MELO3C026819 (gene) Melon (DHL92) v3.5.1

Overview
NameMELO3C026819
Typegene
OrganismCucumis melo (Melon (DHL92) v3.5.1)
DescriptionDefective in cullin neddylation protein
Locationchr10 : 14110506 .. 14110934 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
GATGAGATCTCAAAAACTTGTGCTGATAAAGGACCGTCTCGAAACGATGTTTTGACAAAATATTTCGATTTACAAGAGAGTAGTGGACGTGTACGTGGAGTTGGTGGGTTTTTCATCCCAACTGCTTACTTCCACATAGCAAAAAACTCAAAGAAACGGAGTGAAGAAATTGAGAAGCTTAGTCAAGAGAATGAAAAGTTTCGTTTGCGAGTTCTAGAATTAAAGAATATTCACATATCAACACAATCTACACTGAAGTCTACACATGGATCTTGGTCGAGACCAAGATTGGAATACGATATACAATGTAAAAAAAATCTGGAAAAGGAGAAAATGAATGTCACAACAAAGGTGGTTAAAGAGGAGGTGAATGTGGATGTGGTTATTTTGAATGATCAACATGAGGATGCTAGGAAGGTAATTAGTTAA

mRNA sequence

GATGAGATCTCAAAAACTTGTGCTGATAAAGGACCGTCTCGAAACGATGTTTTGACAAAATATTTCGATTTACAAGAGAGTAGTGGACGTGTACGTGGAGTTGGTGGGTTTTTCATCCCAACTGCTTACTTCCACATAGCAAAAAACTCAAAGAAACGGAGTGAAGAAATTGAGAAGCTTAGTCAAGAGAATGAAAAGTTTCGTTTGCGAGTTCTAGAATTAAAGAATATTCACATATCAACACAATCTACACTGAAGTCTACACATGGATCTTGGTCGAGACCAAGATTGGAATACGATATACAATGTAAAAAAAATCTGGAAAAGGAGAAAATGAATGTCACAACAAAGGTGGTTAAAGAGGAGGTGAATGTGGATGTGGTTATTTTGAATGATCAACATGAGGATGCTAGGAAGGTAATTAGTTAA

Coding sequence (CDS)

GATGAGATCTCAAAAACTTGTGCTGATAAAGGACCGTCTCGAAACGATGTTTTGACAAAATATTTCGATTTACAAGAGAGTAGTGGACGTGTACGTGGAGTTGGTGGGTTTTTCATCCCAACTGCTTACTTCCACATAGCAAAAAACTCAAAGAAACGGAGTGAAGAAATTGAGAAGCTTAGTCAAGAGAATGAAAAGTTTCGTTTGCGAGTTCTAGAATTAAAGAATATTCACATATCAACACAATCTACACTGAAGTCTACACATGGATCTTGGTCGAGACCAAGATTGGAATACGATATACAATGTAAAAAAAATCTGGAAAAGGAGAAAATGAATGTCACAACAAAGGTGGTTAAAGAGGAGGTGAATGTGGATGTGGTTATTTTGAATGATCAACATGAGGATGCTAGGAAGGTAATTAGTTAA

Protein sequence

DEISKTCADKGPSRNDVLTKYFDLQESSGRVRGVGGFFIPTAYFHIAKNSKKRSEEIEKLSQENEKFRLRVLELKNIHISTQSTLKSTHGSWSRPRLEYDIQCKKNLEKEKMNVTTKVVKEEVNVDVVILNDQHEDARKVIS*
Homology
[Close]
BLAST of MELO3C026819 vs. NCBI nr
Match: gi|778708464|ref|XP_011656204.1| (PREDICTED: uncharacterized protein LOC105435665 [Cucumis sativus])

HSP 1 Score: 135.2 bits (339), Expect = 9.1e-29
Identity = 72/123 (58.54%), Postives = 88/123 (71.54%), Query Frame = 1 

Query: 1   DEISKTCADKGPSRNDVLTKYFDLQESSGRVRGVGGFFIPTAYFHIAKNSKKRSEEIEKL 60
           D+IS+   DK PS ND L +     E SGRVRGVGGF   TAYFH +K+SKK+SE IEKL
Sbjct: 121 DDISRIYVDKEPSPND-LAQALGTNEHSGRVRGVGGFVTRTAYFHTSKHSKKQSENIEKL 180

Query: 61  SQENEKFRLRVLELKNIHISTQSTLKSTHGSWSRPRLEYDIQCKKNLEKEKMNVTTKVVK 120
            +ENEK  L V EL++IH++TQST    H S SRPRLEYDIQ K+ L++EKMN+TTK   
Sbjct: 181 REENEKLCLGVQELESIHLTTQSTPTYAHASCSRPRLEYDIQPKEKLQEEKMNITTKDAM 240

Query: 121 EEV 124
           E +
Sbjct: 241 ERL 242

The following BLAST results are available for this feature:
BLAST of MELO3C026819 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|778708464|ref|XP_011656204.1|9.1e-2958.54PREDICTED: uncharacterized protein LOC105435665 [Cucumis sativus][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C026819T1MELO3C026819T1mRNA


InterPro
Analysis Name: InterPro Annotations of melon
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableunknownCoilCoilcoord: 50..77
score: -coord: 104..124
scor

Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
MELO3C026819Cucumber (Chinese Long) v3cucmeB372
MELO3C026819Wild cucumber (PI 183967)cpimeB372
MELO3C026819Cucumber (Gy14) v2cgybmeB312