MELO3C026911 (gene) Melon (DHL92) v3.5.1

NameMELO3C026911
Typegene
OrganismCucumis melo (Melon (DHL92) v3.5.1)
DescriptionGamma-tubulin complex component, putative
Locationchr0 : 712759 .. 713400 (-)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCGCCTACCCCCTCGCCAATCAACTGCTGAAGCTGATCTTATGATCCCATTCCAGTTGGTAATTTTTCTTGTGCAAGATGATTTGATTTCGACTGTTCCAATTCTTCATTATGTATTTGAAATGAAACTTTATTCTTGGTTTATGTGATTGCATAAACTTTGTCTGCACAATTCATTTACCATGCAGGCTGCAACAAAGACTACAAGTGAAGAAGACAGATACTTTTCTAGAGTATCATTGCGGTTAGTAGTTGCCTAATGGTGAACTAAAATTATATATGTATAATTGGAAACTAGCTTAGTTGGTTTTAAATTGCTATTGCCCCATTTATAATTGTATATGTATAATTGAGAACTAGCTTGGTTGGTTTTAAATTGCTTATTACATCATTTAAGGGTATCAATTGTGTCTTTGGTAATCCTTTTCACTTCTTCCAGGATGCCATCTTTTGGAGTCAAGGTCAAGTCTGCCCAAGGAGACCTGAAGGAAAAACCTATCATTGATGGAAATCCTGGCGGTGCTCTATCATCAAATTTATCGTTAGATATGTCTCTTGATGGTTGGGATGGTGTTTCTCTTGAATACTATATTGATTGGCCTCTGCAATTATTCTTTACTCAAGAAGTGCTCTCTAAGTAA

mRNA sequence

ATGCGCCTACCCCCTCGCCAATCAACTGCTGAAGCTGATCTTATGATCCCATTCCAGTTGGCTGCAACAAAGACTACAAGTGAAGAAGACAGATACTTTTCTAGAGTATCATTGCGGATGCCATCTTTTGGAGTCAAGGTCAAGTCTGCCCAAGGAGACCTGAAGGAAAAACCTATCATTGATGGAAATCCTGGCGGTGCTCTATCATCAAATTTATCGTTAGATATGTCTCTTGATGGTTGGGATGGTGTTTCTCTTGAATACTATATTGATTGGCCTCTGCAATTATTCTTTACTCAAGAAGTGCTCTCTAAGTAA

Coding sequence (CDS)

ATGCGCCTACCCCCTCGCCAATCAACTGCTGAAGCTGATCTTATGATCCCATTCCAGTTGGCTGCAACAAAGACTACAAGTGAAGAAGACAGATACTTTTCTAGAGTATCATTGCGGATGCCATCTTTTGGAGTCAAGGTCAAGTCTGCCCAAGGAGACCTGAAGGAAAAACCTATCATTGATGGAAATCCTGGCGGTGCTCTATCATCAAATTTATCGTTAGATATGTCTCTTGATGGTTGGGATGGTGTTTCTCTTGAATACTATATTGATTGGCCTCTGCAATTATTCTTTACTCAAGAAGTGCTCTCTAAGTAA

Protein sequence

MRLPPRQSTAEADLMIPFQLAATKTTSEEDRYFSRVSLRMPSFGVKVKSAQGDLKEKPIIDGNPGGALSSNLSLDMSLDGWDGVSLEYYIDWPLQLFFTQEVLSK*
BLAST of MELO3C026911 vs. Swiss-Prot
Match: GACP4_ARATH (Gamma-tubulin complex component 4 OS=Arabidopsis thaliana GN=GCP4 PE=2 SV=2)

HSP 1 Score: 142.5 bits (358), Expect = 2.6e-33
Identity = 70/106 (66.04%), Postives = 84/106 (79.25%), Query Frame = 1

Query: 1   MRLPPRQSTAEADLMIPFQLAATKTTSEEDRYFSRVSLRMPSFGVKVKSAQGDL-KEKPI 60
           MRLPPRQST E+DLM+PFQLAATKT +EED+YFSRVSLRMPSFGV V+S+Q D+ + K  
Sbjct: 431 MRLPPRQSTGESDLMVPFQLAATKTIAEEDKYFSRVSLRMPSFGVTVRSSQADMVRSKVS 490

Query: 61  IDGNPGGALSSNLSLDMSLDGWDGVSLEYYIDWPLQLFFTQEVLSK 106
           + G       +NL+ D S+DGWD ++LEY +DWP+QLFFTQEVLSK
Sbjct: 491 LTG------KANLTSDTSVDGWDAIALEYSVDWPMQLFFTQEVLSK 530

BLAST of MELO3C026911 vs. Swiss-Prot
Match: GCP4_MEDTR (Gamma-tubulin complex component 4 homolog OS=Medicago truncatula GN=85P PE=2 SV=1)

HSP 1 Score: 134.4 bits (337), Expect = 7.2e-31
Identity = 67/107 (62.62%), Postives = 83/107 (77.57%), Query Frame = 1

Query: 1   MRLPPRQSTAEADLMIPFQLAATKTTSEEDRYFSRVSLRMPSFGVKVKSAQGDLKE--KP 60
           MRLPPRQSTAEADLM+PFQLA+ KT  EED+YFS+VSLRMPS+G+ VK +  ++ +    
Sbjct: 414 MRLPPRQSTAEADLMVPFQLASLKTIGEEDKYFSKVSLRMPSYGITVKPSLLNVPKATSA 473

Query: 61  IIDGNPGGALSSNLSLDMSLDGWDGVSLEYYIDWPLQLFFTQEVLSK 106
             DG  G ++ SN S +MS+DGWDG++LEY I+WPL LFFTQEVLS+
Sbjct: 474 AADGISGASI-SNASSEMSVDGWDGIALEYSIEWPLHLFFTQEVLSR 519

BLAST of MELO3C026911 vs. TrEMBL
Match: A0A0A0LXP4_CUCSA (Gamma-tubulin complex component OS=Cucumis sativus GN=Csa_1G616260 PE=3 SV=1)

HSP 1 Score: 204.1 bits (518), Expect = 8.2e-50
Identity = 103/105 (98.10%), Postives = 103/105 (98.10%), Query Frame = 1

Query: 1   MRLPPRQSTAEADLMIPFQLAATKTTSEEDRYFSRVSLRMPSFGVKVKSAQGDLKEKPII 60
           MRLPPRQSTAEADLMIPFQLAATKTTSEEDRYF RVSLRMPSFGVKVKSAQGDLKEKPII
Sbjct: 214 MRLPPRQSTAEADLMIPFQLAATKTTSEEDRYFCRVSLRMPSFGVKVKSAQGDLKEKPII 273

Query: 61  DGNPGGALSSNLSLDMSLDGWDGVSLEYYIDWPLQLFFTQEVLSK 106
           DGNPGGAL SNLSLDMSLDGWDGVSLEYYIDWPLQLFFTQEVLSK
Sbjct: 274 DGNPGGAL-SNLSLDMSLDGWDGVSLEYYIDWPLQLFFTQEVLSK 317

BLAST of MELO3C026911 vs. TrEMBL
Match: A0A067H5D9_CITSI (Gamma-tubulin complex component OS=Citrus sinensis GN=CISIN_1g004500mg PE=3 SV=1)

HSP 1 Score: 156.4 bits (394), Expect = 2.0e-35
Identity = 81/106 (76.42%), Postives = 88/106 (83.02%), Query Frame = 1

Query: 1   MRLPPRQSTAEADLMIPFQLAATKTTSEEDRYFSRVSLRMPSFGVKVKSAQGD-LKEKPI 60
           MRLPPRQSTAEADLM+PFQLAA KT SEED+YFSRVSLRMPSFG+ VKS   D LK K  
Sbjct: 425 MRLPPRQSTAEADLMVPFQLAAIKTISEEDKYFSRVSLRMPSFGITVKSPHVDLLKAKAY 484

Query: 61  IDGNPGGALSSNLSLDMSLDGWDGVSLEYYIDWPLQLFFTQEVLSK 106
            DG  G ALSS  S D+SLDGWDG++LEY +DWPLQLFFTQEVLSK
Sbjct: 485 ADGTSGAALSSGNS-DISLDGWDGIALEYSVDWPLQLFFTQEVLSK 529

BLAST of MELO3C026911 vs. TrEMBL
Match: V4VW99_9ROSI (Gamma-tubulin complex component OS=Citrus clementina GN=CICLE_v10018978mg PE=3 SV=1)

HSP 1 Score: 156.4 bits (394), Expect = 2.0e-35
Identity = 81/106 (76.42%), Postives = 88/106 (83.02%), Query Frame = 1

Query: 1   MRLPPRQSTAEADLMIPFQLAATKTTSEEDRYFSRVSLRMPSFGVKVKSAQGD-LKEKPI 60
           MRLPPRQSTAEADLM+PFQLAA KT SEED+YFSRVSLRMPSFG+ VKS   D LK K  
Sbjct: 425 MRLPPRQSTAEADLMVPFQLAAIKTISEEDKYFSRVSLRMPSFGITVKSPHVDLLKAKAY 484

Query: 61  IDGNPGGALSSNLSLDMSLDGWDGVSLEYYIDWPLQLFFTQEVLSK 106
            DG  G ALSS  S D+SLDGWDG++LEY +DWPLQLFFTQEVLSK
Sbjct: 485 ADGTSGAALSSGNS-DISLDGWDGIALEYSVDWPLQLFFTQEVLSK 529

BLAST of MELO3C026911 vs. TrEMBL
Match: A0A067HGP5_CITSI (Gamma-tubulin complex component OS=Citrus sinensis GN=CISIN_1g004500mg PE=3 SV=1)

HSP 1 Score: 156.4 bits (394), Expect = 2.0e-35
Identity = 81/106 (76.42%), Postives = 88/106 (83.02%), Query Frame = 1

Query: 1   MRLPPRQSTAEADLMIPFQLAATKTTSEEDRYFSRVSLRMPSFGVKVKSAQGD-LKEKPI 60
           MRLPPRQSTAEADLM+PFQLAA KT SEED+YFSRVSLRMPSFG+ VKS   D LK K  
Sbjct: 425 MRLPPRQSTAEADLMVPFQLAAIKTISEEDKYFSRVSLRMPSFGITVKSPHVDLLKAKAY 484

Query: 61  IDGNPGGALSSNLSLDMSLDGWDGVSLEYYIDWPLQLFFTQEVLSK 106
            DG  G ALSS  S D+SLDGWDG++LEY +DWPLQLFFTQEVLSK
Sbjct: 485 ADGTSGAALSSGNS-DISLDGWDGIALEYSVDWPLQLFFTQEVLSK 529

BLAST of MELO3C026911 vs. TrEMBL
Match: B9SAS5_RICCO (Gamma-tubulin complex component OS=Ricinus communis GN=RCOM_1178380 PE=3 SV=1)

HSP 1 Score: 153.3 bits (386), Expect = 1.7e-34
Identity = 78/106 (73.58%), Postives = 88/106 (83.02%), Query Frame = 1

Query: 1   MRLPPRQSTAEADLMIPFQLAATKTTSEEDRYFSRVSLRMPSFGVKVKSAQGDL-KEKPI 60
           MRLPPRQSTAEADLM+PFQLAA KT  EED+YFSRVSLRMPSFG+ VKS+Q DL K K  
Sbjct: 430 MRLPPRQSTAEADLMVPFQLAAIKTIGEEDKYFSRVSLRMPSFGITVKSSQVDLPKSKAH 489

Query: 61  IDGNPGGALSSNLSLDMSLDGWDGVSLEYYIDWPLQLFFTQEVLSK 106
            D N G AL SN + +M +DGWDG++LEY +DWPLQLFFTQEVLSK
Sbjct: 490 SDSNSGAAL-SNAASEMFIDGWDGIALEYAVDWPLQLFFTQEVLSK 534

BLAST of MELO3C026911 vs. TAIR10
Match: AT3G53760.1 (AT3G53760.1 GAMMA-TUBULIN COMPLEX PROTEIN 4)

HSP 1 Score: 142.5 bits (358), Expect = 1.5e-34
Identity = 70/106 (66.04%), Postives = 84/106 (79.25%), Query Frame = 1

Query: 1   MRLPPRQSTAEADLMIPFQLAATKTTSEEDRYFSRVSLRMPSFGVKVKSAQGDL-KEKPI 60
           MRLPPRQST E+DLM+PFQLAATKT +EED+YFSRVSLRMPSFGV V+S+Q D+ + K  
Sbjct: 431 MRLPPRQSTGESDLMVPFQLAATKTIAEEDKYFSRVSLRMPSFGVTVRSSQADMVRSKVS 490

Query: 61  IDGNPGGALSSNLSLDMSLDGWDGVSLEYYIDWPLQLFFTQEVLSK 106
           + G       +NL+ D S+DGWD ++LEY +DWP+QLFFTQEVLSK
Sbjct: 491 LTG------KANLTSDTSVDGWDAIALEYSVDWPMQLFFTQEVLSK 530

BLAST of MELO3C026911 vs. NCBI nr
Match: gi|659130829|ref|XP_008465374.1| (PREDICTED: gamma-tubulin complex component 4 homolog [Cucumis melo])

HSP 1 Score: 212.2 bits (539), Expect = 4.3e-52
Identity = 105/105 (100.00%), Postives = 105/105 (100.00%), Query Frame = 1

Query: 1   MRLPPRQSTAEADLMIPFQLAATKTTSEEDRYFSRVSLRMPSFGVKVKSAQGDLKEKPII 60
           MRLPPRQSTAEADLMIPFQLAATKTTSEEDRYFSRVSLRMPSFGVKVKSAQGDLKEKPII
Sbjct: 431 MRLPPRQSTAEADLMIPFQLAATKTTSEEDRYFSRVSLRMPSFGVKVKSAQGDLKEKPII 490

Query: 61  DGNPGGALSSNLSLDMSLDGWDGVSLEYYIDWPLQLFFTQEVLSK 106
           DGNPGGALSSNLSLDMSLDGWDGVSLEYYIDWPLQLFFTQEVLSK
Sbjct: 491 DGNPGGALSSNLSLDMSLDGWDGVSLEYYIDWPLQLFFTQEVLSK 535

BLAST of MELO3C026911 vs. NCBI nr
Match: gi|659099008|ref|XP_008450387.1| (PREDICTED: gamma-tubulin complex component 4 homolog isoform X1 [Cucumis melo])

HSP 1 Score: 209.5 bits (532), Expect = 2.8e-51
Identity = 104/105 (99.05%), Postives = 104/105 (99.05%), Query Frame = 1

Query: 1   MRLPPRQSTAEADLMIPFQLAATKTTSEEDRYFSRVSLRMPSFGVKVKSAQGDLKEKPII 60
           MRLPPRQSTAEADLMIPFQLAATKTTSEEDRYFSRVSLRMPSFGVKVKSAQGDLKEKPII
Sbjct: 431 MRLPPRQSTAEADLMIPFQLAATKTTSEEDRYFSRVSLRMPSFGVKVKSAQGDLKEKPII 490

Query: 61  DGNPGGALSSNLSLDMSLDGWDGVSLEYYIDWPLQLFFTQEVLSK 106
           DGNPGGALSSNLSLDMS DGWDGVSLEYYIDWPLQLFFTQEVLSK
Sbjct: 491 DGNPGGALSSNLSLDMSPDGWDGVSLEYYIDWPLQLFFTQEVLSK 535

BLAST of MELO3C026911 vs. NCBI nr
Match: gi|659099014|ref|XP_008450390.1| (PREDICTED: gamma-tubulin complex component 4 homolog isoform X2 [Cucumis melo])

HSP 1 Score: 209.5 bits (532), Expect = 2.8e-51
Identity = 104/105 (99.05%), Postives = 104/105 (99.05%), Query Frame = 1

Query: 1   MRLPPRQSTAEADLMIPFQLAATKTTSEEDRYFSRVSLRMPSFGVKVKSAQGDLKEKPII 60
           MRLPPRQSTAEADLMIPFQLAATKTTSEEDRYFSRVSLRMPSFGVKVKSAQGDLKEKPII
Sbjct: 387 MRLPPRQSTAEADLMIPFQLAATKTTSEEDRYFSRVSLRMPSFGVKVKSAQGDLKEKPII 446

Query: 61  DGNPGGALSSNLSLDMSLDGWDGVSLEYYIDWPLQLFFTQEVLSK 106
           DGNPGGALSSNLSLDMS DGWDGVSLEYYIDWPLQLFFTQEVLSK
Sbjct: 447 DGNPGGALSSNLSLDMSPDGWDGVSLEYYIDWPLQLFFTQEVLSK 491

BLAST of MELO3C026911 vs. NCBI nr
Match: gi|778663742|ref|XP_011660150.1| (PREDICTED: gamma-tubulin complex component 4 homolog [Cucumis sativus])

HSP 1 Score: 204.1 bits (518), Expect = 1.2e-49
Identity = 103/105 (98.10%), Postives = 103/105 (98.10%), Query Frame = 1

Query: 1   MRLPPRQSTAEADLMIPFQLAATKTTSEEDRYFSRVSLRMPSFGVKVKSAQGDLKEKPII 60
           MRLPPRQSTAEADLMIPFQLAATKTTSEEDRYF RVSLRMPSFGVKVKSAQGDLKEKPII
Sbjct: 431 MRLPPRQSTAEADLMIPFQLAATKTTSEEDRYFCRVSLRMPSFGVKVKSAQGDLKEKPII 490

Query: 61  DGNPGGALSSNLSLDMSLDGWDGVSLEYYIDWPLQLFFTQEVLSK 106
           DGNPGGAL SNLSLDMSLDGWDGVSLEYYIDWPLQLFFTQEVLSK
Sbjct: 491 DGNPGGAL-SNLSLDMSLDGWDGVSLEYYIDWPLQLFFTQEVLSK 534

BLAST of MELO3C026911 vs. NCBI nr
Match: gi|700211412|gb|KGN66508.1| (hypothetical protein Csa_1G616260 [Cucumis sativus])

HSP 1 Score: 204.1 bits (518), Expect = 1.2e-49
Identity = 103/105 (98.10%), Postives = 103/105 (98.10%), Query Frame = 1

Query: 1   MRLPPRQSTAEADLMIPFQLAATKTTSEEDRYFSRVSLRMPSFGVKVKSAQGDLKEKPII 60
           MRLPPRQSTAEADLMIPFQLAATKTTSEEDRYF RVSLRMPSFGVKVKSAQGDLKEKPII
Sbjct: 214 MRLPPRQSTAEADLMIPFQLAATKTTSEEDRYFCRVSLRMPSFGVKVKSAQGDLKEKPII 273

Query: 61  DGNPGGALSSNLSLDMSLDGWDGVSLEYYIDWPLQLFFTQEVLSK 106
           DGNPGGAL SNLSLDMSLDGWDGVSLEYYIDWPLQLFFTQEVLSK
Sbjct: 274 DGNPGGAL-SNLSLDMSLDGWDGVSLEYYIDWPLQLFFTQEVLSK 317

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
GACP4_ARATH2.6e-3366.04Gamma-tubulin complex component 4 OS=Arabidopsis thaliana GN=GCP4 PE=2 SV=2[more]
GCP4_MEDTR7.2e-3162.62Gamma-tubulin complex component 4 homolog OS=Medicago truncatula GN=85P PE=2 SV=... [more]
Match NameE-valueIdentityDescription
A0A0A0LXP4_CUCSA8.2e-5098.10Gamma-tubulin complex component OS=Cucumis sativus GN=Csa_1G616260 PE=3 SV=1[more]
A0A067H5D9_CITSI2.0e-3576.42Gamma-tubulin complex component OS=Citrus sinensis GN=CISIN_1g004500mg PE=3 SV=1[more]
V4VW99_9ROSI2.0e-3576.42Gamma-tubulin complex component OS=Citrus clementina GN=CICLE_v10018978mg PE=3 S... [more]
A0A067HGP5_CITSI2.0e-3576.42Gamma-tubulin complex component OS=Citrus sinensis GN=CISIN_1g004500mg PE=3 SV=1[more]
B9SAS5_RICCO1.7e-3473.58Gamma-tubulin complex component OS=Ricinus communis GN=RCOM_1178380 PE=3 SV=1[more]
Match NameE-valueIdentityDescription
AT3G53760.11.5e-3466.04 GAMMA-TUBULIN COMPLEX PROTEIN 4[more]
Match NameE-valueIdentityDescription
gi|659130829|ref|XP_008465374.1|4.3e-52100.00PREDICTED: gamma-tubulin complex component 4 homolog [Cucumis melo][more]
gi|659099008|ref|XP_008450387.1|2.8e-5199.05PREDICTED: gamma-tubulin complex component 4 homolog isoform X1 [Cucumis melo][more]
gi|659099014|ref|XP_008450390.1|2.8e-5199.05PREDICTED: gamma-tubulin complex component 4 homolog isoform X2 [Cucumis melo][more]
gi|778663742|ref|XP_011660150.1|1.2e-4998.10PREDICTED: gamma-tubulin complex component 4 homolog [Cucumis sativus][more]
gi|700211412|gb|KGN66508.1|1.2e-4998.10hypothetical protein Csa_1G616260 [Cucumis sativus][more]
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR007259GCP
Vocabulary: Biological Process
TermDefinition
GO:0000226microtubule cytoskeleton organization
GO:0007020microtubule nucleation
Vocabulary: Cellular Component
TermDefinition
GO:0000922spindle pole
GO:0005815microtubule organizing center
Vocabulary: Molecular Function
TermDefinition
GO:0043015gamma-tubulin binding
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0043622 cortical microtubule organization
biological_process GO:0048449 floral organ formation
biological_process GO:0040007 growth
biological_process GO:0016570 histone modification
biological_process GO:0007020 microtubule nucleation
biological_process GO:0009909 regulation of flower development
biological_process GO:0009624 response to nematode
biological_process GO:0006364 rRNA processing
biological_process GO:0000226 microtubule cytoskeleton organization
cellular_component GO:0005815 microtubule organizing center
cellular_component GO:0009506 plasmodesma
cellular_component GO:0032040 small-subunit processome
cellular_component GO:0000922 spindle pole
cellular_component GO:0045298 tubulin complex
molecular_function GO:0043015 gamma-tubulin binding

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C026911T1MELO3C026911T1mRNA


Analysis Name: InterPro Annotations of melon
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR007259Gamma-tubulin complex component proteinPANTHERPTHR19302GAMMA TUBULIN COMPLEX PROTEINcoord: 1..105
score: 7.2
NoneNo IPR availablePANTHERPTHR19302:SF27GAMMA-TUBULIN COMPLEX COMPONENT 4coord: 1..105
score: 7.2

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None