFRELMPEYLPAIFPVCANLTSLNFSYANISPDMFKPI 356

Query: 65  SVN 68
            +N
Sbjct: 357 ILN 359

[Close]

BLAST of MELO3C028673.2 vs. TAIR10
Match: AT1G12820.1 (auxin signaling F-box 3)

HSP 1 Score: 50.4 bits (119), Expect = 5.4e-07
Identity = 26/48 (54.17%), Postives = 29/48 (60.42%), Query Frame = 0


Query: 7   EVFSSLTGAFTSCTELKSLSGFWDVVPAYLPFVYPTCSRLTSLNLSYA 55
           E F+ L  A    T L+SLSGF +V P  LP  YP C  L SLNLSYA
Sbjct: 247 ESFAKLMTAIKKYTSLRSLSGFLEVAPLCLPAFYPICQNLISLNLSYA 294

[Close]

BLAST of MELO3C028673.2 vs. Swiss-Prot
Match: sp|Q570C0|TIR1_ARATH (Protein TRANSPORT INHIBITOR RESPONSE 1 OS=Arabidopsis thaliana OX=3702 GN=TIR1 PE=1 SV=2)

HSP 1 Score: 77.4 bits (189), Expect = 7.4e-14
Identity = 35/55 (63.64%), Postives = 44/55 (80.00%), Query Frame = 0


Query: 2   ADLRSEVFSSLTGAFTSCTELKSLSGFWDVVPAYLPFVYPTCSRLTSLNLSYATI 57
           A++R +V+S L+ A + C EL+ LSGFWD VPAYLP VY  CSRLT+LNLSYAT+
Sbjct: 247 AEVRPDVYSGLSVALSGCKELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYATV 301

[Close]

BLAST of MELO3C028673.2 vs. Swiss-Prot
Match: sp|Q9ZR12|GRH1_ARATH (GRR1-like protein 1 OS=Arabidopsis thaliana OX=3702 GN=GRH1 PE=1 SV=1)

HSP 1 Score: 72.4 bits (176), Expect = 2.4e-12
Identity = 35/63 (55.56%), Postives = 45/63 (71.43%), Query Frame = 0


Query: 2   ADLRSEVFSSLTGAFTSCTELKSLSGFWDVVPAYLPFVYPTCSRLTSLNLSYATIHVTIL 61
           A L+ E FS L+ AF++C +L+SLSG WDV+P YLP +Y  C  LTSLNLSYAT+ +  L
Sbjct: 243 AQLKPEAFSKLSEAFSNCKQLQSLSGLWDVLPEYLPALYSVCPGLTSLNLSYATVRMPDL 302

Query: 62  QSL 65
             L
Sbjct: 303 VEL 305

[Close]

BLAST of MELO3C028673.2 vs. Swiss-Prot
Match: sp|Q0DKP3|TIR1A_ORYSJ (Transport inhibitor response 1-like protein Os05g0150500 OS=Oryza sativa subsp. japonica OX=39947 GN=Os05g0150500 PE=2 SV=2)

HSP 1 Score: 65.5 bits (158), Expect = 2.9e-10
Identity = 31/55 (56.36%), Postives = 36/55 (65.45%), Query Frame = 0


Query: 2   ADLRSEVFSSLTGAFTSCTELKSLSGFWDVVPAYLPFVYPTCSRLTSLNLSYATI 57
           AD  S++F+ L  AF  C  L+ LSG WD VP YLP  Y  C  LTSLNLSYAT+
Sbjct: 258 ADYHSDLFAKLEAAFGGCKSLRRLSGAWDAVPDYLPAFYCVCEGLTSLNLSYATV 312

[Close]

BLAST of MELO3C028673.2 vs. Swiss-Prot
Match: sp|Q7XVM8|TIR1B_ORYSJ (Transport inhibitor response 1-like protein Os04g0395600 OS=Oryza sativa subsp. japonica OX=39947 GN=Os04g0395600 PE=2 SV=1)

HSP 1 Score: 63.2 bits (152), Expect = 1.4e-09
Identity = 28/52 (53.85%), Postives = 35/52 (67.31%), Query Frame = 0


Query: 3   DLRSEVFSSLTGAFTSCTELKSLSGFWDVVPAYLPFVYPTCSRLTSLNLSYA 55
           D ++E +  LT A   C  L+SLSGFWD  P  L F+YP C++LT LNLSYA
Sbjct: 243 DFQTESYFKLTSALEKCKMLRSLSGFWDASPVCLSFIYPLCAQLTGLNLSYA 294

[Close]

BLAST of MELO3C028673.2 vs. Swiss-Prot
Match: sp|Q9LTX2|TIR1L_ARATH (Transport inhibitor response 1-like protein OS=Arabidopsis thaliana OX=3702 GN=At5g49980 PE=2 SV=1)

HSP 1 Score: 52.8 bits (125), Expect = 1.9e-06
Identity = 25/63 (39.68%), Postives = 38/63 (60.32%), Query Frame = 0


Query: 5   RSEVFSSLTGAFTSCTELKSLSGFWDVVPAYLPFVYPTCSRLTSLNLSYATIHVTILQSL 64
           +SE       AF +C  +  LSGF +++P YLP ++P C+ LTSLN SYA I   + + +
Sbjct: 297 QSEQEPDYAAAFRACKSVVCLSGFRELMPEYLPAIFPVCANLTSLNFSYANISPDMFKPI 356

Query: 65  SVN 68
            +N
Sbjct: 357 ILN 359

[Close]

BLAST of MELO3C028673.2 vs. TrEMBL
Match: tr|A0A1S3BRJ6|A0A1S3BRJ6_CUCME (protein TRANSPORT INHIBITOR RESPONSE 1 OS=Cucumis melo OX=3656 GN=LOC103492732 PE=4 SV=1)

HSP 1 Score: 111.3 bits (277), Expect = 9.3e-22
Identity = 57/64 (89.06%), Postives = 57/64 (89.06%), Query Frame = 0


Query: 1   MADLRSEVFSSLTGAFTSCTELKSLSGFWDVVPAYLPFVYPTCSRLTSLNLSYATIHVTI 60
           MADLRSEVFSSLTGAFTSCTELKSLSGFWDVVPAYLP VYPTCSRLTSLNLSYATI    
Sbjct: 245 MADLRSEVFSSLTGAFTSCTELKSLSGFWDVVPAYLPSVYPTCSRLTSLNLSYATIQCDD 304

Query: 61  LQSL 65
           L  L
Sbjct: 305 LTKL 308

[Close]

BLAST of MELO3C028673.2 vs. TrEMBL
Match: tr|M1GCN5|M1GCN5_CUCSA (Transport inhibitor response 1 OS=Cucumis sativus OX=3659 GN=Csa_7G393970 PE=2 SV=1)

HSP 1 Score: 107.8 bits (268), Expect = 1.0e-20
Identity = 55/63 (87.30%), Postives = 56/63 (88.89%), Query Frame = 0


Query: 2   ADLRSEVFSSLTGAFTSCTELKSLSGFWDVVPAYLPFVYPTCSRLTSLNLSYATIHVTIL 61
           ADLRSEVFSSLTGAFTSCTELKSLSGFWDVVPAYLP VYPTCS+LTSLNLSYATI    L
Sbjct: 246 ADLRSEVFSSLTGAFTSCTELKSLSGFWDVVPAYLPSVYPTCSQLTSLNLSYATIQCDDL 305

Query: 62  QSL 65
             L
Sbjct: 306 TKL 308

[Close]

BLAST of MELO3C028673.2 vs. TrEMBL
Match: tr|A0A1R3I5H2|A0A1R3I5H2_COCAP (Uncharacterized protein OS=Corchorus capsularis OX=210143 GN=CCACVL1_14763 PE=4 SV=1)

HSP 1 Score: 93.2 bits (230), Expect = 2.6e-16
Identity = 43/55 (78.18%), Postives = 49/55 (89.09%), Query Frame = 0


Query: 2   ADLRSEVFSSLTGAFTSCTELKSLSGFWDVVPAYLPFVYPTCSRLTSLNLSYATI 57
           A+LR +VFS+L GAF+SC ELKSLSGFWD VPAYLP +YP CS+LTSLNLSYATI
Sbjct: 248 AELRPDVFSNLAGAFSSCKELKSLSGFWDAVPAYLPAIYPVCSKLTSLNLSYATI 302

[Close]

BLAST of MELO3C028673.2 vs. TrEMBL
Match: tr|A0A1R3KHR9|A0A1R3KHR9_9ROSI (Uncharacterized protein OS=Corchorus olitorius OX=93759 GN=COLO4_08020 PE=4 SV=1)

HSP 1 Score: 93.2 bits (230), Expect = 2.6e-16
Identity = 43/55 (78.18%), Postives = 49/55 (89.09%), Query Frame = 0


Query: 2   ADLRSEVFSSLTGAFTSCTELKSLSGFWDVVPAYLPFVYPTCSRLTSLNLSYATI 57
           A+LR +VFS+L GAF+SC ELKSLSGFWD VPAYLP +YP CS+LTSLNLSYATI
Sbjct: 316 AELRPDVFSNLAGAFSSCKELKSLSGFWDAVPAYLPAIYPVCSKLTSLNLSYATI 370

[Close]

BLAST of MELO3C028673.2 vs. TrEMBL
Match: tr|A0A1S6R4L0|A0A1S6R4L0_9ROSI (Transport inhibitor response 1 OS=Hibiscus cannabinus OX=229543 GN=TIR1 PE=2 SV=1)

HSP 1 Score: 92.4 bits (228), Expect = 4.5e-16
Identity = 43/55 (78.18%), Postives = 48/55 (87.27%), Query Frame = 0


Query: 2   ADLRSEVFSSLTGAFTSCTELKSLSGFWDVVPAYLPFVYPTCSRLTSLNLSYATI 57
           ADLR +V+S L GAF+SC ELKSLSGFWDVVP YLP +YP CS+LTSLNLSYATI
Sbjct: 248 ADLRPDVYSDLAGAFSSCKELKSLSGFWDVVPDYLPAIYPVCSKLTSLNLSYATI 302

The following BLAST results are available for this feature:

BLAST of MELO3C028673.2 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008451438.1	1.4e-21	89.06	PREDICTED: protein TRANSPORT INHIBITOR RESPONSE 1 [Cucumis melo]	[more]
NP_001267546.1	1.6e-20	87.30	protein TRANSPORT INHIBITOR RESPONSE 1-like [Cucumis sativus] >AGA63733.1 transp...	[more]
XP_022953789.1	5.9e-20	85.71	protein TRANSPORT INHIBITOR RESPONSE 1-like [Cucurbita moschata]	[more]
XP_023548515.1	5.9e-20	85.71	protein TRANSPORT INHIBITOR RESPONSE 1-like [Cucurbita pepo subsp. pepo]	[more]
XP_022959995.1	2.9e-19	84.13	protein TRANSPORT INHIBITOR RESPONSE 1-like [Cucurbita moschata]	[more]

BLAST of MELO3C028673.2 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G62980.1	4.1e-15	63.64	F-box/RNI-like superfamily protein	[more]
AT4G03190.1	1.3e-13	55.56	GRR1-like protein 1	[more]
AT5G49980.1	1.1e-07	39.68	auxin F-box protein 5	[more]
AT1G12820.1	5.4e-07	54.17	auxin signaling F-box 3	[more]

BLAST of MELO3C028673.2 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q570C0\|TIR1_ARATH	7.4e-14	63.64	Protein TRANSPORT INHIBITOR RESPONSE 1 OS=Arabidopsis thaliana OX=3702 GN=TIR1 P...	[more]
sp\|Q9ZR12\|GRH1_ARATH	2.4e-12	55.56	GRR1-like protein 1 OS=Arabidopsis thaliana OX=3702 GN=GRH1 PE=1 SV=1	[more]
sp\|Q0DKP3\|TIR1A_ORYSJ	2.9e-10	56.36	Transport inhibitor response 1-like protein Os05g0150500 OS=Oryza sativa subsp. ...	[more]
sp\|Q7XVM8\|TIR1B_ORYSJ	1.4e-09	53.85	Transport inhibitor response 1-like protein Os04g0395600 OS=Oryza sativa subsp. ...	[more]
sp\|Q9LTX2\|TIR1L_ARATH	1.9e-06	39.68	Transport inhibitor response 1-like protein OS=Arabidopsis thaliana OX=3702 GN=A...	[more]

BLAST of MELO3C028673.2 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3BRJ6\|A0A1S3BRJ6_CUCME	9.3e-22	89.06	protein TRANSPORT INHIBITOR RESPONSE 1 OS=Cucumis melo OX=3656 GN=LOC103492732 P...	[more]
tr\|M1GCN5\|M1GCN5_CUCSA	1.0e-20	87.30	Transport inhibitor response 1 OS=Cucumis sativus OX=3659 GN=Csa_7G393970 PE=2 S...	[more]
tr\|A0A1R3I5H2\|A0A1R3I5H2_COCAP	2.6e-16	78.18	Uncharacterized protein OS=Corchorus capsularis OX=210143 GN=CCACVL1_14763 PE=4 ...	[more]
tr\|A0A1R3KHR9\|A0A1R3KHR9_9ROSI	2.6e-16	78.18	Uncharacterized protein OS=Corchorus olitorius OX=93759 GN=COLO4_08020 PE=4 SV=1	[more]
tr\|A0A1S6R4L0\|A0A1S6R4L0_9ROSI	4.5e-16	78.18	Transport inhibitor response 1 OS=Hibiscus cannabinus OX=229543 GN=TIR1 PE=2 SV=...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR032675	LRR_dom_sf

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C028673.2.1	MELO3C028673.2.1	mRNA

InterPro

Analysis Name: InterPro Annotations of melon v3.6.1
Date Performed: 2018-09-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR032675	Leucine-rich repeat domain superfamily	GENE3D	G3DSA:3.80.10.10		coord: 1..68 e-value: 4.9E-12 score: 46.9
None	No IPR available	PANTHER	PTHR43944	FAMILY NOT NAMED	coord: 2..64
None	No IPR available	PANTHER	PTHR43944:SF7	GRR1-LIKE PROTEIN 1-RELATED	coord: 2..64
None	No IPR available	PROSITE	PS51257	PROKAR_LIPOPROTEIN	coord: 1..19 score: 5.0
None	No IPR available	SUPERFAMILY	SSF52047	RNI-like	coord: 9..65

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
MELO3C028673.2	Cucumber (Gy14) v2	cgybmedB457
MELO3C028673.2	Cucumber (Gy14) v1	cgymedB462
MELO3C028673.2	Cucurbita maxima (Rimu)	cmamedB019
MELO3C028673.2	Cucurbita maxima (Rimu)	cmamedB455
MELO3C028673.2	Cucurbita moschata (Rifu)	cmomedB007
MELO3C028673.2	Cucurbita moschata (Rifu)	cmomedB443
MELO3C028673.2	Cucurbita pepo (Zucchini)	cpemedB595
MELO3C028673.2	Cucurbita pepo (Zucchini)	cpemedB847
MELO3C028673.2	Cucumber (Chinese Long) v2	cumedB517
MELO3C028673.2	Bottle gourd (USVL1VR-Ls)	lsimedB196
MELO3C028673.2	Watermelon (Charleston Gray)	medwcgB172
MELO3C028673.2	Watermelon (97103) v1	medwmB197
MELO3C028673.2	Silver-seed gourd	carmedB0880
MELO3C028673.2	Silver-seed gourd	carmedB0897
MELO3C028673.2	Cucumber (Chinese Long) v3	cucmedB528
MELO3C028673.2	Watermelon (97103) v2	medwmbB211
MELO3C028673.2	Wax gourd	medwgoB256