MELO3C028606.2 (gene) Melon (DHL92) v3.6.1

Overview
NameMELO3C028606.2
Typegene
OrganismCucumis melo (Melon (DHL92) v3.6.1)
DescriptionLINE-1 reverse transcriptase isogeny
Locationchr01 : 1549186 .. 1552305 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAGCAATGCATTTGTATCTTTCAAAAATACGTAATTAACGCACTGTCAATTGTATAACCAAATTCTTGAAGCAGTAACCTTCTGGAAAAAGTTGCATGTACCTCACATGATTTGCAATTAGCATTGGATCAAGGTCACACCGAACATCTTTGAGGTCTGGGGACCACTTTGCACTCAATACTCCTGTAACAATAACGTCATCTGCCCCAATAATCAAACACCCCATCCCCATTGAGAAGGAAACAGTAAGGAACCAATAACCTCATCTGCTATAAACAAACAAATATAAATATATATGTATATATATGTGTGTATATATGTATATATATGTGTATATATATGTATATATATGTGTATATATATGTATATATATGTGTATATATGTGTATATATATGTATTATCTGTATATATATGTATATATCTGAATATATATATATATATGTACATATATATATATGTACATATATATATACACACATATATATATAGATGCATATACATATTAAAAAGAAGTGACATCCATAAGATTCTTGAAAAGAGATAATCTACATTTATATAAGTAGCAAACACAGGGCCAAAGTAAGATTTTGAATAAGCTCCTATTGCTGACTATTTGTTTTTTTTTTTTTTTTCTTATCCTTTTGTTTTTTGTTGATGCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTTTTGTTCTCCTTCGTAACAAAGGAAATATTTTCTTTGATTTCATGAAAGGAAACACACGTTGAGAGGTAAAAACTCCCAAGAGGGAAGTCATTCATTCATTCTAAAGTGCCTAGCAAAGATTTATGTGCTATCAAAAGTGTAGCTGTATTTTTTTCTTTTCATTTTTTTTTAAGAAAAAATAAGAAGAACGGACATGTATTGCATATAACAAAAGGCAAAACAACCTAGGGGTCGGGGTAGAGGAAACCCTCTCACAGAAAGCTAACTGCATTTTTCTATAAGATACAATTTCATCGACTGAATGAAATATGCAAAGAGATACAAAAGGGGCCCATATGCAGGGTGTACAAAAGATTTCTCCAATTTGCAACAAGGAAATTTAAACTATGAACATGAAGAGGCGGTAAAATTTTACACCAAAATAAAACATGGAAAGCAGCTAACTCAATGACATATCCAAAGGATCTTTCTTTGTCTTGGAATTTCTCTCTTCCCAAATCTTCCATAAAACAACCTTGATCAAGCTGGACCATAACTGTGCCTTTGTAGCTCCGATTAACTTCTTACATTATCGACCCCAACAGTATTTAGTGAAAAAGATAAGCCAGGTTCTTCTCCTTCCCATTGAAAGTTTTATCATTCCTAACTCTGGCTGCCATGAGTATTTAGTGAAGAAACAAATCTCCAAGTCCAAATGAACTTGAGAGTGAGTTCTTAAGTAGTTGGAATTTAACAAAGGAAGATTGCATGAGATGATCAAAAGCTTCCATAGAAATGGCTGCCTAAGCACTTGCATCGAGCAGAACTTTATTTGAAACATTATCTTCCAATGAATCTTACTACTTCAGGATATTACGTCTTTTCCTAAAGGATCGATAGCGAAACATTGAAATTTTGAGTTGAACTCTTGGGCTATAAATTTTCGTCGGTTATTAAAGGAAGAGATAGCAGAATTTCAGAAGATTGGTAAAATTTCAGCAAGGAGAATTTCTGAGGCACCTGACAAAAGAATTTGGTCCCTAGAGAGTAATGGAAGATTTTTGGTAAAATCTCTCACAACTCATCTTTCCCCATCTTCACCTTTGGATAATGTGTTGCACATGGCTTTATGGAAGACTAATAGTCCAAGAAGAGCTAACGTTCTTGTTTGGGTTTTGTTGTTTGGTCATTTGAACATGTCTTCAGTATTGCAGCAAAAATTGCCAGCTGGTTGCCTTTTCCCTTCAATCTGCCCATTCTGTCTTCAGCATGGAGAAGATCCGTCTCATCTGTTTTTCCTTTGTCCATACTCAGCTAAGTGCTGGGAAAAATTGCTCTCCGTTTTTAATATGTCATGGGTTTCTGATAAGGACTACAGTGAAACGGTTAGACAGCTTCTAGGAGGGCCTTATTTCAATAAGACCTCACAGTTATTATGGTGGAATGTGGTCAAAGCATTATTGGCAGATTTCTGATTTGAAAGAAACCAAAGGACTTTTCATGACAAATCTCTTGGTCAGTTAGATCATTATGAAGTTGCTCATAGGCTTCATCGTGGTGCATTCTTGCTAAGGAAATTGATATGTACAGCATCTCAGAGCTAAATCTATATCGGAGTGCCTTCATTCCAGCAGCCTAACTAGGGATTGGTGCTAAGTGGTATCATATCTCATTTAATTGTGTCATTAATCAGATTATATAGTTCTGTGTATTAGGGATTGCGTCACTTGTTTTTCATGAATTATTATTTATGATGTAAAGGTTGTTTCTTGGACTCAGTAGTTAGGTATTTCCTAGTTTCTATGGATATGATGAGGACGCTAATAAGGTGTCAACCTAGTTTAGATTTCAGGATGCGCCTACTGATCCTTAG

mRNA sequence

ATGAGCAATGCATTTGTATCTTTCAAAAATACAAAAAATAAGAAGAACGGACATGAAGAGATAGCAGAATTTCAGAAGATTGGTAAAATTTCAGCAAGGAGAATTTCTGAGGCACCTGACAAAAGAATTTGGTCCCTAGAGAGTAATGGAAGATTTTTGGTAAAATCTCTCACAACTCATCTTTCCCCATCTTCACCTTTGGATAATGTGTTGCACATGGCTTTATGGAAGACTAATAGTCCAAGAAGAGCTAACGTTCTTGTTTGGGTTTTGTTGTTTGGTCATTTGAACATGTCTTCAGTATTGCAGCAAAAATTGCCAGCTGGTTGCCTTTTCCCTTCAATCTGCCCATTCTGTCTTCAGCATGGAGAAGATCCGTCTCATCTGTTTTTCCTTTGTCCATACTCAGCTAAGTGCTGGGAAAAATTGCTCTCCGTTTTTAATATGTCATGGGTTTCTGATAAGGACTACAGTGAAACGGATGCGCCTACTGATCCTTAG

Coding sequence (CDS)

ATGAGCAATGCATTTGTATCTTTCAAAAATACAAAAAATAAGAAGAACGGACATGAAGAGATAGCAGAATTTCAGAAGATTGGTAAAATTTCAGCAAGGAGAATTTCTGAGGCACCTGACAAAAGAATTTGGTCCCTAGAGAGTAATGGAAGATTTTTGGTAAAATCTCTCACAACTCATCTTTCCCCATCTTCACCTTTGGATAATGTGTTGCACATGGCTTTATGGAAGACTAATAGTCCAAGAAGAGCTAACGTTCTTGTTTGGGTTTTGTTGTTTGGTCATTTGAACATGTCTTCAGTATTGCAGCAAAAATTGCCAGCTGGTTGCCTTTTCCCTTCAATCTGCCCATTCTGTCTTCAGCATGGAGAAGATCCGTCTCATCTGTTTTTCCTTTGTCCATACTCAGCTAAGTGCTGGGAAAAATTGCTCTCCGTTTTTAATATGTCATGGGTTTCTGATAAGGACTACAGTGAAACGGATGCGCCTACTGATCCTTAG

Protein sequence

MSNAFVSFKNTKNKKNGHEEIAEFQKIGKISARRISEAPDKRIWSLESNGRFLVKSLTTHLSPSSPLDNVLHMALWKTNSPRRANVLVWVLLFGHLNMSSVLQQKLPAGCLFPSICPFCLQHGEDPSHLFFLCPYSAKCWEKLLSVFNMSWVSDKDYSETDAPTDP
Homology
[Close]
BLAST of MELO3C028606.2 vs. NCBI nr
Match: XP_022153214.1 (uncharacterized protein LOC111020765 [Momordica charantia])

HSP 1 Score: 96.7 bits (239), Expect = 8.1e-17
Identity = 40/81 (49.38%), Postives = 51/81 (62.96%), Query Frame = 0 

Query: 74  ALWKTNSPRRANVLVWVLLFGHLNMSSVLQQKLPAGCLFPSICPFCLQHGEDPSHLFFLC 133
           ALWKT SPRR NV  W+L  G LN + ++Q+K P+  L PS C  C + GED  HLFF C
Sbjct: 31  ALWKTKSPRRVNVFCWILFQGKLNTADIIQKKSPSDALLPSFCCLCTKSGEDHDHLFFHC 90

Query: 134 PYSAKCWEKLLSVFNMSWVSD 155
            +++KCW  L   FN+ W  D
Sbjct: 91  YFASKCWNLLFHQFNVDWCFD 111

[Close]
BLAST of MELO3C028606.2 vs. NCBI nr
Match: CAN66166.1 (hypothetical protein VITISV_000142 [Vitis vinifera])

HSP 1 Score: 87.4 bits (215), Expect = 4.9e-14
Identity = 44/122 (36.07%), Postives = 61/122 (50.00%), Query Frame = 0 

Query: 39  PDKRIWSLESNGRFLVKSLTTHLSPSSPLDNVLHMA-LWKTNSPRRANVLVWVLLFGHLN 98
           PDKR WS+  +G F VKS    LS  S    V     +W +  P +    VW++    LN
Sbjct: 408 PDKRSWSISPSGLFTVKSFFLALSQHSESPPVFPTKFVWNSQVPFKVKSFVWLVAHKKLN 467

Query: 99  MSSVLQQKLPAGCLFPSICPFCLQHGEDPSHLFFLCPYSAKCWEKLLSVFNMSWVSDKDY 158
            + +LQ + P   L P+IC  C++HGE   HLF  C  +   W +L  +  M WVS +  
Sbjct: 468 TNDLLQLRRPHKALSPNICKLCMKHGETVDHLFLHCSLTKGLWNRLFQLAKMDWVSPRSI 527

Query: 159 SE 160
           SE
Sbjct: 528 SE 529

[Close]
BLAST of MELO3C028606.2 vs. NCBI nr
Match: CAN61757.1 (hypothetical protein VITISV_030741 [Vitis vinifera])

HSP 1 Score: 86.3 bits (212), Expect = 1.1e-13
Identity = 43/122 (35.25%), Postives = 61/122 (50.00%), Query Frame = 0 

Query: 39   PDKRIWSLESNGRFLVKSLTTHLSPSSPLDNVLHMA-LWKTNSPRRANVLVWVLLFGHLN 98
            PDKR WS+  +G F VKS    LS  S    V     +W +  P +    VW++    LN
Sbjct: 1101 PDKRSWSISPSGLFTVKSFFLALSQHSESPPVFPTKFVWNSQVPFKVKSFVWLVAHKKLN 1160

Query: 99   MSSVLQQKLPAGCLFPSICPFCLQHGEDPSHLFFLCPYSAKCWEKLLSVFNMSWVSDKDY 158
             + +LQ + P   L P+IC  C++HGE   HLF  C  +   W +L  +  M WVS +  
Sbjct: 1161 TNDLLQLRRPHKALSPNICKLCMKHGETVDHLFLHCSLTKGLWHRLFQLAKMDWVSPRSI 1220

Query: 159  SE 160
            S+
Sbjct: 1221 SD 1222

[Close]
BLAST of MELO3C028606.2 vs. NCBI nr
Match: CAN63585.1 (hypothetical protein VITISV_026806 [Vitis vinifera])

HSP 1 Score: 85.9 bits (211), Expect = 1.4e-13
Identity = 43/122 (35.25%), Postives = 61/122 (50.00%), Query Frame = 0 

Query: 39  PDKRIWSLESNGRFLVKSLTTHLSPSSPLDNVLHMA-LWKTNSPRRANVLVWVLLFGHLN 98
           PDKR WS+  +G F VKS    LS  S    V     +W +  P +    VW++    LN
Sbjct: 479 PDKRSWSISPSGLFTVKSFFLALSQYSESPPVFPTKFVWNSQVPFKVKSFVWLVAHKKLN 538

Query: 99  MSSVLQQKLPAGCLFPSICPFCLQHGEDPSHLFFLCPYSAKCWEKLLSVFNMSWVSDKDY 158
            + +LQ + P   L P+IC  C++HGE   HLF  C  +   W +L  +  M WVS +  
Sbjct: 539 TNDLLQLRRPHKALSPNICKLCMKHGETVDHLFLHCSLTKGLWHRLFQLAKMDWVSPRSI 598

Query: 159 SE 160
           S+
Sbjct: 599 SD 600

[Close]
BLAST of MELO3C028606.2 vs. NCBI nr
Match: CAN76904.1 (hypothetical protein VITISV_016347 [Vitis vinifera])

HSP 1 Score: 84.7 bits (208), Expect = 3.2e-13
Identity = 42/118 (35.59%), Postives = 60/118 (50.85%), Query Frame = 0 

Query: 39  PDKRIWSLESNGRFLVKSLTTHLSPSSPLDNVLHMA-LWKTNSPRRANVLVWVLLFGHLN 98
           PDKR WS+  +G F VKS    LS  S    V  +  +W +  P +    VW++    LN
Sbjct: 749 PDKRSWSISPSGLFTVKSFFLALSQYSESPPVFPIEFVWNSQVPFKVKSFVWLVAHKKLN 808

Query: 99  MSSVLQQKLPAGCLFPSICPFCLQHGEDPSHLFFLCPYSAKCWEKLLSVFNMSWVSDK 156
            + +LQ + P   L P+IC  C++HGE   HLF  C  +   W +L  +  M WVS +
Sbjct: 809 TNDLLQLRRPYKALSPNICKLCMKHGETVDHLFLHCSLTKGLWHRLFQLAKMDWVSPR 866

[Close]
BLAST of MELO3C028606.2 vs. TrEMBL
Match: tr|A5BZ69|A5BZ69_VITVI (Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VITISV_000142 PE=4 SV=1)

HSP 1 Score: 87.4 bits (215), Expect = 3.2e-14
Identity = 44/122 (36.07%), Postives = 61/122 (50.00%), Query Frame = 0 

Query: 39  PDKRIWSLESNGRFLVKSLTTHLSPSSPLDNVLHMA-LWKTNSPRRANVLVWVLLFGHLN 98
           PDKR WS+  +G F VKS    LS  S    V     +W +  P +    VW++    LN
Sbjct: 408 PDKRSWSISPSGLFTVKSFFLALSQHSESPPVFPTKFVWNSQVPFKVKSFVWLVAHKKLN 467

Query: 99  MSSVLQQKLPAGCLFPSICPFCLQHGEDPSHLFFLCPYSAKCWEKLLSVFNMSWVSDKDY 158
            + +LQ + P   L P+IC  C++HGE   HLF  C  +   W +L  +  M WVS +  
Sbjct: 468 TNDLLQLRRPHKALSPNICKLCMKHGETVDHLFLHCSLTKGLWNRLFQLAKMDWVSPRSI 527

Query: 159 SE 160
           SE
Sbjct: 528 SE 529

[Close]
BLAST of MELO3C028606.2 vs. TrEMBL
Match: tr|A5BTG1|A5BTG1_VITVI (Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VITISV_030741 PE=4 SV=1)

HSP 1 Score: 86.3 bits (212), Expect = 7.2e-14
Identity = 43/122 (35.25%), Postives = 61/122 (50.00%), Query Frame = 0 

Query: 39   PDKRIWSLESNGRFLVKSLTTHLSPSSPLDNVLHMA-LWKTNSPRRANVLVWVLLFGHLN 98
            PDKR WS+  +G F VKS    LS  S    V     +W +  P +    VW++    LN
Sbjct: 1101 PDKRSWSISPSGLFTVKSFFLALSQHSESPPVFPTKFVWNSQVPFKVKSFVWLVAHKKLN 1160

Query: 99   MSSVLQQKLPAGCLFPSICPFCLQHGEDPSHLFFLCPYSAKCWEKLLSVFNMSWVSDKDY 158
             + +LQ + P   L P+IC  C++HGE   HLF  C  +   W +L  +  M WVS +  
Sbjct: 1161 TNDLLQLRRPHKALSPNICKLCMKHGETVDHLFLHCSLTKGLWHRLFQLAKMDWVSPRSI 1220

Query: 159  SE 160
            S+
Sbjct: 1221 SD 1222

[Close]
BLAST of MELO3C028606.2 vs. TrEMBL
Match: tr|A5BKH7|A5BKH7_VITVI (Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VITISV_026806 PE=4 SV=1)

HSP 1 Score: 85.9 bits (211), Expect = 9.4e-14
Identity = 43/122 (35.25%), Postives = 61/122 (50.00%), Query Frame = 0 

Query: 39  PDKRIWSLESNGRFLVKSLTTHLSPSSPLDNVLHMA-LWKTNSPRRANVLVWVLLFGHLN 98
           PDKR WS+  +G F VKS    LS  S    V     +W +  P +    VW++    LN
Sbjct: 479 PDKRSWSISPSGLFTVKSFFLALSQYSESPPVFPTKFVWNSQVPFKVKSFVWLVAHKKLN 538

Query: 99  MSSVLQQKLPAGCLFPSICPFCLQHGEDPSHLFFLCPYSAKCWEKLLSVFNMSWVSDKDY 158
            + +LQ + P   L P+IC  C++HGE   HLF  C  +   W +L  +  M WVS +  
Sbjct: 539 TNDLLQLRRPHKALSPNICKLCMKHGETVDHLFLHCSLTKGLWHRLFQLAKMDWVSPRSI 598

Query: 159 SE 160
           S+
Sbjct: 599 SD 600

[Close]
BLAST of MELO3C028606.2 vs. TrEMBL
Match: tr|A5BHW7|A5BHW7_VITVI (Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VITISV_016347 PE=4 SV=1)

HSP 1 Score: 84.7 bits (208), Expect = 2.1e-13
Identity = 42/118 (35.59%), Postives = 60/118 (50.85%), Query Frame = 0 

Query: 39  PDKRIWSLESNGRFLVKSLTTHLSPSSPLDNVLHMA-LWKTNSPRRANVLVWVLLFGHLN 98
           PDKR WS+  +G F VKS    LS  S    V  +  +W +  P +    VW++    LN
Sbjct: 749 PDKRSWSISPSGLFTVKSFFLALSQYSESPPVFPIEFVWNSQVPFKVKSFVWLVAHKKLN 808

Query: 99  MSSVLQQKLPAGCLFPSICPFCLQHGEDPSHLFFLCPYSAKCWEKLLSVFNMSWVSDK 156
            + +LQ + P   L P+IC  C++HGE   HLF  C  +   W +L  +  M WVS +
Sbjct: 809 TNDLLQLRRPYKALSPNICKLCMKHGETVDHLFLHCSLTKGLWHRLFQLAKMDWVSPR 866

[Close]
BLAST of MELO3C028606.2 vs. TrEMBL
Match: tr|M5X4S0|M5X4S0_PRUPE (Uncharacterized protein (Fragment) OS=Prunus persica OX=3760 GN=PRUPE_ppa021750mg PE=4 SV=1)

HSP 1 Score: 84.0 bits (206), Expect = 3.6e-13
Identity = 39/125 (31.20%), Postives = 60/125 (48.00%), Query Frame = 0 

Query: 31  SARRISEAPDKRIWSLESNGRFLVKSLTTHLSPSSPLDNVLHMALWKTNSPRRANVLVWV 90
           + R     PD+R W +E  G F  KS  + L  ++        ++WK  +P +    VW+
Sbjct: 742 NVRLYGSRPDRRSWEVEEQGSFSCKSFRSFLLSTTRDVFPPFSSIWKAKTPPKIQFFVWL 801

Query: 91  LLFGHLNMSSVLQQKLPAGCLFPSICPFCLQHGEDPSHLFFLCPYSAKCWEKLLSVFNMS 150
              G +N    +Q++ P  CL PS C  C ++ E+  HLF  C YS + W K+L    + 
Sbjct: 802 AANGRINTCDCIQRRQPKMCLSPSWCVLCKENAENIDHLFLHCSYSLRLWWKMLGALGVE 861

Query: 151 WVSDK 156
           WV  K
Sbjct: 862 WVIPK 866

The following BLAST results are available for this feature:
BLAST of MELO3C028606.2 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022153214.18.1e-1749.38uncharacterized protein LOC111020765 [Momordica charantia][more]
CAN66166.14.9e-1436.07hypothetical protein VITISV_000142 [Vitis vinifera][more]
CAN61757.11.1e-1335.25hypothetical protein VITISV_030741 [Vitis vinifera][more]
CAN63585.11.4e-1335.25hypothetical protein VITISV_026806 [Vitis vinifera][more]
CAN76904.13.2e-1335.59hypothetical protein VITISV_016347 [Vitis vinifera][more]
BLAST of MELO3C028606.2 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of MELO3C028606.2 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of MELO3C028606.2 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A5BZ69|A5BZ69_VITVI3.2e-1436.07Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VITISV_000142 PE=4 SV=1[more]
tr|A5BTG1|A5BTG1_VITVI7.2e-1435.25Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VITISV_030741 PE=4 SV=1[more]
tr|A5BKH7|A5BKH7_VITVI9.4e-1435.25Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VITISV_026806 PE=4 SV=1[more]
tr|A5BHW7|A5BHW7_VITVI2.1e-1335.59Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VITISV_016347 PE=4 SV=1[more]
tr|M5X4S0|M5X4S0_PRUPE3.6e-1331.20Uncharacterized protein (Fragment) OS=Prunus persica OX=3760 GN=PRUPE_ppa021750m... [more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR026960RVT-Znf
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006278 RNA-dependent DNA biosynthetic process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0003964 RNA-directed DNA polymerase activity
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C028606.2.1MELO3C028606.2.1mRNA


InterPro
Analysis Name: InterPro Annotations of melon v3.6.1
Date Performed: 2018-09-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR026960Reverse transcriptase zinc-binding domainPFAMPF13966zf-RVTcoord: 52..140
e-value: 9.0E-12
score: 45.4

Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
MELO3C028606.2Cucumber (Chinese Long) v3cucmedB536
MELO3C028606.2Watermelon (97103) v2medwmbB209
MELO3C028606.2Wax gourdmedwgoB220
MELO3C028606.2Cucumber (Gy14) v2cgybmedB465
MELO3C028606.2Cucumber (Gy14) v1cgymedB377
MELO3C028606.2Cucurbita maxima (Rimu)cmamedB106
MELO3C028606.2Cucurbita maxima (Rimu)cmamedB535
MELO3C028606.2Cucurbita moschata (Rifu)cmomedB091
MELO3C028606.2Cucurbita moschata (Rifu)cmomedB523
MELO3C028606.2Cucurbita pepo (Zucchini)cpemedB715
MELO3C028606.2Wild cucumber (PI 183967)cpimedB523
MELO3C028606.2Cucumber (Chinese Long) v2cumedB509
MELO3C028606.2Bottle gourd (USVL1VR-Ls)lsimedB260
MELO3C028606.2Watermelon (Charleston Gray)medwcgB171
MELO3C028606.2Watermelon (97103) v1medwmB203
MELO3C028606.2Silver-seed gourdcarmedB0300