MELO3C026928 (gene) Melon (DHL92) v3.5.1

Overview
NameMELO3C026928
Typegene
OrganismCucumis melo (Melon (DHL92) v3.5.1)
DescriptionNAD-dependent malic enzyme
Locationchr6 : 8275611 .. 8276026 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGATGAATTGGAGGAGGGAGAGGCAAATCAAAGTAATGAGAAAGGTCTTGATCTAATGGAAACAAGTAAGAGTGGTTTACTAACAAGCCCATCAGGAAGAGTTAATGATATATCTATGGAAGATAATACAGAAACAAAAGACGGTTTGATCAGTCCGGTAAAGATTTCGAGCAAGACGTTCTTGCCTCAAGAAGGTAGTTCTCTCGTAAATTTAAGCCTCCCCATGCCTGGTGCAAAGAAACCGAACTCGAAGAGGCCAGCATTTGTTTCTGTAGTACTTCCCAAACCGATTACATCTGGTTCAATTGGAATTCAATTCAATGAAAGTAAAGTTGATAGTGTGGAAAAAAAGAAAATCCATTTTTCTCTTTGCTCACTGGCGGCAAAGCCAAAAGCAGTTTATTTTAAGCCGTAG

mRNA sequence

ATGATGAATTGGAGGAGGGAGAGGCAAATCAAAGTAATGAGAAAGGTCTTGATCTAATGGAAACAAGTAAGAGTGGTTTACTAACAAGCCCATCAGGAAGAGTTAATGATATATCTATGGAAGATAATACAGAAACAAAAGACGGTTTGATCAGTCCGGTAAAGATTTCGAGCAAGACGTTCTTGCCTCAAGAAGGTAGTTCTCTCGTAAATTTAAGCCTCCCCATGCCTGGTGCAAAGAAACCGAACTCGAAGAGGCCAGCATTTGTTTCTGTAGTACTTCCCAAACCGATTACATCTGGTTCAATTGGAATTCAATTCAATGAAAGTAAAGTTGATAGTGTGGAAAAAAAGAAAATCCATTTTTCTCTTTGCTCACTGGCGGCAAAGCCAAAAGCAGTTTATTTTAAGCCGTAG

Coding sequence (CDS)

ATGATGAATTGGAGGAGGGAGAGGCAAATCAAAGTAATGAGAAAGGTCTTGATCTAATGGAAACAAGTAAGAGTGGTTTACTAACAAGCCCATCAGGAAGAGTTAATGATATATCTATGGAAGATAATACAGAAACAAAAGACGGTTTGATCAGTCCGGTAAAGATTTCGAGCAAGACGTTCTTGCCTCAAGAAGGTAGTTCTCTCGTAAATTTAAGCCTCCCCATGCCTGGTGCAAAGAAACCGAACTCGAAGAGGCCAGCATTTGTTTCTGTAGTACTTCCCAAACCGATTACATCTGGTTCAATTGGAATTCAATTCAATGAAAGTAAAGTTGATAGTGTGGAAAAAAAGAAAATCCATTTTTCTCTTTGCTCACTGGCGGCAAAGCCAAAAGCAGTTTATTTTAAGCCGTAG

Protein sequence

DELEEGEANQSNEKGLDLMETSKSGLLTSPSGRVNDISMEDNTETKDGLISPVKISSKTFLPQEGSSLVNLSLPMPGAKKPNSKRPAFVSVVLPKPITSGSIGIQFNESKVDSVEKKKIHFSLCSLAAKPKAVYFKP*
Homology
[Close]
BLAST of MELO3C026928 vs. TrEMBL
Match: A0A0A0LBJ0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G183980 PE=4 SV=1)

HSP 1 Score: 194.9 bits (494), Expect = 6.5e-47
Identity = 101/134 (75.37%), Postives = 113/134 (84.33%), Query Frame = 1 

Query: 2   ELEEGEANQSNEKGLDLMETSKSGLLTSPSGRVNDISMEDNTETKDGLISPVKISSKTFL 61
           E EE +AN+SNEKGLDLM+T+ +GLL SPSG VNDISMEDNTETKDGLISPVK +SKTFL
Sbjct: 187 ESEEADANESNEKGLDLMKTTPNGLLASPSGSVNDISMEDNTETKDGLISPVKTTSKTFL 246

Query: 62  PQEGSSLVNLSLPMPGAKKPNSKRPAFVSVVLPKPITSGSIGIQFNESKVDSVEKKKIHF 121
           PQEG+SLVN S PMP AKKPNSKRPAFVSV LPKPITSG +GIQFNESKVDSVEK+   F
Sbjct: 247 PQEGNSLVNSSPPMPSAKKPNSKRPAFVSVELPKPITSGGVGIQFNESKVDSVEKENPFF 306

Query: 122 SLCSLAAKPKAVYF 136
           +L +   K K+  F
Sbjct: 307 TLLT-GGKAKSSLF 319

[Close]
BLAST of MELO3C026928 vs. NCBI nr
Match: gi|700202283|gb|KGN57416.1| (hypothetical protein Csa_3G183980 [Cucumis sativus])

HSP 1 Score: 194.9 bits (494), Expect = 9.3e-47
Identity = 101/134 (75.37%), Postives = 113/134 (84.33%), Query Frame = 1 

Query: 2   ELEEGEANQSNEKGLDLMETSKSGLLTSPSGRVNDISMEDNTETKDGLISPVKISSKTFL 61
           E EE +AN+SNEKGLDLM+T+ +GLL SPSG VNDISMEDNTETKDGLISPVK +SKTFL
Sbjct: 187 ESEEADANESNEKGLDLMKTTPNGLLASPSGSVNDISMEDNTETKDGLISPVKTTSKTFL 246

Query: 62  PQEGSSLVNLSLPMPGAKKPNSKRPAFVSVVLPKPITSGSIGIQFNESKVDSVEKKKIHF 121
           PQEG+SLVN S PMP AKKPNSKRPAFVSV LPKPITSG +GIQFNESKVDSVEK+   F
Sbjct: 247 PQEGNSLVNSSPPMPSAKKPNSKRPAFVSVELPKPITSGGVGIQFNESKVDSVEKENPFF 306

Query: 122 SLCSLAAKPKAVYF 136
           +L +   K K+  F
Sbjct: 307 TLLT-GGKAKSSLF 319

[Close]
BLAST of MELO3C026928 vs. NCBI nr
Match: gi|449445985|ref|XP_004140752.1| (PREDICTED: uncharacterized protein LOC101210672 [Cucumis sativus])

HSP 1 Score: 194.9 bits (494), Expect = 9.3e-47
Identity = 101/134 (75.37%), Postives = 113/134 (84.33%), Query Frame = 1 

Query: 2   ELEEGEANQSNEKGLDLMETSKSGLLTSPSGRVNDISMEDNTETKDGLISPVKISSKTFL 61
           E EE +AN+SNEKGLDLM+T+ +GLL SPSG VNDISMEDNTETKDGLISPVK +SKTFL
Sbjct: 262 ESEEADANESNEKGLDLMKTTPNGLLASPSGSVNDISMEDNTETKDGLISPVKTTSKTFL 321

Query: 62  PQEGSSLVNLSLPMPGAKKPNSKRPAFVSVVLPKPITSGSIGIQFNESKVDSVEKKKIHF 121
           PQEG+SLVN S PMP AKKPNSKRPAFVSV LPKPITSG +GIQFNESKVDSVEK+   F
Sbjct: 322 PQEGNSLVNSSPPMPSAKKPNSKRPAFVSVELPKPITSGGVGIQFNESKVDSVEKENPFF 381

Query: 122 SLCSLAAKPKAVYF 136
           +L +   K K+  F
Sbjct: 382 TLLT-GGKAKSSLF 394

[Close]
BLAST of MELO3C026928 vs. NCBI nr
Match: gi|659132548|ref|XP_008466257.1| (PREDICTED: uncharacterized protein LOC103503723 isoform X2 [Cucumis melo])

HSP 1 Score: 192.2 bits (487), Expect = 6.0e-46
Identity = 105/137 (76.64%), Postives = 116/137 (84.67%), Query Frame = 1 

Query: 1   DELEEGEANQSNEKGLDLMETSKSGLLTSPSGRVNDISMEDNT--ETKDGLISPVKISSK 60
           DE EEGEA+QSN+KGL LM+T+K+GLL SPSGRVNDIS+EDNT  ETKDGLISPVK SSK
Sbjct: 148 DESEEGEAHQSNDKGLGLMKTTKNGLLASPSGRVNDISLEDNTNTETKDGLISPVKTSSK 207

Query: 61  TFLPQEGSSLVNLSLPMPGAKKPNSKRPAFVSVVLPKPITSGSIGIQFNESKVDSVEKKK 120
           TFLPQEGSSLVN SLPMP AKK NSKR AFVSV LPKPITSGS+GIQFNESKV+SVEK+ 
Sbjct: 208 TFLPQEGSSLVNSSLPMPVAKKSNSKRLAFVSVELPKPITSGSVGIQFNESKVNSVEKEN 267

Query: 121 IHFSLCSLAAKPKAVYF 136
             FSL +   K K+  F
Sbjct: 268 PFFSLLN-GGKAKSSLF 283

[Close]
BLAST of MELO3C026928 vs. NCBI nr
Match: gi|659132544|ref|XP_008466255.1| (PREDICTED: uncharacterized protein LOC103503723 isoform X1 [Cucumis melo])

HSP 1 Score: 192.2 bits (487), Expect = 6.0e-46
Identity = 105/137 (76.64%), Postives = 116/137 (84.67%), Query Frame = 1 

Query: 1   DELEEGEANQSNEKGLDLMETSKSGLLTSPSGRVNDISMEDNT--ETKDGLISPVKISSK 60
           DE EEGEA+QSN+KGL LM+T+K+GLL SPSGRVNDIS+EDNT  ETKDGLISPVK SSK
Sbjct: 219 DESEEGEAHQSNDKGLGLMKTTKNGLLASPSGRVNDISLEDNTNTETKDGLISPVKTSSK 278

Query: 61  TFLPQEGSSLVNLSLPMPGAKKPNSKRPAFVSVVLPKPITSGSIGIQFNESKVDSVEKKK 120
           TFLPQEGSSLVN SLPMP AKK NSKR AFVSV LPKPITSGS+GIQFNESKV+SVEK+ 
Sbjct: 279 TFLPQEGSSLVNSSLPMPVAKKSNSKRLAFVSVELPKPITSGSVGIQFNESKVNSVEKEN 338

Query: 121 IHFSLCSLAAKPKAVYF 136
             FSL +   K K+  F
Sbjct: 339 PFFSLLN-GGKAKSSLF 354

The following BLAST results are available for this feature:
BLAST of MELO3C026928 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LBJ0_CUCSA6.5e-4775.37Uncharacterized protein OS=Cucumis sativus GN=Csa_3G183980 PE=4 SV=1[more]
BLAST of MELO3C026928 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700202283|gb|KGN57416.1|9.3e-4775.37hypothetical protein Csa_3G183980 [Cucumis sativus][more]
gi|449445985|ref|XP_004140752.1|9.3e-4775.37PREDICTED: uncharacterized protein LOC101210672 [Cucumis sativus][more]
gi|659132548|ref|XP_008466257.1|6.0e-4676.64PREDICTED: uncharacterized protein LOC103503723 isoform X2 [Cucumis melo][more]
gi|659132544|ref|XP_008466255.1|6.0e-4676.64PREDICTED: uncharacterized protein LOC103503723 isoform X1 [Cucumis melo][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C026928T1MELO3C026928T1mRNA


Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
MELO3C026928Melon (DHL92) v3.5.1memeB016
MELO3C026928Melon (DHL92) v3.5.1memeB150
MELO3C026928Cucumber (Gy14) v1cgymeB344
MELO3C026928Cucumber (Gy14) v1cgymeB368
MELO3C026928Cucumber (Gy14) v1cgymeB438
MELO3C026928Cucurbita maxima (Rimu)cmameB377
MELO3C026928Cucurbita maxima (Rimu)cmameB295
MELO3C026928Cucurbita maxima (Rimu)cmameB296
MELO3C026928Cucurbita maxima (Rimu)cmameB375
MELO3C026928Cucurbita maxima (Rimu)cmameB579
MELO3C026928Cucurbita moschata (Rifu)cmomeB371
MELO3C026928Cucurbita moschata (Rifu)cmomeB288
MELO3C026928Cucurbita moschata (Rifu)cmomeB289
MELO3C026928Cucurbita moschata (Rifu)cmomeB368
MELO3C026928Cucurbita moschata (Rifu)cmomeB567
MELO3C026928Wild cucumber (PI 183967)cpimeB234
MELO3C026928Wild cucumber (PI 183967)cpimeB249
MELO3C026928Wild cucumber (PI 183967)cpimeB404
MELO3C026928Cucumber (Chinese Long) v2cumeB413
MELO3C026928Watermelon (97103) v1mewmB469
MELO3C026928Watermelon (Charleston Gray)mewcgB423
MELO3C026928Watermelon (Charleston Gray)mewcgB427
MELO3C026928Watermelon (Charleston Gray)mewcgB431
MELO3C026928Watermelon (Charleston Gray)mewcgB433
MELO3C026928Watermelon (97103) v1mewmB461
MELO3C026928Watermelon (97103) v1mewmB470
MELO3C026928Watermelon (97103) v1mewmB482
MELO3C026928Cucurbita pepo (Zucchini)cpemeB042
MELO3C026928Cucurbita pepo (Zucchini)cpemeB043
MELO3C026928Cucurbita pepo (Zucchini)cpemeB188
MELO3C026928Cucurbita pepo (Zucchini)cpemeB701
MELO3C026928Bottle gourd (USVL1VR-Ls)lsimeB035
MELO3C026928Bottle gourd (USVL1VR-Ls)lsimeB368
MELO3C026928Bottle gourd (USVL1VR-Ls)lsimeB375
MELO3C026928Bottle gourd (USVL1VR-Ls)lsimeB384
MELO3C026928Cucumber (Gy14) v2cgybmeB219
MELO3C026928Cucumber (Gy14) v2cgybmeB218
MELO3C026928Cucumber (Gy14) v2cgybmeB354
MELO3C026928Silver-seed gourdcarmeB0513
MELO3C026928Silver-seed gourdcarmeB0545
MELO3C026928Silver-seed gourdcarmeB0546
MELO3C026928Silver-seed gourdcarmeB0965
MELO3C026928Silver-seed gourdcarmeB0966
MELO3C026928Cucumber (Chinese Long) v3cucmeB255
MELO3C026928Cucumber (Chinese Long) v3cucmeB256
MELO3C026928Cucumber (Chinese Long) v3cucmeB416
MELO3C026928Watermelon (97103) v2mewmbB425
MELO3C026928Watermelon (97103) v2mewmbB434
MELO3C026928Watermelon (97103) v2mewmbB437
MELO3C026928Watermelon (97103) v2mewmbB441
MELO3C026928Wax gourdmewgoB517
MELO3C026928Wax gourdmewgoB530
MELO3C026928Wax gourdmewgoB546