MELO3C026939 (gene) Melon (DHL92) v3.5.1

Overview
NameMELO3C026939
Typegene
OrganismCucumis melo (Melon (DHL92) v3.5.1)
DescriptionE3 ubiquitin-protein ligase SHPRH
Locationchr6 : 8449527 .. 8449772 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCTACCAAGGAGAGGTGTCTGTAGCGGTGGTCGAGGAGGTCGAGGAAGAGGAGCAGGTCGTGTCCAACCTGAAGTGCAGCCTGCCGTTCAAGCTACCAATCCTACTGCACTAATCACTCATGCAGACCTCGCTGTTGTGGAGCAGAGGTTCAGGGACTTGATTATGCAAACACGGGCACCGCAGCAGCCTGGCCCTCCAGCTCCTACTCAAGCTCTAGTCGAACCCCATAGCATGTCGGACTAG

mRNA sequence

ATGCTACCAAGGAGAGGTGTCTGTAGCGGTGGTCGAGGAGGTCGAGGAAGAGGAGCAGGTCGTGTCCAACCTGAAGTGCAGCCTGCCGTTCAAGCTACCAATCCTACTGCACTAATCACTCATGCAGACCTCGCTGTTGTGGAGCAGAGGTTCAGGGACTTGATTATGCAAACACGGGCACCGCAGCAGCCTGGCCCTCCAGCTCCTACTCAAGCTCTAGTCGAACCCCATAGCATGTCGGACTAG

Coding sequence (CDS)

ATGCTACCAAGGAGAGGTGTCTGTAGCGGTGGTCGAGGAGGTCGAGGAAGAGGAGCAGGTCGTGTCCAACCTGAAGTGCAGCCTGCCGTTCAAGCTACCAATCCTACTGCACTAATCACTCATGCAGACCTCGCTGTTGTGGAGCAGAGGTTCAGGGACTTGATTATGCAAACACGGGCACCGCAGCAGCCTGGCCCTCCAGCTCCTACTCAAGCTCTAGTCGAACCCCATAGCATGTCGGACTAG

Protein sequence

MLPRRGVCSGGRGGRGRGAGRVQPEVQPAVQATNPTALITHADLAVVEQRFRDLIMQTRAPQQPGPPAPTQALVEPHSMSD*
Homology
[Close]
BLAST of MELO3C026939 vs. TrEMBL
Match: E5GBB7_CUCME (Gag protease polyprotein (Fragment) OS=Cucumis melo subsp. melo PE=4 SV=1)

HSP 1 Score: 102.8 bits (255), Expect = 2.0e-19
Identity = 49/72 (68.06%), Postives = 54/72 (75.00%), Query Frame = 1 

Query: 1   MLPRRGVCSGGRGGRGRGAGRVQPEVQPAVQATNPTALITHADLAVVEQRFRDLIMQTRA 60
           M PRRG   GGRGGRGRGAGRVQPEVQP  QA +P A +THADLA +EQRFRD+IMQ R 
Sbjct: 231 MPPRRGARRGGRGGRGRGAGRVQPEVQPVAQAPDPAAPVTHADLAAMEQRFRDMIMQMRE 290

Query: 61  PQQPGPPAPTQA 73
            Q+P  P P  A
Sbjct: 291 QQKPASPTPAPA 302

[Close]
BLAST of MELO3C026939 vs. TrEMBL
Match: B0F820_CUCME (Putative uncharacterized protein OS=Cucumis melo PE=4 SV=1)

HSP 1 Score: 72.8 bits (177), Expect = 2.2e-10
Identity = 35/50 (70.00%), Postives = 39/50 (78.00%), Query Frame = 1 

Query: 1  MLPRRGVCSGGRGGRGRGAGRVQPEVQPAVQATNPTALITHADLAVVEQR 51
          M PRRG    GRGGRGRGAGRVQP+VQP  QAT+  A +THADLA +EQR
Sbjct: 47 MPPRRGARRSGRGGRGRGAGRVQPKVQPVAQATDLVAPVTHADLAAMEQR 96

[Close]
BLAST of MELO3C026939 vs. NCBI nr
Match: gi|307135903|gb|ADN33767.1| (gag protease polyprotein [Cucumis melo subsp. melo])

HSP 1 Score: 102.8 bits (255), Expect = 2.9e-19
Identity = 49/72 (68.06%), Postives = 54/72 (75.00%), Query Frame = 1 

Query: 1   MLPRRGVCSGGRGGRGRGAGRVQPEVQPAVQATNPTALITHADLAVVEQRFRDLIMQTRA 60
           M PRRG   GGRGGRGRGAGRVQPEVQP  QA +P A +THADLA +EQRFRD+IMQ R 
Sbjct: 231 MPPRRGARRGGRGGRGRGAGRVQPEVQPVAQAPDPAAPVTHADLAAMEQRFRDMIMQMRE 290

Query: 61  PQQPGPPAPTQA 73
            Q+P  P P  A
Sbjct: 291 QQKPASPTPAPA 302

[Close]
BLAST of MELO3C026939 vs. NCBI nr
Match: gi|164449265|gb|ABY56094.1| (hypothetical protein [Cucumis melo])

HSP 1 Score: 72.8 bits (177), Expect = 3.2e-10
Identity = 35/50 (70.00%), Postives = 39/50 (78.00%), Query Frame = 1 

Query: 1  MLPRRGVCSGGRGGRGRGAGRVQPEVQPAVQATNPTALITHADLAVVEQR 51
          M PRRG    GRGGRGRGAGRVQP+VQP  QAT+  A +THADLA +EQR
Sbjct: 47 MPPRRGARRSGRGGRGRGAGRVQPKVQPVAQATDLVAPVTHADLAAMEQR 96

The following BLAST results are available for this feature:
BLAST of MELO3C026939 vs. TrEMBL
Match NameE-valueIdentityDescription
E5GBB7_CUCME2.0e-1968.06Gag protease polyprotein (Fragment) OS=Cucumis melo subsp. melo PE=4 SV=1[more]
B0F820_CUCME2.2e-1070.00Putative uncharacterized protein OS=Cucumis melo PE=4 SV=1[more]
BLAST of MELO3C026939 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|307135903|gb|ADN33767.1|2.9e-1968.06gag protease polyprotein [Cucumis melo subsp. melo][more]
gi|164449265|gb|ABY56094.1|3.2e-1070.00hypothetical protein [Cucumis melo][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006508 proteolysis
cellular_component GO:0005575 cellular_component
molecular_function GO:0004190 aspartic-type endopeptidase activity
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0008270 zinc ion binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C026939T1MELO3C026939T1mRNA


Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
MELO3C026939Cucurbita pepo (Zucchini)cpemeB043
MELO3C026939Cucurbita pepo (Zucchini)cpemeB176
MELO3C026939Cucurbita pepo (Zucchini)cpemeB701
MELO3C026939Bottle gourd (USVL1VR-Ls)lsimeB035
MELO3C026939Bottle gourd (USVL1VR-Ls)lsimeB368
MELO3C026939Bottle gourd (USVL1VR-Ls)lsimeB375
MELO3C026939Cucumber (Gy14) v2cgybmeB218
MELO3C026939Cucumber (Gy14) v2cgybmeB354
MELO3C026939Silver-seed gourdcarmeB0513
MELO3C026939Silver-seed gourdcarmeB0546
MELO3C026939Silver-seed gourdcarmeB0966
MELO3C026939Cucumber (Chinese Long) v3cucmeB256
MELO3C026939Cucumber (Chinese Long) v3cucmeB416
MELO3C026939Watermelon (97103) v2mewmbB425
MELO3C026939Watermelon (97103) v2mewmbB434
MELO3C026939Watermelon (97103) v2mewmbB437
MELO3C026939Wax gourdmewgoB517
MELO3C026939Wax gourdmewgoB530
MELO3C026939Melon (DHL92) v3.5.1memeB016
MELO3C026939Melon (DHL92) v3.5.1memeB150
MELO3C026939Cucumber (Gy14) v1cgymeB368
MELO3C026939Cucumber (Gy14) v1cgymeB438
MELO3C026939Cucurbita maxima (Rimu)cmameB280
MELO3C026939Cucurbita maxima (Rimu)cmameB296
MELO3C026939Cucurbita maxima (Rimu)cmameB375
MELO3C026939Cucurbita maxima (Rimu)cmameB579
MELO3C026939Cucurbita moschata (Rifu)cmomeB272
MELO3C026939Cucurbita moschata (Rifu)cmomeB289
MELO3C026939Cucurbita moschata (Rifu)cmomeB368
MELO3C026939Cucurbita moschata (Rifu)cmomeB567
MELO3C026939Wild cucumber (PI 183967)cpimeB249
MELO3C026939Wild cucumber (PI 183967)cpimeB404
MELO3C026939Cucumber (Chinese Long) v2cumeB413
MELO3C026939Watermelon (Charleston Gray)mewcgB423
MELO3C026939Watermelon (Charleston Gray)mewcgB427
MELO3C026939Watermelon (Charleston Gray)mewcgB433
MELO3C026939Watermelon (97103) v1mewmB461
MELO3C026939Watermelon (97103) v1mewmB470
MELO3C026939Watermelon (97103) v1mewmB482