MELO3C028601.2 (gene) Melon (DHL92) v3.6.1

NameMELO3C028601.2
Typegene
OrganismCucumis melo (Melon (DHL92) v3.6.1)
Descriptionpolygalacturonase-like
Locationchr01 : 4164002 .. 4164174 (-)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexonthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
GCTTTGGCAAATGCATGGAAGGATGCATGTGGATCGACCAATCCAAGTAAATTGTTGATTCCAATAGGAGTTTACCAACTAAACCAATCCATTCTCCATGGTCCTTGCAAAAGTACTATTGAGGTTCAGATGGAAGGAACATTACAAGCTCATCCCGATCCAATAGGAGATGG

mRNA sequence

GCTTTGGCAAATGCATGGAAGGATGCATGTGGATCGACCAATCCAAGTAAATTGTTGATTCCAATAGGAGTTTACCAACTAAACCAATCCATTCTCCATGGTCCTTGCAAAAGTACTATTGAGGTTCAGATGGAAGGAACATTACAAGCTCATCCCGATCCAATAGGAGATGG

Coding sequence (CDS)

GCTTTGGCAAATGCATGGAAGGATGCATGTGGATCGACCAATCCAAGTAAATTGTTGATTCCAATAGGAGTTTACCAACTAAACCAATCCATTCTCCATGGTCCTTGCAAAAGTACTATTGAGGTTCAGATGGAAGGAACATTACAAGCTCATCCCGATCCAATAGGAGAT

Protein sequence

ALANAWKDACGSTNPSKLLIPIGVYQLNQSILHGPCKSTIEVQMEGTLQAHPDPIGD
BLAST of MELO3C028601.2 vs. NCBI nr
Match: XP_011658677.1 (PREDICTED: exopolygalacturonase-like [Cucumis sativus])

HSP 1 Score: 109.8 bits (273), Expect = 3.2e-21
Identity = 50/57 (87.72%), Postives = 52/57 (91.23%), Query Frame = 0

Query: 1   ALANAWKDACGSTNPSKLLIPIGVYQLNQSILHGPCKSTIEVQMEGTLQAHPDPIGD 58
           A ANAWKDAC ST  SKLLIP+GVY LNQSILHGPCKSTIEV+MEGTLQAHPDPIGD
Sbjct: 103 AFANAWKDACASTYSSKLLIPMGVYHLNQSILHGPCKSTIEVRMEGTLQAHPDPIGD 159

BLAST of MELO3C028601.2 vs. NCBI nr
Match: XP_008455507.2 (PREDICTED: exopolygalacturonase-like [Cucumis melo])

HSP 1 Score: 106.7 bits (265), Expect = 2.7e-20
Identity = 48/55 (87.27%), Postives = 51/55 (92.73%), Query Frame = 0

Query: 2   LANAWKDACGSTNPSKLLIPIGVYQLNQSILHGPCKSTIEVQMEGTLQAHPDPIG 57
           LANAWKDAC STNPS+LLIP GVYQLNQS+L GPC STIEV+MEGTLQAHPDPIG
Sbjct: 166 LANAWKDACASTNPSQLLIPTGVYQLNQSLLIGPCNSTIEVRMEGTLQAHPDPIG 220

BLAST of MELO3C028601.2 vs. NCBI nr
Match: XP_011658673.1 (PREDICTED: exopolygalacturonase-like [Cucumis sativus])

HSP 1 Score: 102.8 bits (255), Expect = 3.9e-19
Identity = 47/57 (82.46%), Postives = 52/57 (91.23%), Query Frame = 0

Query: 1   ALANAWKDACGSTNPSKLLIPIGVYQLNQSILHGPCKSTIEVQMEGTLQAHPDPIGD 58
           ALANAWKDAC STN S LLIPIGVYQLNQSIL GPCKSTI+ ++EGTLQAHP+PIG+
Sbjct: 45  ALANAWKDACASTNSSILLIPIGVYQLNQSILDGPCKSTIDFRLEGTLQAHPNPIGN 101

BLAST of MELO3C028601.2 vs. NCBI nr
Match: XP_004140444.1 (PREDICTED: exopolygalacturonase-like [Cucumis sativus])

HSP 1 Score: 85.9 bits (211), Expect = 4.9e-14
Identity = 39/57 (68.42%), Postives = 47/57 (82.46%), Query Frame = 0

Query: 1  ALANAWKDACGSTNPSKLLIPIGVYQLNQSILHGPCKSTIEVQMEGTLQAHPDPIGD 58
          AL NAWK AC ST+ SK+LIP G+Y L+QS L GPCKS+IE+Q++GTLQA PDP GD
Sbjct: 43 ALLNAWKGACASTSRSKVLIPKGIYLLSQSNLKGPCKSSIEIQVQGTLQAPPDPKGD 99

BLAST of MELO3C028601.2 vs. NCBI nr
Match: XP_016903689.1 (PREDICTED: exopolygalacturonase-like, partial [Cucumis melo])

HSP 1 Score: 85.1 bits (209), Expect = 8.3e-14
Identity = 40/57 (70.18%), Postives = 46/57 (80.70%), Query Frame = 0

Query: 1  ALANAWKDACGSTNPSKLLIPIGVYQLNQSILHGPCKSTIEVQMEGTLQAHPDPIGD 58
          ALA+AWK+AC ST PSK+LIP G Y L+QS L GPCKS IE+Q+EGTLQA  DP GD
Sbjct: 1  ALASAWKEACASTTPSKVLIPKGSYGLSQSNLKGPCKSAIELQIEGTLQAPADPKGD 57

BLAST of MELO3C028601.2 vs. TAIR10
Match: AT3G07820.1 (Pectin lyase-like superfamily protein)

HSP 1 Score: 55.1 bits (131), Expect = 1.7e-08
Identity = 24/55 (43.64%), Postives = 39/55 (70.91%), Query Frame = 0

Query: 1  ALANAWKDACGSTNPSKLLIPIGVYQLNQSILHGPCKSTIEVQMEGTLQAHPDPI 56
          AL  A+  AC S++PSK++IP G ++L +  + GPCK+ IEV ++GT++A  + I
Sbjct: 38 ALLKAFTSACQSSSPSKVVIPKGEFKLGEIEMRGPCKAPIEVTLQGTVKADGNAI 92

BLAST of MELO3C028601.2 vs. TAIR10
Match: AT1G17150.1 (Pectin lyase-like superfamily protein)

HSP 1 Score: 54.7 bits (130), Expect = 2.2e-08
Identity = 24/53 (45.28%), Postives = 30/53 (56.60%), Query Frame = 0

Query: 1   ALANAWKDACGSTNPSKLLIPIGVYQLNQSILHGPCKSTIEVQMEGTLQAHPD 54
           A  NAWKDAC    PSK+ IP+G + L      GPC   I   ++GTL A P+
Sbjct: 51  AFTNAWKDACRWNGPSKMYIPLGTFYLGGVTFVGPCDGKISFVIDGTLLAPPN 103

BLAST of MELO3C028601.2 vs. TAIR10
Match: AT3G07830.1 (Pectin lyase-like superfamily protein)

HSP 1 Score: 50.1 bits (118), Expect = 5.4e-07
Identity = 22/55 (40.00%), Postives = 35/55 (63.64%), Query Frame = 0

Query: 1  ALANAWKDACGSTNPSKLLIPIGVYQLNQSILHGPCKSTIEVQMEGTLQAHPDPI 56
          AL  A+  AC S  P K++IP G ++L + ++ GPCKS +E+ + GT+ A  + I
Sbjct: 39 ALLRAFTTACQSPTPRKVVIPKGQFKLGEIMMSGPCKSPVEITLLGTVLADGNSI 93

BLAST of MELO3C028601.2 vs. TAIR10
Match: AT1G78400.1 (Pectin lyase-like superfamily protein)

HSP 1 Score: 49.3 bits (116), Expect = 9.2e-07
Identity = 23/54 (42.59%), Postives = 28/54 (51.85%), Query Frame = 0

Query: 1   ALANAWKDACGSTNPSKLLIPIGVYQLNQSILHGPCKSTIEVQMEGTLQAHPDP 55
           A   AWKDAC      ++ IP G + L      GPCKS I   ++GTL A  DP
Sbjct: 53  AFTKAWKDACQWKGLPRVYIPFGTFYLGAVAFTGPCKSRISFIIKGTLLAPKDP 106

BLAST of MELO3C028601.2 vs. TAIR10
Match: AT1G05650.1 (Pectin lyase-like superfamily protein)

HSP 1 Score: 47.8 bits (112), Expect = 2.7e-06
Identity = 21/53 (39.62%), Postives = 29/53 (54.72%), Query Frame = 0

Query: 1  ALANAWKDACGSTNPSKLLIPIGVYQLNQSILHGPCKSTIEVQMEGTLQAHPD 54
          A   AW+ ACGS   + +++P G + L      GPCKS I  Q+ GT+ A  D
Sbjct: 46 AFLKAWQGACGSAASATVVVPTGTFLLKVITFGGPCKSKITFQVTGTVVAPED 98

BLAST of MELO3C028601.2 vs. Swiss-Prot
Match: sp|Q40312|PGLR_MEDSA (Polygalacturonase OS=Medicago sativa OX=3879 PE=2 SV=1)

HSP 1 Score: 70.9 bits (172), Expect = 5.3e-12
Identity = 30/54 (55.56%), Postives = 40/54 (74.07%), Query Frame = 0

Query: 1  ALANAWKDACGSTNPSKLLIPIGVYQLNQSILHGPCKSTIEVQMEGTLQAHPDP 55
          AL +AW +AC ST  +K++IP G YQLN   L GPCK+ IE+Q++GT+QA  DP
Sbjct: 41 ALTSAWNEACASTTAAKIVIPAGTYQLNGIELKGPCKAPIELQVDGTIQAPADP 94

BLAST of MELO3C028601.2 vs. Swiss-Prot
Match: sp|Q05967|PGLR_TOBAC (Polygalacturonase OS=Nicotiana tabacum OX=4097 GN=PG1 PE=2 SV=1)

HSP 1 Score: 67.0 bits (162), Expect = 7.7e-11
Identity = 29/54 (53.70%), Postives = 41/54 (75.93%), Query Frame = 0

Query: 1  ALANAWKDACGSTNPSKLLIPIGVYQLNQSILHGPCKSTIEVQMEGTLQAHPDP 55
          AL NA+K+AC ST+PS ++IP G + +NQ  L GPCKS +E+Q++ TL+A  DP
Sbjct: 43 ALLNAFKEACQSTSPSTIVIPKGTFTMNQVKLEGPCKSPLELQIQATLKAPSDP 96

BLAST of MELO3C028601.2 vs. Swiss-Prot
Match: sp|Q39766|PGLR_GOSBA (Polygalacturonase OS=Gossypium barbadense OX=3634 GN=G9 PE=2 SV=1)

HSP 1 Score: 64.3 bits (155), Expect = 5.0e-10
Identity = 26/51 (50.98%), Postives = 37/51 (72.55%), Query Frame = 0

Query: 4   NAWKDACGSTNPSKLLIPIGVYQLNQSILHGPCKSTIEVQMEGTLQAHPDP 55
           +AWK+AC S  PS ++IP G Y L++  L GPCK+ IE+ ++GT+QA  DP
Sbjct: 51  DAWKEACASVTPSTVVIPKGTYLLSKVNLEGPCKAPIEINVQGTIQAPADP 101

BLAST of MELO3C028601.2 vs. Swiss-Prot
Match: sp|Q39786|PGLR_GOSHI (Polygalacturonase OS=Gossypium hirsutum OX=3635 GN=G9 PE=2 SV=1)

HSP 1 Score: 64.3 bits (155), Expect = 5.0e-10
Identity = 26/51 (50.98%), Postives = 37/51 (72.55%), Query Frame = 0

Query: 4   NAWKDACGSTNPSKLLIPIGVYQLNQSILHGPCKSTIEVQMEGTLQAHPDP 55
           +AWK+AC S  PS ++IP G Y L++  L GPCK+ IE+ ++GT+QA  DP
Sbjct: 51  DAWKEACASVTPSTVVIPKGTYLLSKVNLEGPCKAPIEINVQGTIQAPADP 101

BLAST of MELO3C028601.2 vs. Swiss-Prot
Match: sp|P24548|PGLR_OENOR (Exopolygalacturonase (Fragment) OS=Oenothera organensis OX=3945 PE=2 SV=1)

HSP 1 Score: 64.3 bits (155), Expect = 5.0e-10
Identity = 27/54 (50.00%), Postives = 38/54 (70.37%), Query Frame = 0

Query: 1  ALANAWKDACGSTNPSKLLIPIGVYQLNQSILHGPCKSTIEVQMEGTLQAHPDP 55
          AL  AWK+AC S +PS +L+P G + +    L GPCKS+I +Q++GTL+A  DP
Sbjct: 5  ALTTAWKEACASASPSTILVPKGNFAVGLITLEGPCKSSIGLQLQGTLKAPADP 58

BLAST of MELO3C028601.2 vs. TrEMBL
Match: tr|A0A1S3C129|A0A1S3C129_CUCME (exopolygalacturonase-like OS=Cucumis melo OX=3656 GN=LOC103495658 PE=3 SV=1)

HSP 1 Score: 106.7 bits (265), Expect = 1.8e-20
Identity = 48/55 (87.27%), Postives = 51/55 (92.73%), Query Frame = 0

Query: 2   LANAWKDACGSTNPSKLLIPIGVYQLNQSILHGPCKSTIEVQMEGTLQAHPDPIG 57
           LANAWKDAC STNPS+LLIP GVYQLNQS+L GPC STIEV+MEGTLQAHPDPIG
Sbjct: 166 LANAWKDACASTNPSQLLIPTGVYQLNQSLLIGPCNSTIEVRMEGTLQAHPDPIG 220

BLAST of MELO3C028601.2 vs. TrEMBL
Match: tr|A0A1S4E643|A0A1S4E643_CUCME (exopolygalacturonase-like OS=Cucumis melo OX=3656 GN=LOC103504477 PE=3 SV=1)

HSP 1 Score: 85.1 bits (209), Expect = 5.5e-14
Identity = 40/57 (70.18%), Postives = 46/57 (80.70%), Query Frame = 0

Query: 1  ALANAWKDACGSTNPSKLLIPIGVYQLNQSILHGPCKSTIEVQMEGTLQAHPDPIGD 58
          ALA+AWK+AC ST PSK+LIP G Y L+QS L GPCKS IE+Q+EGTLQA  DP GD
Sbjct: 1  ALASAWKEACASTTPSKVLIPKGSYGLSQSNLKGPCKSAIELQIEGTLQAPADPKGD 57

BLAST of MELO3C028601.2 vs. TrEMBL
Match: tr|A0A1S3BN96|A0A1S3BN96_CUCME (exopolygalacturonase-like OS=Cucumis melo OX=3656 GN=LOC103491498 PE=3 SV=1)

HSP 1 Score: 82.0 bits (201), Expect = 4.7e-13
Identity = 38/57 (66.67%), Postives = 45/57 (78.95%), Query Frame = 0

Query: 1   ALANAWKDACGSTNPSKLLIPIGVYQLNQSILHGPCKSTIEVQMEGTLQAHPDPIGD 58
           ALA+AWK+AC ST PSK+LIP G Y L QS L GPCKS+IE+Q+EGT+QA  D  GD
Sbjct: 68  ALASAWKEACASTTPSKVLIPKGTYGLTQSNLKGPCKSSIELQLEGTVQASSDVKGD 124

BLAST of MELO3C028601.2 vs. TrEMBL
Match: tr|A0A1S3BML3|A0A1S3BML3_CUCME (LOW QUALITY PROTEIN: exopolygalacturonase-like OS=Cucumis melo OX=3656 GN=LOC103491497 PE=3 SV=1)

HSP 1 Score: 81.6 bits (200), Expect = 6.1e-13
Identity = 38/57 (66.67%), Postives = 45/57 (78.95%), Query Frame = 0

Query: 1   ALANAWKDACGSTNPSKLLIPIGVYQLNQSILHGPCKSTIEVQMEGTLQAHPDPIGD 58
           ALA+AWK+AC ST PSK+LIP G Y L QS L GPCKS+IE+Q+EGT+QA  D  GD
Sbjct: 57  ALASAWKEACASTTPSKVLIPKGTYGLTQSNLKGPCKSSIELQLEGTVQASVDVKGD 113

BLAST of MELO3C028601.2 vs. TrEMBL
Match: tr|A0A1S3B3X5|A0A1S3B3X5_CUCME (exopolygalacturonase-like OS=Cucumis melo OX=3656 GN=LOC103485719 PE=3 SV=1)

HSP 1 Score: 80.1 bits (196), Expect = 1.8e-12
Identity = 37/57 (64.91%), Postives = 44/57 (77.19%), Query Frame = 0

Query: 1   ALANAWKDACGSTNPSKLLIPIGVYQLNQSILHGPCKSTIEVQMEGTLQAHPDPIGD 58
           AL +AWK+ C S  PSK+LIP G Y L+QS L GPCKS+IE+Q+EGTLQA  DP GD
Sbjct: 46  ALVSAWKEGCASITPSKVLIPKGSYGLSQSNLKGPCKSSIELQIEGTLQAPSDPKGD 102

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_011658677.13.2e-2187.72PREDICTED: exopolygalacturonase-like [Cucumis sativus][more]
XP_008455507.22.7e-2087.27PREDICTED: exopolygalacturonase-like [Cucumis melo][more]
XP_011658673.13.9e-1982.46PREDICTED: exopolygalacturonase-like [Cucumis sativus][more]
XP_004140444.14.9e-1468.42PREDICTED: exopolygalacturonase-like [Cucumis sativus][more]
XP_016903689.18.3e-1470.18PREDICTED: exopolygalacturonase-like, partial [Cucumis melo][more]
Match NameE-valueIdentityDescription
AT3G07820.11.7e-0843.64Pectin lyase-like superfamily protein[more]
AT1G17150.12.2e-0845.28Pectin lyase-like superfamily protein[more]
AT3G07830.15.4e-0740.00Pectin lyase-like superfamily protein[more]
AT1G78400.19.2e-0742.59Pectin lyase-like superfamily protein[more]
AT1G05650.12.7e-0639.62Pectin lyase-like superfamily protein[more]
Match NameE-valueIdentityDescription
sp|Q40312|PGLR_MEDSA5.3e-1255.56Polygalacturonase OS=Medicago sativa OX=3879 PE=2 SV=1[more]
sp|Q05967|PGLR_TOBAC7.7e-1153.70Polygalacturonase OS=Nicotiana tabacum OX=4097 GN=PG1 PE=2 SV=1[more]
sp|Q39766|PGLR_GOSBA5.0e-1050.98Polygalacturonase OS=Gossypium barbadense OX=3634 GN=G9 PE=2 SV=1[more]
sp|Q39786|PGLR_GOSHI5.0e-1050.98Polygalacturonase OS=Gossypium hirsutum OX=3635 GN=G9 PE=2 SV=1[more]
sp|P24548|PGLR_OENOR5.0e-1050.00Exopolygalacturonase (Fragment) OS=Oenothera organensis OX=3945 PE=2 SV=1[more]
Match NameE-valueIdentityDescription
tr|A0A1S3C129|A0A1S3C129_CUCME1.8e-2087.27exopolygalacturonase-like OS=Cucumis melo OX=3656 GN=LOC103495658 PE=3 SV=1[more]
tr|A0A1S4E643|A0A1S4E643_CUCME5.5e-1470.18exopolygalacturonase-like OS=Cucumis melo OX=3656 GN=LOC103504477 PE=3 SV=1[more]
tr|A0A1S3BN96|A0A1S3BN96_CUCME4.7e-1366.67exopolygalacturonase-like OS=Cucumis melo OX=3656 GN=LOC103491498 PE=3 SV=1[more]
tr|A0A1S3BML3|A0A1S3BML3_CUCME6.1e-1366.67LOW QUALITY PROTEIN: exopolygalacturonase-like OS=Cucumis melo OX=3656 GN=LOC103... [more]
tr|A0A1S3B3X5|A0A1S3B3X5_CUCME1.8e-1264.91exopolygalacturonase-like OS=Cucumis melo OX=3656 GN=LOC103485719 PE=3 SV=1[more]
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0004650polygalacturonase activity
Vocabulary: Biological Process
TermDefinition
GO:0005975carbohydrate metabolic process
Vocabulary: INTERPRO
TermDefinition
IPR011050Pectin_lyase_fold/virulence
IPR000743Glyco_hydro_28
IPR012334Pectin_lyas_fold
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0005975 carbohydrate metabolic process
cellular_component GO:0005575 cellular_component
molecular_function GO:0004650 polygalacturonase activity

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C028601.2.1MELO3C028601.2.1mRNA


Analysis Name: InterPro Annotations of melon v3.6.1
Date Performed: 2018-09-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR012334Pectin lyase foldGENE3DG3DSA:2.160.20.10coord: 1..57
e-value: 3.7E-6
score: 28.1
IPR000743Glycoside hydrolase, family 28PFAMPF00295Glyco_hydro_28coord: 10..51
e-value: 7.6E-6
score: 25.1
NoneNo IPR availablePANTHERPTHR31375FAMILY NOT NAMEDcoord: 1..54
NoneNo IPR availablePANTHERPTHR31375:SF37PECTIN LYASE-LIKE SUPERFAMILY PROTEIN-RELATEDcoord: 1..54
IPR011050Pectin lyase fold/virulence factorSUPERFAMILYSSF51126Pectin lyase-likecoord: 1..53

The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
MELO3C028601.2Cla97C02G029030Watermelon (97103) v2medwmbB164
The following gene(s) are paralogous to this gene:

None