MELO3C026798 (gene) Melon (DHL92) v3.5.1

Overview
NameMELO3C026798
Typegene
OrganismCucumis melo (Melon (DHL92) v3.5.1)
DescriptionZinc finger protein
Locationchr10 : 13971499 .. 13971873 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAATTGTGGGAAACAAAGTGGTGGGAGTCAATCAGCATCTTGGTCTTATGAGTGTACTATTTGCAAGAGGAGCTTCAAAAGTGCAAAAGCTTTAGGAGGACATATGCACATACATAGCAATGAAGAGATAGACACTAAGTTGAAGTTGCAATCAACATCGGAATCAATCCCCACGGACTTGAGATGGGTAGTCCTGTCAGCTACTGCAGAAGGTCGTGGTCGAGACCGAAACCGAGGCAAGGGCAGTAAGGAACAGGTCCGGATGGGTAAGGTAAAAGAACTCTCACTTTTCGGCAAAAAACCCTCGAATTTGAAGAAGCTGTTCGGTGAGAAGACAGGACAGTCATCTCAACAGGATAATGTTGTCTCTGAG

mRNA sequence

ATGAATTGTGGGAAACAAAGTGGTGGGAGTCAATCAGCATCTTGGTCTTATGAGTGTACTATTTGCAAGAGGAGCTTCAAAAGTGCAAAAGCTTTAGGAGGACATATGCACATACATAGCAATGAAGAGATAGACACTAAGTTGAAGTTGCAATCAACATCGGAATCAATCCCCACGGACTTGAGATGGGTAGTCCTGTCAGCTACTGCAGAAGGTCGTGGTCGAGACCGAAACCGAGGCAAGGGCAGTAAGGAACAGGTCCGGATGGGTAAGGTAAAAGAACTCTCACTTTTCGGCAAAAAACCCTCGAATTTGAAGAAGCTGTTCGGTGAGAAGACAGGACAGTCATCTCAACAGGATAATGTTGTCTCTGAG

Coding sequence (CDS)

ATGAATTGTGGGAAACAAAGTGGTGGGAGTCAATCAGCATCTTGGTCTTATGAGTGTACTATTTGCAAGAGGAGCTTCAAAAGTGCAAAAGCTTTAGGAGGACATATGCACATACATAGCAATGAAGAGATAGACACTAAGTTGAAGTTGCAATCAACATCGGAATCAATCCCCACGGACTTGAGATGGGTAGTCCTGTCAGCTACTGCAGAAGGTCGTGGTCGAGACCGAAACCGAGGCAAGGGCAGTAAGGAACAGGTCCGGATGGGTAAGGTAAAAGAACTCTCACTTTTCGGCAAAAAACCCTCGAATTTGAAGAAGCTGTTCGGTGAGAAGACAGGACAGTCATCTCAACAGGATAATGTTGTCTCTGAG

Protein sequence

MNCGKQSGGSQSASWSYECTICKRSFKSAKALGGHMHIHSNEEIDTKLKLQSTSESIPTDLRWVVLSATAEGRGRDRNRGKGSKEQVRMGKVKELSLFGKKPSNLKKLFGEKTGQSSQQDNVVSE
Homology
[Close]
BLAST of MELO3C026798 vs. Swiss-Prot
Match: SUP_ARATH (Transcriptional regulator SUPERMAN OS=Arabidopsis thaliana GN=SUP PE=1 SV=1)

HSP 1 Score: 51.6 bits (122), Expect = 7.2e-06
Identity = 24/61 (39.34%), Postives = 33/61 (54.10%), Query Frame = 1 

Query: 2  NCGKQSGGSQSASW---SYECTICKRSFKSAKALGGHMHIHSNEEIDTKLKLQSTSESIP 60
          NC +        SW   SY C+ CKR F+SA+ALGGHM++H  +    +L+   +S S P
Sbjct: 29 NCQQDHDYLLGFSWPPRSYTCSFCKREFRSAQALGGHMNVHRRDRARLRLQQSPSSSSTP 88

[Close]
BLAST of MELO3C026798 vs. TrEMBL
Match: A0A0A0KR10_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G289630 PE=4 SV=1)

HSP 1 Score: 134.0 bits (336), Expect = 1.2e-28
Identity = 79/128 (61.72%), Postives = 90/128 (70.31%), Query Frame = 1 

Query: 1   MNCGKQ-SGGSQSASWSYECTICKRSFKSAKALGGHMHIHSNEEIDTKLKLQSTSESIPT 60
           MN  KQ SGGS S SW +EC+ICK+SFKSAKALGGHM +H+  EID KLK QS+   I T
Sbjct: 1   MNLEKQKSGGSHSTSW-HECSICKKSFKSAKALGGHMRVHNTGEIDAKLK-QSSLGPIST 60

Query: 61  DLRWVVLSATAEGRGRDRNRGKGSKEQVRMGKVKELSLFGKKPSNLKKLFGEKT--GQSS 120
           DLRWVV SA AEG  RDRNRGKG        KV+EL LF +KPS LKK   ++   GQSS
Sbjct: 61  DLRWVVPSAIAEGSSRDRNRGKGK-------KVQELQLFSQKPSKLKKKQSDEKAGGQSS 119

Query: 121 QQDNVVSE 126
           Q DNV +E
Sbjct: 121 QHDNVDNE 119

[Close]
BLAST of MELO3C026798 vs. TrEMBL
Match: V7AIU7_PHAVU (Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_011G061500g PE=4 SV=1)

HSP 1 Score: 59.3 bits (142), Expect = 3.8e-06
Identity = 39/129 (30.23%), Postives = 61/129 (47.29%), Query Frame = 1 

Query: 4   GKQSGGSQSASWSYECTICKRSFKSAKALGGHMHIHSNEEIDTKLKLQSTSESIPTDLRW 63
           G+  G +   S SYEC  CKR F +A+ALGGHM+IH  ++   K +  S    +   L  
Sbjct: 18  GEDQGATHVTSRSYECNFCKRGFSNAQALGGHMNIHRKDKAKLKQQQSSNQTQVQPSLDK 77

Query: 64  VVLSATAEGRGRDRNRGK-----GSKEQVRMG---KVKELSLFGKKPSNLKKLFGEKTGQ 123
           VV        G +RN  K       +E V        ++L LF + P++ + L     GQ
Sbjct: 78  VVPPQDQTKSGEERNAPKWNWNVSQEEHVLSSGATHTRQLPLFEESPTSSETL--NPQGQ 137

Query: 124 SSQQDNVVS 125
           ++ +  ++S
Sbjct: 138 NTTEGALLS 144

[Close]
BLAST of MELO3C026798 vs. TAIR10
Match: AT3G23130.1 (AT3G23130.1 C2H2 and C2HC zinc fingers superfamily protein)

HSP 1 Score: 51.6 bits (122), Expect = 4.1e-07
Identity = 24/61 (39.34%), Postives = 33/61 (54.10%), Query Frame = 1 

Query: 2  NCGKQSGGSQSASW---SYECTICKRSFKSAKALGGHMHIHSNEEIDTKLKLQSTSESIP 60
          NC +        SW   SY C+ CKR F+SA+ALGGHM++H  +    +L+   +S S P
Sbjct: 29 NCQQDHDYLLGFSWPPRSYTCSFCKREFRSAQALGGHMNVHRRDRARLRLQQSPSSSSTP 88

[Close]
BLAST of MELO3C026798 vs. TAIR10
Match: AT5G06070.1 (AT5G06070.1 C2H2 and C2HC zinc fingers superfamily protein)

HSP 1 Score: 49.7 bits (117), Expect = 1.5e-06
Identity = 25/55 (45.45%), Postives = 31/55 (56.36%), Query Frame = 1 

Query: 5  KQSGGSQSASW---SYECTICKRSFKSAKALGGHMHIHSNEEIDTKLKLQSTSES 57
          ++ GG     W   SY C+ C R FKSA+ALGGHM++H  +    +LK QS S S
Sbjct: 40 EEYGGGGGCMWPPRSYSCSFCGREFKSAQALGGHMNVHRRDR--ARLKQQSLSPS 92

[Close]
BLAST of MELO3C026798 vs. TAIR10
Match: AT5G43540.1 (AT5G43540.1 C2H2 and C2HC zinc fingers superfamily protein)

HSP 1 Score: 47.8 bits (112), Expect = 5.9e-06
Identity = 20/39 (51.28%), Postives = 28/39 (71.79%), Query Frame = 1 

Query: 17 YECTICKRSFKSAKALGGHMHIHSNEEIDTKLKLQSTSE 56
          YECT CKR F +A+ALGGHM+IH  + ++ K K+Q+ ++
Sbjct: 35 YECTFCKRGFTNAQALGGHMNIHRRDRLN-KAKVQNDAD 72

[Close]
BLAST of MELO3C026798 vs. NCBI nr
Match: gi|659130551|ref|XP_008465230.1| (PREDICTED: transcriptional regulator TAC1-like [Cucumis melo])

HSP 1 Score: 253.8 bits (647), Expect = 1.5e-64
Identity = 125/125 (100.00%), Postives = 125/125 (100.00%), Query Frame = 1 

Query: 1   MNCGKQSGGSQSASWSYECTICKRSFKSAKALGGHMHIHSNEEIDTKLKLQSTSESIPTD 60
           MNCGKQSGGSQSASWSYECTICKRSFKSAKALGGHMHIHSNEEIDTKLKLQSTSESIPTD
Sbjct: 1   MNCGKQSGGSQSASWSYECTICKRSFKSAKALGGHMHIHSNEEIDTKLKLQSTSESIPTD 60

Query: 61  LRWVVLSATAEGRGRDRNRGKGSKEQVRMGKVKELSLFGKKPSNLKKLFGEKTGQSSQQD 120
           LRWVVLSATAEGRGRDRNRGKGSKEQVRMGKVKELSLFGKKPSNLKKLFGEKTGQSSQQD
Sbjct: 61  LRWVVLSATAEGRGRDRNRGKGSKEQVRMGKVKELSLFGKKPSNLKKLFGEKTGQSSQQD 120

Query: 121 NVVSE 126
           NVVSE
Sbjct: 121 NVVSE 125

[Close]
BLAST of MELO3C026798 vs. NCBI nr
Match: gi|449445407|ref|XP_004140464.1| (PREDICTED: probable transcriptional regulator RABBIT EARS [Cucumis sativus])

HSP 1 Score: 134.0 bits (336), Expect = 1.8e-28
Identity = 79/128 (61.72%), Postives = 90/128 (70.31%), Query Frame = 1 

Query: 1   MNCGKQ-SGGSQSASWSYECTICKRSFKSAKALGGHMHIHSNEEIDTKLKLQSTSESIPT 60
           MN  KQ SGGS S SW +EC+ICK+SFKSAKALGGHM +H+  EID KLK QS+   I T
Sbjct: 1   MNLEKQKSGGSHSTSW-HECSICKKSFKSAKALGGHMRVHNTGEIDAKLK-QSSLGPIST 60

Query: 61  DLRWVVLSATAEGRGRDRNRGKGSKEQVRMGKVKELSLFGKKPSNLKKLFGEKT--GQSS 120
           DLRWVV SA AEG  RDRNRGKG        KV+EL LF +KPS LKK   ++   GQSS
Sbjct: 61  DLRWVVPSAIAEGSSRDRNRGKGK-------KVQELQLFSQKPSKLKKKQSDEKAGGQSS 119

Query: 121 QQDNVVSE 126
           Q DNV +E
Sbjct: 121 QHDNVDNE 119

[Close]
BLAST of MELO3C026798 vs. NCBI nr
Match: gi|659115221|ref|XP_008457447.1| (PREDICTED: transcriptional regulator TAC1-like [Cucumis melo])

HSP 1 Score: 65.5 bits (158), Expect = 7.7e-08
Identity = 46/118 (38.98%), Postives = 64/118 (54.24%), Query Frame = 1 

Query: 5   KQSGGSQSASWSYECTICKRSFKSAKALGGHMHIHSNEEIDTKLKLQSTS---------- 64
           +QSG +QS + SYEC  CKR F +A+ALGGHM+IH  E+   K  + ++S          
Sbjct: 15  EQSGVNQSTARSYECNFCKRGFTNAQALGGHMNIHRKEKAKLKQSITTSSLSSSPNKMVV 74

Query: 65  -----ESIPTDLRWVVLS-ATAEGRGRDRNRGKGSKEQVRMGKVKELSLF-GKKPSNL 106
                 S PT   WVV+S +T E  GR  NR  G +E +   + ++L LF    PSN+
Sbjct: 75  DTPKMMSTPTRFPWVVISPSTREEHGRS-NR-CGLEETLISEEFQQLPLFVENNPSNI 130

[Close]
BLAST of MELO3C026798 vs. NCBI nr
Match: gi|571488554|ref|XP_006590971.1| (PREDICTED: transcriptional regulator TAC1-like [Glycine max])

HSP 1 Score: 62.0 bits (149), Expect = 8.5e-07
Identity = 37/105 (35.24%), Postives = 57/105 (54.29%), Query Frame = 1 

Query: 4   GKQSGGSQSASWSYECTICKRSFKSAKALGGHMHIHSNEEIDTKLKLQSTSESIPTDLRW 63
           G++ G S   S S+EC  C+R F +A+ALGGHM+IH  ++   KLK Q +S  I  D   
Sbjct: 21  GEEQGASHVTSRSFECNFCRRGFSNAQALGGHMNIHRKDK--AKLKQQQSSNQIQQD--- 80

Query: 64  VVLSATAEGRGRDRNRGKG----SKEQVRMGKVKELSLFGKKPSN 105
                 A+  G D N+ K     S ++  + K ++L LF + P++
Sbjct: 81  -----QAKSYGEDSNKQKWNWNVSLQEHAIHKRQQLPLFAESPTS 115

[Close]
BLAST of MELO3C026798 vs. NCBI nr
Match: gi|629121017|gb|KCW85507.1| (hypothetical protein EUGRSUZ_B02305, partial [Eucalyptus grandis])

HSP 1 Score: 59.7 bits (143), Expect = 4.2e-06
Identity = 46/138 (33.33%), Postives = 72/138 (52.17%), Query Frame = 1 

Query: 5   KQSGGSQSASWSYECTICKRSFKSAKALGGHMHIHSNEEIDTKLKLQSTSES-------- 64
           +Q G SQ  S  YEC  CKR F +A+ALGGHM+IH  ++   KLK  ST  S        
Sbjct: 10  EQQGSSQGRS--YECIFCKRGFSNAQALGGHMNIHRKDK--AKLKQSSTISSYSASSTVQ 69

Query: 65  ----IPT-DLRWVVLSATAEGRGRDRNRGKGSKEQVR------MGKVKELSLFGKKPSNL 124
               +P+ D R+   S T++      +R +G +E ++      +G V++L LF + PS+ 
Sbjct: 70  PLPQMPSLDARFTGSSDTSKVSWPWVHRREGEEESIKKDYYSHVGGVRQLPLFSEIPSST 129

The following BLAST results are available for this feature:
BLAST of MELO3C026798 vs. Swiss-Prot
Match NameE-valueIdentityDescription
SUP_ARATH7.2e-0639.34Transcriptional regulator SUPERMAN OS=Arabidopsis thaliana GN=SUP PE=1 SV=1[more]
BLAST of MELO3C026798 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KR10_CUCSA1.2e-2861.72Uncharacterized protein OS=Cucumis sativus GN=Csa_5G289630 PE=4 SV=1[more]
V7AIU7_PHAVU3.8e-0630.23Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_011G061500g PE=4 SV=1[more]
BLAST of MELO3C026798 vs. TAIR10
Match NameE-valueIdentityDescription
AT3G23130.14.1e-0739.34 C2H2 and C2HC zinc fingers superfamily protein[more]
AT5G06070.11.5e-0645.45 C2H2 and C2HC zinc fingers superfamily protein[more]
AT5G43540.15.9e-0651.28 C2H2 and C2HC zinc fingers superfamily protein[more]
BLAST of MELO3C026798 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659130551|ref|XP_008465230.1|1.5e-64100.00PREDICTED: transcriptional regulator TAC1-like [Cucumis melo][more]
gi|449445407|ref|XP_004140464.1|1.8e-2861.72PREDICTED: probable transcriptional regulator RABBIT EARS [Cucumis sativus][more]
gi|659115221|ref|XP_008457447.1|7.7e-0838.98PREDICTED: transcriptional regulator TAC1-like [Cucumis melo][more]
gi|571488554|ref|XP_006590971.1|8.5e-0735.24PREDICTED: transcriptional regulator TAC1-like [Glycine max][more]
gi|629121017|gb|KCW85507.1|4.2e-0633.33hypothetical protein EUGRSUZ_B02305, partial [Eucalyptus grandis][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR007087Zinc finger, C2H2
IPR013087Znf_C2H2_type
IPR015880Zinc finger, C2H2-like
Vocabulary: Molecular Function
TermDefinition
GO:0046872metal ion binding
GO:0003676nucleic acid binding
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0046872 metal ion binding
molecular_function GO:0003676 nucleic acid binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C026798T1MELO3C026798T1mRNA


InterPro
Analysis Name: InterPro Annotations of melon
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR007087Zinc finger, C2H2PFAMPF13912zf-C2H2_6coord: 17..36
score: 3.
IPR007087Zinc finger, C2H2PROSITEPS00028ZINC_FINGER_C2H2_1coord: 19..39
scor
IPR007087Zinc finger, C2H2PROFILEPS50157ZINC_FINGER_C2H2_2coord: 17..44
score: 11
IPR013087Zinc finger C2H2-type/integrase DNA-binding domainGENE3DG3DSA:3.30.160.60coord: 17..42
score: 4.
IPR015880Zinc finger, C2H2-likeSMARTSM00355c2h2final6coord: 17..39
score: 0.
NoneNo IPR availableunknownSSF57667beta-beta-alpha zinc fingerscoord: 16..43
score: 6.

Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
MELO3C026798Bottle gourd (USVL1VR-Ls)lsimeB283
MELO3C026798Wild cucumber (PI 183967)cpimeB372