MELO3C027025 (gene) Melon (DHL92) v3.5.1

Overview
NameMELO3C027025
Typegene
OrganismCucumis melo (Melon (DHL92) v3.5.1)
DescriptionPlant self-incompatibility protein S1 family
Locationchr1 : 7833149 .. 7833409 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
TCAACATAACAAATGCTCTAACACATAAGGATCAACTCACCGTTCATTGCAAATCTGGCGATGACGACTTGGGAATCCACCAGCTGCAGCCTTTGGGTGGCTACGCCTTCACTTTTCGACCAGACTTCATTGGTACAACATTGTTTTACTGTACCTTCCAGTGGCCTGGTTGGTCACATAGCTTCGACATTTACAAGGATTCAAGAGATAGAGATCGTTGCAACGGTCTTTGTTTGTGGATTGTGGGTGAACAAGGTGTCT

mRNA sequence

TCAACATAACAAATGCTCTAACACATAAGGATCAACTCACCGTTCATTGCAAATCTGGCGATGACGACTTGGGAATCCACCAGCTGCAGCCTTTGGGTGGCTACGCCTTCACTTTTCGACCAGACTTCATTGGTACAACATTGTTTTACTGTACCTTCCAGTGGCCTGGTTGGTCACATAGCTTCGACATTTACAAGGATTCAAGAGATAGAGATCGTTGCAACGGTCTTTGTTTGTGGATTGTGGGTGAACAAGGTGTCT

Coding sequence (CDS)

TCAACATAACAAATGCTCTAACACATAAGGATCAACTCACCGTTCATTGCAAATCTGGCGATGACGACTTGGGAATCCACCAGCTGCAGCCTTTGGGTGGCTACGCCTTCACTTTTCGACCAGACTTCATTGGTACAACATTGTTTTACTGTACCTTCCAGTGGCCTGGTTGGTCACATAGCTTCGACATTTACAAGGATTCAAGAGATAGAGATCGTTGCAACGGTCTTTGTTTGTGGATTGTGGGTGAACAAGGTGTCT

Protein sequence

NITNALTHKDQLTVHCKSGDDDLGIHQLQPLGGYAFTFRPDFIGTTLFYCTFQWPGWSHSFDIYKDSRDRDRCNGLCLWIVGEQGV
Homology
[Close]
BLAST of MELO3C027025 vs. TrEMBL
Match: A0A0A0LI28_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G162130 PE=4 SV=1)

HSP 1 Score: 128.3 bits (321), Expect = 4.6e-27
Identity = 60/88 (68.18%), Postives = 69/88 (78.41%), Query Frame = 1 

Query: 1   NITNALTH-KDQLTVHCKSGDDDLGIHQLQPLGGYAFTFRPDFIGTTLFYCTFQWPGWSH 60
           NITNAL    +QLT+HCKSGDDDLG+HQL  L  YAF FRP+F G+TLFYC F W G SH
Sbjct: 77  NITNALKDVNNQLTIHCKSGDDDLGVHQLSHLASYAFNFRPNFWGSTLFYCAFDWTGSSH 136

Query: 61  SFDIYKDSRDRDRCNG-LCLWIVGEQGV 87
            F+IY+D RDR +CN  LCLWIVGEQG+
Sbjct: 137 YFNIYQDLRDRAKCNDTLCLWIVGEQGL 164

[Close]
BLAST of MELO3C027025 vs. TrEMBL
Match: M5XJY5_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa019850mg PE=4 SV=1)

HSP 1 Score: 101.3 bits (251), Expect = 6.1e-19
Identity = 48/85 (56.47%), Postives = 60/85 (70.59%), Query Frame = 1 

Query: 2   ITNALTHKDQLTVHCKSGDDDLGIHQLQPLGGYAFTFRPD-FIGTTLFYCTFQWPGWSHS 61
           +T+ L     LTVHCKS DDDLG+H LQP G Y F+F+P+ FI +TLF+C+FQWPG  H 
Sbjct: 36  VTSELEGGKPLTVHCKSKDDDLGVHVLQPKGSYEFSFKPNIFITSTLFFCSFQWPGAFHW 95

Query: 62  FDIYKDSRDRDRCNGLCLWIVGEQG 86
           FDIY D+RD   C+  C W+V E G
Sbjct: 96  FDIYVDARDNKICS-KCHWVVYEDG 119

[Close]
BLAST of MELO3C027025 vs. TrEMBL
Match: A0A059B0M4_EUCGR (Uncharacterized protein (Fragment) OS=Eucalyptus grandis GN=EUGRSUZ_H01885 PE=4 SV=1)

HSP 1 Score: 98.2 bits (243), Expect = 5.1e-18
Identity = 44/84 (52.38%), Postives = 57/84 (67.86%), Query Frame = 1 

Query: 2   ITNALTHKDQLTVHCKSGDDDLGIHQLQPLGGYAFTFRPDFIGTTLFYCTFQWPGWSHSF 61
           +TN +  +  LT+HCKSGD+DLG H L P G + F FRP+F  TTL++C+FQWPG  H F
Sbjct: 36  MTNRVPGQVNLTIHCKSGDEDLGSHVLAPEGHWGFQFRPNFWKTTLYFCSFQWPGNFHYF 95

Query: 62  DIYKDSRDRDRCNGLCLWIVGEQG 86
           DIYK ++ R  C+  C W VG  G
Sbjct: 96  DIYKKAKSRPGCHD-CFWNVGPDG 118

[Close]
BLAST of MELO3C027025 vs. TrEMBL
Match: M5XR83_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa018418mg PE=4 SV=1)

HSP 1 Score: 97.1 bits (240), Expect = 1.1e-17
Identity = 44/85 (51.76%), Postives = 55/85 (64.71%), Query Frame = 1 

Query: 1   NITNALTHKDQLTVHCKSGDDDLGIHQLQPLGGYAFTFRPDFIGTTLFYCTFQWPGWSHS 60
           NITN L     LT+HCKS DDDLG H L PL  Y F FRP+   TT ++C  +WPG SH 
Sbjct: 41  NITNDLGGDLTLTIHCKSADDDLGAHVLPPLISYEFVFRPNMWWTTQYFCLVEWPGASHY 100

Query: 61  FDIYKDSRDRDRCNGLCLWIVGEQG 86
            DIY   RD+DRC+ +C+W++   G
Sbjct: 101 IDIYIQKRDQDRCD-ICMWVIVPYG 124

[Close]
BLAST of MELO3C027025 vs. TrEMBL
Match: V7D2M7_PHAVU (Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_L001600g PE=4 SV=1)

HSP 1 Score: 96.7 bits (239), Expect = 1.5e-17
Identity = 43/84 (51.19%), Postives = 57/84 (67.86%), Query Frame = 1 

Query: 2   ITNALTHKDQLTVHCKSGDDDLGIHQLQPLGGYAFTFRPDFIGTTLFYCTFQWPGWSHSF 61
           +TN L     L +HCKS DDDLG+  L P G ++++F+ +F GTTLF+C+FQW    H F
Sbjct: 35  VTNELQGGRDLLLHCKSADDDLGVQHLHPQGTFSWSFKLNFFGTTLFHCSFQWDSVLHRF 94

Query: 62  DIYKDSRDRDRCNGLCLWIVGEQG 86
           DIYK +RD  RC+ LC W+V E G
Sbjct: 95  DIYKANRDAARCS-LCSWVVREDG 117

[Close]
BLAST of MELO3C027025 vs. TAIR10
Match: AT5G12060.1 (AT5G12060.1 Plant self-incompatibility protein S1 family)

HSP 1 Score: 88.2 bits (217), Expect = 2.7e-18
Identity = 44/87 (50.57%), Postives = 50/87 (57.47%), Query Frame = 1 

Query: 2   ITNALTHKDQLTVHCKSGDDDLGIHQLQPLGGYAFTFRPDFIGTTLFYCTFQWPGWSHSF 61
           ITN L     L +HCKS DDDLG+  L P G ++F FR   +GTTLFYC F WPG S  F
Sbjct: 41  ITNRLGDGLTLNLHCKSADDDLGLKILAPNGSWSFKFRTSIVGTTLFYCHFTWPGQSKRF 100

Query: 62  DIYKDSRDRDRCNGL---CLWIVGEQG 86
           DIY D RD  R +     C+W +  QG
Sbjct: 101 DIYDDDRDGVRSHISCINCIWDISIQG 127

[Close]
BLAST of MELO3C027025 vs. TAIR10
Match: AT4G16195.1 (AT4G16195.1 Plant self-incompatibility protein S1 family)

HSP 1 Score: 83.2 bits (204), Expect = 8.7e-17
Identity = 41/88 (46.59%), Postives = 52/88 (59.09%), Query Frame = 1 

Query: 2   ITNALTHKDQLTVHCKSGDDDLGIHQLQPLGGYAFTFRPDFIGTTLFYCTFQWPGWSHSF 61
           I N L ++  L  HCKS DDDLG   LQP   ++F+F   F G TL++C+F WP  SHSF
Sbjct: 52  INNDLGNQLTLLYHCKSKDDDLGNRTLQPGESWSFSFGRQFFGRTLYFCSFSWPNESHSF 111

Query: 62  DIYKDSRDR---DRC-NGLCLWIVGEQG 86
           DIYKD RD    ++C +  C+W +   G
Sbjct: 112 DIYKDHRDSGGDNKCESDRCVWKIRRNG 139

[Close]
BLAST of MELO3C027025 vs. TAIR10
Match: AT5G12070.1 (AT5G12070.1 Plant self-incompatibility protein S1 family)

HSP 1 Score: 83.2 bits (204), Expect = 8.7e-17
Identity = 42/88 (47.73%), Postives = 50/88 (56.82%), Query Frame = 1 

Query: 2   ITNALTHKDQLTVHCKSGDDDLGIHQLQPLGGYAFTFRPDFI-GTTLFYCTFQWPGWSHS 61
           ITN L     L +HCKS DDDLG+  L P G ++F FRP  + G TLF+C F WPG S  
Sbjct: 42  ITNRLGDGSTLKLHCKSADDDLGLKILAPNGSWSFKFRPSIVPGVTLFFCHFTWPGQSKW 101

Query: 62  FDIYKDSRDRDRCN---GLCLWIVGEQG 86
           F+IY D RD  R       C+W +G+ G
Sbjct: 102 FNIYDDDRDGVRMGIPCIYCIWDIGKYG 129

[Close]
BLAST of MELO3C027025 vs. TAIR10
Match: AT3G17080.1 (AT3G17080.1 Plant self-incompatibility protein S1 family)

HSP 1 Score: 73.9 bits (180), Expect = 5.3e-14
Identity = 32/57 (56.14%), Postives = 35/57 (61.40%), Query Frame = 1 

Query: 15 HCKSGDDDLGIHQLQPLGGYAFTFRPDFIGTTLFYCTFQWPGWSHSFDIYKDSRDRD 72
          HCKS +DDLG   L P   ++F F PD  G TLFYC F W   SH FDIYK SRD++
Sbjct: 43 HCKSREDDLGYQSLAPGRSWSFGFTPDIFGRTLFYCRFSWGAESHIFDIYKQSRDKE 99

[Close]
BLAST of MELO3C027025 vs. TAIR10
Match: AT1G04645.1 (AT1G04645.1 Plant self-incompatibility protein S1 family)

HSP 1 Score: 71.2 bits (173), Expect = 3.4e-13
Identity = 34/74 (45.95%), Postives = 42/74 (56.76%), Query Frame = 1 

Query: 12  LTVHCKSGDDDLGIHQLQPLGGYAFTFRPDFIGTTLFYCTFQWPGWSHSFDIYKDSRDRD 71
           LT+HCKS  DDLGIH +     Y F F+P+   +TLF+C+FQW     SFDIY   RD+ 
Sbjct: 42  LTIHCKSKQDDLGIHVVPFKQEYHFKFQPNLWKSTLFFCSFQWDSQFKSFDIYDAQRDQG 101

Query: 72  RCNGLCLWIVGEQG 86
            C+  C W +   G
Sbjct: 102 ICDD-CQWEIKPDG 114

[Close]
BLAST of MELO3C027025 vs. NCBI nr
Match: gi|659131194|ref|XP_008465559.1| (PREDICTED: uncharacterized protein LOC103503190, partial [Cucumis melo])

HSP 1 Score: 192.6 bits (488), Expect = 2.9e-46
Identity = 85/86 (98.84%), Postives = 86/86 (100.00%), Query Frame = 1 

Query: 1   NITNALTHKDQLTVHCKSGDDDLGIHQLQPLGGYAFTFRPDFIGTTLFYCTFQWPGWSHS 60
           NITNALTHKDQLTVHCKSGDDDLGIHQLQPLGGYAFTFRP+FIGTTLFYCTFQWPGWSHS
Sbjct: 17  NITNALTHKDQLTVHCKSGDDDLGIHQLQPLGGYAFTFRPNFIGTTLFYCTFQWPGWSHS 76

Query: 61  FDIYKDSRDRDRCNGLCLWIVGEQGV 87
           FDIYKDSRDRDRCNGLCLWIVGEQGV
Sbjct: 77  FDIYKDSRDRDRCNGLCLWIVGEQGV 102

[Close]
BLAST of MELO3C027025 vs. NCBI nr
Match: gi|659124055|ref|XP_008461966.1| (PREDICTED: uncharacterized protein LOC103500444 [Cucumis melo])

HSP 1 Score: 191.0 bits (484), Expect = 8.4e-46
Identity = 83/86 (96.51%), Postives = 86/86 (100.00%), Query Frame = 1 

Query: 1   NITNALTHKDQLTVHCKSGDDDLGIHQLQPLGGYAFTFRPDFIGTTLFYCTFQWPGWSHS 60
           NITNALTHKDQLTVHCKSGDDDLG+HQLQPLGGYAFTFRP+FIGTTLFYCTFQWPGWSH+
Sbjct: 89  NITNALTHKDQLTVHCKSGDDDLGVHQLQPLGGYAFTFRPNFIGTTLFYCTFQWPGWSHN 148

Query: 61  FDIYKDSRDRDRCNGLCLWIVGEQGV 87
           FDIYKDSRDRDRCNGLCLWIVGEQGV
Sbjct: 149 FDIYKDSRDRDRCNGLCLWIVGEQGV 174

[Close]
BLAST of MELO3C027025 vs. NCBI nr
Match: gi|659090020|ref|XP_008445791.1| (PREDICTED: uncharacterized protein LOC103488715 [Cucumis melo])

HSP 1 Score: 186.8 bits (473), Expect = 1.6e-44
Identity = 82/86 (95.35%), Postives = 85/86 (98.84%), Query Frame = 1 

Query: 1   NITNALTHKDQLTVHCKSGDDDLGIHQLQPLGGYAFTFRPDFIGTTLFYCTFQWPGWSHS 60
           NITNALT KDQLTVHCKSGDDDLG+HQLQPLGGYAFTFRP+FIGTTLFYCTFQWPGWSHS
Sbjct: 36  NITNALTSKDQLTVHCKSGDDDLGVHQLQPLGGYAFTFRPNFIGTTLFYCTFQWPGWSHS 95

Query: 61  FDIYKDSRDRDRCNGLCLWIVGEQGV 87
           FDIYKDSRDR+RCNGLCLWIVGEQGV
Sbjct: 96  FDIYKDSRDRNRCNGLCLWIVGEQGV 121

[Close]
BLAST of MELO3C027025 vs. NCBI nr
Match: gi|659121602|ref|XP_008460741.1| (PREDICTED: uncharacterized protein LOC103499504 [Cucumis melo])

HSP 1 Score: 138.3 bits (347), Expect = 6.4e-30
Identity = 64/88 (72.73%), Postives = 72/88 (81.82%), Query Frame = 1 

Query: 1   NITNALTH-KDQLTVHCKSGDDDLGIHQLQPLGGYAFTFRPDFIGTTLFYCTFQWPGWSH 60
           NITNAL    +QLT+HCKSGDDDLG+HQL  L  YAF FRP+F GTTLFYC FQW G+SH
Sbjct: 35  NITNALKGVNNQLTIHCKSGDDDLGVHQLSHLASYAFNFRPNFWGTTLFYCNFQWTGFSH 94

Query: 61  SFDIYKDSRDRDRCN-GLCLWIVGEQGV 87
            FDIYKD RDR++CN  LCLWIVGEQG+
Sbjct: 95  YFDIYKDIRDREKCNYTLCLWIVGEQGI 122

[Close]
BLAST of MELO3C027025 vs. NCBI nr
Match: gi|700206411|gb|KGN61530.1| (hypothetical protein Csa_2G162130 [Cucumis sativus])

HSP 1 Score: 128.3 bits (321), Expect = 6.7e-27
Identity = 60/88 (68.18%), Postives = 69/88 (78.41%), Query Frame = 1 

Query: 1   NITNALTH-KDQLTVHCKSGDDDLGIHQLQPLGGYAFTFRPDFIGTTLFYCTFQWPGWSH 60
           NITNAL    +QLT+HCKSGDDDLG+HQL  L  YAF FRP+F G+TLFYC F W G SH
Sbjct: 77  NITNALKDVNNQLTIHCKSGDDDLGVHQLSHLASYAFNFRPNFWGSTLFYCAFDWTGSSH 136

Query: 61  SFDIYKDSRDRDRCNG-LCLWIVGEQGV 87
            F+IY+D RDR +CN  LCLWIVGEQG+
Sbjct: 137 YFNIYQDLRDRAKCNDTLCLWIVGEQGL 164

The following BLAST results are available for this feature:
BLAST of MELO3C027025 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LI28_CUCSA4.6e-2768.18Uncharacterized protein OS=Cucumis sativus GN=Csa_2G162130 PE=4 SV=1[more]
M5XJY5_PRUPE6.1e-1956.47Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa019850mg PE=4 SV=1[more]
A0A059B0M4_EUCGR5.1e-1852.38Uncharacterized protein (Fragment) OS=Eucalyptus grandis GN=EUGRSUZ_H01885 PE=4 ... [more]
M5XR83_PRUPE1.1e-1751.76Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa018418mg PE=4 SV=1[more]
V7D2M7_PHAVU1.5e-1751.19Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_L001600g PE=4 SV=1[more]
BLAST of MELO3C027025 vs. TAIR10
Match NameE-valueIdentityDescription
AT5G12060.12.7e-1850.57 Plant self-incompatibility protein S1 family[more]
AT4G16195.18.7e-1746.59 Plant self-incompatibility protein S1 family[more]
AT5G12070.18.7e-1747.73 Plant self-incompatibility protein S1 family[more]
AT3G17080.15.3e-1456.14 Plant self-incompatibility protein S1 family[more]
AT1G04645.13.4e-1345.95 Plant self-incompatibility protein S1 family[more]
BLAST of MELO3C027025 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659131194|ref|XP_008465559.1|2.9e-4698.84PREDICTED: uncharacterized protein LOC103503190, partial [Cucumis melo][more]
gi|659124055|ref|XP_008461966.1|8.4e-4696.51PREDICTED: uncharacterized protein LOC103500444 [Cucumis melo][more]
gi|659090020|ref|XP_008445791.1|1.6e-4495.35PREDICTED: uncharacterized protein LOC103488715 [Cucumis melo][more]
gi|659121602|ref|XP_008460741.1|6.4e-3072.73PREDICTED: uncharacterized protein LOC103499504 [Cucumis melo][more]
gi|700206411|gb|KGN61530.1|6.7e-2768.18hypothetical protein Csa_2G162130 [Cucumis sativus][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR010264Self-incomp_S1
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C027025T1MELO3C027025T1mRNA


InterPro
Analysis Name: InterPro Annotations of melon
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR010264Plant self-incompatibility S1PFAMPF05938Self-incomp_S1coord: 2..85
score: 1.1
NoneNo IPR availablePANTHERPTHR31232FAMILY NOT NAMEDcoord: 1..85
score: 5.3
NoneNo IPR availablePANTHERPTHR31232:SF5GENOMIC DNA, CHROMOSOME 3, TAC CLONE:K14A17-RELATEDcoord: 1..85
score: 5.3

Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
MELO3C027025Cucumber (Chinese Long) v3cucmeB540
MELO3C027025Watermelon (97103) v2mewmbB230
MELO3C027025Wax gourdmewgoB258
MELO3C027025Cucumber (Gy14) v1cgymeB085
MELO3C027025Cucurbita maxima (Rimu)cmameB019
MELO3C027025Cucurbita maxima (Rimu)cmameB396
MELO3C027025Cucurbita moschata (Rifu)cmomeB008
MELO3C027025Cucurbita moschata (Rifu)cmomeB387
MELO3C027025Wild cucumber (PI 183967)cpimeB528
MELO3C027025Watermelon (Charleston Gray)mewcgB181
MELO3C027025Watermelon (97103) v1mewmB204
MELO3C027025Cucurbita pepo (Zucchini)cpemeB505
MELO3C027025Cucurbita pepo (Zucchini)cpemeB714
MELO3C027025Bottle gourd (USVL1VR-Ls)lsimeB189
MELO3C027025Cucumber (Gy14) v2cgybmeB460