MELO3C026793 (gene) Melon (DHL92) v3.5.1

Overview
NameMELO3C026793
Typegene
OrganismCucumis melo (Melon (DHL92) v3.5.1)
DescriptionPhosphatidylserine decarboxylase proenzyme 3
Locationchr10 : 13749017 .. 13749177 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAGACAATCAATATGACAATCAACTTCATTGAACAAATTGTAGACATACCTGGATGCCTGTATACTGTTAATCCAATTGCTGTCAATAGCAAGTATTGCAATGTCTTCACAGAGAACAAGCGTTCAGTAGCAATGGCACAACTCAATCAAGAGTTGAT

mRNA sequence

ATGGAGACAATCAATATGACAATCAACTTCATTGAACAAATTGTAGACATACCTGGATGCCTGTATACTGTTAATCCAATTGCTGTCAATAGCAAGTATTGCAATGTCTTCACAGAGAACAAGCGTTCAGTAGCAATGGCACAACTCAATCAAGAGTTGAT

Coding sequence (CDS)

ATGGAGACAATCAATATGACAATCAACTTCATTGAACAAATTGTAGACATACCTGGATGCCTGTATACTGTTAATCCAATTGCTGTCAATAGCAAGTATTGCAATGTCTTCACAGAGAACAAGCGTTCAGTAGCAATGGCACAACTCAATCAAGAGTTGAT

Protein sequence

METINMTINFIEQIVDIPGCLYTVNPIAVNSKYCNVFTENKRSVAMAQLNQEL
Homology
[Close]
BLAST of MELO3C026793 vs. Swiss-Prot
Match: PSD2_ORYSJ (Phosphatidylserine decarboxylase proenzyme 2 OS=Oryza sativa subsp. japonica GN=PSD2 PE=3 SV=3)

HSP 1 Score: 67.4 bits (163), Expect = 5.4e-11
Identity = 29/41 (70.73%), Postives = 34/41 (82.93%), Query Frame = 1 

Query: 11  IEQIVDIPGCLYTVNPIAVNSKYCNVFTENKRSVAMAQLNQ 52
           +E+ V+IPGCLYTVNPIAVNSKYCNVFTENKR V++   ++
Sbjct: 488 LEKFVEIPGCLYTVNPIAVNSKYCNVFTENKRVVSIISTSE 528

[Close]
BLAST of MELO3C026793 vs. Swiss-Prot
Match: PSD2_ARATH (Phosphatidylserine decarboxylase proenzyme 2 OS=Arabidopsis thaliana GN=PSD2 PE=2 SV=1)

HSP 1 Score: 65.9 bits (159), Expect = 1.6e-10
Identity = 30/36 (83.33%), Postives = 31/36 (86.11%), Query Frame = 1 

Query: 11  IEQIVDIPGCLYTVNPIAVNSKYCNVFTENKRSVAM 47
           IEQ VD+ G LYTVNPIAVNSKYCNVFTENKR+VA+
Sbjct: 506 IEQFVDVSGSLYTVNPIAVNSKYCNVFTENKRTVAI 541

[Close]
BLAST of MELO3C026793 vs. Swiss-Prot
Match: PSD3_ARATH (Phosphatidylserine decarboxylase proenzyme 3 OS=Arabidopsis thaliana GN=PSD3 PE=1 SV=1)

HSP 1 Score: 60.5 bits (145), Expect = 6.6e-09
Identity = 26/36 (72.22%), Postives = 30/36 (83.33%), Query Frame = 1 

Query: 11  IEQIVDIPGCLYTVNPIAVNSKYCNVFTENKRSVAM 47
           IE+ V++ G LYTVNPIAVNSKYCNVFTENKR++ +
Sbjct: 505 IEKFVNVSGSLYTVNPIAVNSKYCNVFTENKRTIVI 540

[Close]
BLAST of MELO3C026793 vs. TrEMBL
Match: A0A103YKT5_CYNCS (C2 calcium/lipid-binding domain, CaLB OS=Cynara cardunculus var. scolymus GN=Ccrd_010631 PE=4 SV=1)

HSP 1 Score: 73.6 bits (179), Expect = 8.4e-11
Identity = 33/36 (91.67%), Postives = 36/36 (100.00%), Query Frame = 1 

Query: 11  IEQIVDIPGCLYTVNPIAVNSKYCNVFTENKRSVAM 47
           IEQIVDIPGCLYTVNPIAVNSKYCNVFTENKR+V++
Sbjct: 469 IEQIVDIPGCLYTVNPIAVNSKYCNVFTENKRAVSI 504

[Close]
BLAST of MELO3C026793 vs. TrEMBL
Match: S8D2H7_9LAMI (Phosphatidylserine decarboxylase OS=Genlisea aurea GN=M569_01147 PE=4 SV=1)

HSP 1 Score: 72.0 bits (175), Expect = 2.4e-10
Identity = 32/36 (88.89%), Postives = 34/36 (94.44%), Query Frame = 1 

Query: 11 IEQIVDIPGCLYTVNPIAVNSKYCNVFTENKRSVAM 47
          IE+ VDIPGCLYTVNPIAVNSKYCNVFTENKR+V M
Sbjct: 57 IEEFVDIPGCLYTVNPIAVNSKYCNVFTENKRTVCM 92

[Close]
BLAST of MELO3C026793 vs. TrEMBL
Match: A0A103Y3F5_CYNCS (C2 calcium-dependent membrane targeting OS=Cynara cardunculus var. scolymus GN=Ccrd_019909 PE=4 SV=1)

HSP 1 Score: 71.6 bits (174), Expect = 3.2e-10
Identity = 32/36 (88.89%), Postives = 36/36 (100.00%), Query Frame = 1 

Query: 11  IEQIVDIPGCLYTVNPIAVNSKYCNVFTENKRSVAM 47
           IEQIV+IPGCLYTVNPIAVNSKYCNVFTENKR+V++
Sbjct: 534 IEQIVNIPGCLYTVNPIAVNSKYCNVFTENKRAVSI 569

[Close]
BLAST of MELO3C026793 vs. TrEMBL
Match: I3SXC8_LOTJA (Uncharacterized protein OS=Lotus japonicus PE=2 SV=1)

HSP 1 Score: 70.9 bits (172), Expect = 5.4e-10
Identity = 32/36 (88.89%), Postives = 34/36 (94.44%), Query Frame = 1 

Query: 11 IEQIVDIPGCLYTVNPIAVNSKYCNVFTENKRSVAM 47
          IEQ VDIPGCLYTVNPIAVNSKYCNVFTENKR V++
Sbjct: 32 IEQFVDIPGCLYTVNPIAVNSKYCNVFTENKRVVSI 67

[Close]
BLAST of MELO3C026793 vs. TrEMBL
Match: I3T798_LOTJA (Uncharacterized protein OS=Lotus japonicus PE=2 SV=1)

HSP 1 Score: 70.9 bits (172), Expect = 5.4e-10
Identity = 32/36 (88.89%), Postives = 34/36 (94.44%), Query Frame = 1 

Query: 11 IEQIVDIPGCLYTVNPIAVNSKYCNVFTENKRSVAM 47
          IEQ VDIPGCLYTVNPIAVNSKYCNVFTENKR V++
Sbjct: 32 IEQFVDIPGCLYTVNPIAVNSKYCNVFTENKRVVSI 67

[Close]
BLAST of MELO3C026793 vs. TAIR10
Match: AT5G57190.1 (AT5G57190.1 phosphatidylserine decarboxylase 2)

HSP 1 Score: 65.9 bits (159), Expect = 8.8e-12
Identity = 30/36 (83.33%), Postives = 31/36 (86.11%), Query Frame = 1 

Query: 11  IEQIVDIPGCLYTVNPIAVNSKYCNVFTENKRSVAM 47
           IEQ VD+ G LYTVNPIAVNSKYCNVFTENKR+VA+
Sbjct: 506 IEQFVDVSGSLYTVNPIAVNSKYCNVFTENKRTVAI 541

[Close]
BLAST of MELO3C026793 vs. TAIR10
Match: AT4G25970.1 (AT4G25970.1 phosphatidylserine decarboxylase 3)

HSP 1 Score: 60.5 bits (145), Expect = 3.7e-10
Identity = 26/36 (72.22%), Postives = 30/36 (83.33%), Query Frame = 1 

Query: 11  IEQIVDIPGCLYTVNPIAVNSKYCNVFTENKRSVAM 47
           IE+ V++ G LYTVNPIAVNSKYCNVFTENKR++ +
Sbjct: 505 IEKFVNVSGSLYTVNPIAVNSKYCNVFTENKRTIVI 540

[Close]
BLAST of MELO3C026793 vs. NCBI nr
Match: gi|778724254|ref|XP_011658767.1| (PREDICTED: phosphatidylserine decarboxylase proenzyme 2 [Cucumis sativus])

HSP 1 Score: 78.2 bits (191), Expect = 4.9e-12
Identity = 36/37 (97.30%), Postives = 37/37 (100.00%), Query Frame = 1 

Query: 10  FIEQIVDIPGCLYTVNPIAVNSKYCNVFTENKRSVAM 47
           FIEQIVDIPGCLYTVNPIAVNSKYCNVFTENKRSVA+
Sbjct: 519 FIEQIVDIPGCLYTVNPIAVNSKYCNVFTENKRSVAI 555

[Close]
BLAST of MELO3C026793 vs. NCBI nr
Match: gi|659110477|ref|XP_008455245.1| (PREDICTED: phosphatidylserine decarboxylase proenzyme 3-like [Cucumis melo])

HSP 1 Score: 78.2 bits (191), Expect = 4.9e-12
Identity = 36/37 (97.30%), Postives = 37/37 (100.00%), Query Frame = 1 

Query: 10  FIEQIVDIPGCLYTVNPIAVNSKYCNVFTENKRSVAM 47
           FIEQIVDIPGCLYTVNPIAVNSKYCNVFTENKRSVA+
Sbjct: 520 FIEQIVDIPGCLYTVNPIAVNSKYCNVFTENKRSVAI 556

[Close]
BLAST of MELO3C026793 vs. NCBI nr
Match: gi|976927159|gb|KVI10971.1| (C2 calcium/lipid-binding domain, CaLB [Cynara cardunculus var. scolymus])

HSP 1 Score: 73.6 bits (179), Expect = 1.2e-10
Identity = 33/36 (91.67%), Postives = 36/36 (100.00%), Query Frame = 1 

Query: 11  IEQIVDIPGCLYTVNPIAVNSKYCNVFTENKRSVAM 47
           IEQIVDIPGCLYTVNPIAVNSKYCNVFTENKR+V++
Sbjct: 469 IEQIVDIPGCLYTVNPIAVNSKYCNVFTENKRAVSI 504

[Close]
BLAST of MELO3C026793 vs. NCBI nr
Match: gi|527208679|gb|EPS73610.1| (phosphatidylserine decarboxylase [Genlisea aurea])

HSP 1 Score: 72.0 bits (175), Expect = 3.5e-10
Identity = 32/36 (88.89%), Postives = 34/36 (94.44%), Query Frame = 1 

Query: 11 IEQIVDIPGCLYTVNPIAVNSKYCNVFTENKRSVAM 47
          IE+ VDIPGCLYTVNPIAVNSKYCNVFTENKR+V M
Sbjct: 57 IEEFVDIPGCLYTVNPIAVNSKYCNVFTENKRTVCM 92

[Close]
BLAST of MELO3C026793 vs. NCBI nr
Match: gi|729331678|ref|XP_010536896.1| (PREDICTED: LOW QUALITY PROTEIN: phosphatidylserine decarboxylase proenzyme 3-like [Tarenaya hassleriana])

HSP 1 Score: 71.6 bits (174), Expect = 4.6e-10
Identity = 32/36 (88.89%), Postives = 35/36 (97.22%), Query Frame = 1 

Query: 11  IEQIVDIPGCLYTVNPIAVNSKYCNVFTENKRSVAM 47
           IE+ VDIPGCLYTVNPIAVNSKYCNVFTENKR+VA+
Sbjct: 491 IEKFVDIPGCLYTVNPIAVNSKYCNVFTENKRTVAI 526

The following BLAST results are available for this feature:
BLAST of MELO3C026793 vs. Swiss-Prot
Match NameE-valueIdentityDescription
PSD2_ORYSJ5.4e-1170.73Phosphatidylserine decarboxylase proenzyme 2 OS=Oryza sativa subsp. japonica GN=... [more]
PSD2_ARATH1.6e-1083.33Phosphatidylserine decarboxylase proenzyme 2 OS=Arabidopsis thaliana GN=PSD2 PE=... [more]
PSD3_ARATH6.6e-0972.22Phosphatidylserine decarboxylase proenzyme 3 OS=Arabidopsis thaliana GN=PSD3 PE=... [more]
BLAST of MELO3C026793 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A103YKT5_CYNCS8.4e-1191.67C2 calcium/lipid-binding domain, CaLB OS=Cynara cardunculus var. scolymus GN=Ccr... [more]
S8D2H7_9LAMI2.4e-1088.89Phosphatidylserine decarboxylase OS=Genlisea aurea GN=M569_01147 PE=4 SV=1[more]
A0A103Y3F5_CYNCS3.2e-1088.89C2 calcium-dependent membrane targeting OS=Cynara cardunculus var. scolymus GN=C... [more]
I3SXC8_LOTJA5.4e-1088.89Uncharacterized protein OS=Lotus japonicus PE=2 SV=1[more]
I3T798_LOTJA5.4e-1088.89Uncharacterized protein OS=Lotus japonicus PE=2 SV=1[more]
BLAST of MELO3C026793 vs. TAIR10
Match NameE-valueIdentityDescription
AT5G57190.18.8e-1283.33 phosphatidylserine decarboxylase 2[more]
AT4G25970.13.7e-1072.22 phosphatidylserine decarboxylase 3[more]
BLAST of MELO3C026793 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|778724254|ref|XP_011658767.1|4.9e-1297.30PREDICTED: phosphatidylserine decarboxylase proenzyme 2 [Cucumis sativus][more]
gi|659110477|ref|XP_008455245.1|4.9e-1297.30PREDICTED: phosphatidylserine decarboxylase proenzyme 3-like [Cucumis melo][more]
gi|976927159|gb|KVI10971.1|1.2e-1091.67C2 calcium/lipid-binding domain, CaLB [Cynara cardunculus var. scolymus][more]
gi|527208679|gb|EPS73610.1|3.5e-1088.89phosphatidylserine decarboxylase [Genlisea aurea][more]
gi|729331678|ref|XP_010536896.1|4.6e-1088.89PREDICTED: LOW QUALITY PROTEIN: phosphatidylserine decarboxylase proenzyme 3-lik... [more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0046486 glycerolipid metabolic process
biological_process GO:0006544 glycine metabolic process
biological_process GO:0006563 L-serine metabolic process
biological_process GO:0008654 phospholipid biosynthetic process
biological_process GO:0006566 threonine metabolic process
cellular_component GO:0005575 cellular_component
molecular_function GO:0005509 calcium ion binding
molecular_function GO:0004609 phosphatidylserine decarboxylase activity
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C026793T1MELO3C026793T1mRNA


Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
MELO3C026793Wax gourdmewgoB083
MELO3C026793Cucurbita maxima (Rimu)cmameB656
MELO3C026793Cucurbita moschata (Rifu)cmomeB649
MELO3C026793Wild cucumber (PI 183967)cpimeB361
MELO3C026793Cucumber (Chinese Long) v2cumeB343
MELO3C026793Watermelon (Charleston Gray)mewcgB067
MELO3C026793Watermelon (97103) v1mewmB052
MELO3C026793Cucurbita pepo (Zucchini)cpemeB381
MELO3C026793Bottle gourd (USVL1VR-Ls)lsimeB283
MELO3C026793Cucumber (Gy14) v2cgybmeB311
MELO3C026793Silver-seed gourdcarmeB0090
MELO3C026793Cucumber (Chinese Long) v3cucmeB371
MELO3C026793Watermelon (97103) v2mewmbB066