MELO3C026779 (gene) Melon (DHL92) v3.5.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C026779
Type	gene
Organism	Cucumis melo (Melon (DHL92) v3.5.1)
Description	En/Spm-like transposon protein
Location	chr5 : 5249402 .. 5249876 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAAGTGACCAACTTTCTAATGCTACGAATGATCAAGTGGTTAACAATGTTGCTACTAACCCGATTGGAACTTCACCTCCGGTAAGGTCTTCTTTTTAATTTTTAATTTCTAATACTTTATTTCTAATTTTTATAACTTGCTCATTATGCTTAATATTGCATTTTATATTTCCTTTTTGGTATAGAATATTAATAACAACAATACTCTCCGCAAGTGCACATTGCTAGATTGGGGTGGTACAGAAGAGGTGGTTTCTGAAGGTCGATGGTCCTCAAATGATCTTAATGTTACTGTTCACCATGTTCCTCTCGGTCCTCATGCTGTTAGAGTTTGGGTGGACTTGCCAAAGAAGTCGGATGCATTTTTATGGAGACCTAACTCAGAGATGACATACATTGATGATGCTGTTGGAAGCACAGTAGCATGGCCTCTTGACAAAGTTATTTTAAGTATGTACATTCTTAACTATTAA

mRNA sequence

ATGGAAAATATTAATAACAACAATACTCTCCGCAAGTGCACATTGCTAGATTGGGGTGGTACAGAAGAGGTGGTTTCTGAAGGTCGATGGTCCTCAAATGATCTTAATGTTACTGTTCACCATGTTCCTCTCGGTCCTCATGCTGTTAGAGTTTGGGTGGACTTGCCAAAGAAGTCGGATGCATTTTTATGGAGACCTAACTCAGAGATGACATACATTGATGATGCTGTTGGAAGCACAGTAGCATGGCCTCTTGACAAAGTTATTTTAAGTATGTACATTCTTAACTATTAA

Coding sequence (CDS)

ATGGAAAATATTAATAACAACAATACTCTCCGCAAGTGCACATTGCTAGATTGGGGTGGTACAGAAGAGGTGGTTTCTGAAGGTCGATGGTCCTCAAATGATCTTAATGTTACTGTTCACCATGTTCCTCTCGGTCCTCATGCTGTTAGAGTTTGGGTGGACTTGCCAAAGAAGTCGGATGCATTTTTATGGAGACCTAACTCAGAGATGACATACATTGATGATGCTGTTGGAAGCACAGTAGCATGGCCTCTTGACAAAGTTATTTTAAGTATGTACATTCTTAACTATTAA

Protein sequence

MENINNNNTLRKCTLLDWGGTEEVVSEGRWSSNDLNVTVHHVPLGPHAVRVWVDLPKKSDAFLWRPNSEMTYIDDAVGSTVAWPLDKVILSMYILNY*

Homology

[Close]

BLAST of MELO3C026779 vs. TrEMBL
Match: A0A0A0L5I2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G113900 PE=4 SV=1)

HSP 1 Score: 152.1 bits (383), Expect = 3.4e-34
Identity = 69/89 (77.53%), Postives = 77/89 (86.52%), Query Frame = 1


Query: 3    NINNNNTLRKCTLLDWGGTEEVVSEGRWSSNDLNVTVHHVPLGPHAVRVWVDLPKKSDAF 62
            +IN+NN L KC +LDW GT EVV+EGRWSSND  V VHHVPLGP AV+VWVDLPK+SDAF
Sbjct: 1161 SINDNNALPKCKMLDWCGTGEVVAEGRWSSNDPKVIVHHVPLGPQAVKVWVDLPKRSDAF 1220

Query: 63   LWRPNSEMTYIDDAVGSTVAWPLDKVILS 92
            LWRPNSEM YI DAVGS VAWPLDKV++S
Sbjct: 1221 LWRPNSEMHYIKDAVGSAVAWPLDKVVMS 1249

[Close]

BLAST of MELO3C026779 vs. TrEMBL
Match: W9RRP8_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_017777 PE=4 SV=1)

HSP 1 Score: 115.9 bits (289), Expect = 2.7e-23
Identity = 50/80 (62.50%), Postives = 65/80 (81.25%), Query Frame = 1


Query: 12  KCTLLDWGGTEEVVSEGRWSSNDLNVTVHHVPLGPHAVRVWVDLPKKSDAFLWRPNSEMT 71
           KC ++DW G+ E+V+EGR SS D    VH++PLGP+A+RVWVD+ KK DAFLWRP SEMT
Sbjct: 679 KCKIMDWTGSGEIVAEGRRSSTDPKALVHNIPLGPNAMRVWVDVVKKPDAFLWRPTSEMT 738

Query: 72  YIDDAVGSTVAWPLDKVILS 92
            I++AVG T+AWP DKVI++
Sbjct: 739 SIEEAVGCTIAWPADKVIMT 758

[Close]

BLAST of MELO3C026779 vs. TrEMBL
Match: W9SIX0_9ROSA (Anthranilate synthase component I-2 OS=Morus notabilis GN=L484_025310 PE=4 SV=1)

HSP 1 Score: 105.1 bits (261), Expect = 4.8e-20
Identity = 47/78 (60.26%), Postives = 59/78 (75.64%), Query Frame = 1


Query: 12  KCTLLDWGGTEEVVSEGRWSSNDLNVTVHHVPLGPHAVRVWVDLPKKSDAFLWRPNSEMT 71
           KC LLDW    EVV+EGR   +D    VHHVPLGP+AVR+WVD+ K+ DAFLWRP SEM+
Sbjct: 184 KCKLLDWVEIGEVVAEGRLMPSDPKDLVHHVPLGPNAVRLWVDVAKQPDAFLWRPTSEMS 243

Query: 72  YIDDAVGSTVAWPLDKVI 90
            I++A+ S VAWP DK++
Sbjct: 244 TIEEAISSNVAWPADKIL 261

[Close]

BLAST of MELO3C026779 vs. TrEMBL
Match: Q9ZUQ3_ARATH (En/Spm-like transposon protein OS=Arabidopsis thaliana GN=At2g12220 PE=4 SV=1)

HSP 1 Score: 97.1 bits (240), Expect = 1.3e-17
Identity = 42/80 (52.50%), Postives = 59/80 (73.75%), Query Frame = 1


Query: 12  KCTLLDWGGTEEVVSEGRWSSNDLNVTVHHVPLGPHAVRVWVDLPKKSDAFLWRPNSEMT 71
           KC L+D  G + VV+EGRW++ND    VH VPLG + V+VWVD+ K SD  +WRP+ E+ 
Sbjct: 702 KCKLMDITGKKRVVAEGRWATNDPKQKVHFVPLGDNVVKVWVDIVKVSDVKVWRPSDEVE 761

Query: 72  YIDDAVGSTVAWPLDKVILS 92
            ++DA+G+ +AWP DKVI+S
Sbjct: 762 IMEDALGTAIAWPEDKVIMS 781

[Close]

BLAST of MELO3C026779 vs. TrEMBL
Match: Q9ZUQ3_ARATH (En/Spm-like transposon protein OS=Arabidopsis thaliana GN=At2g12220 PE=4 SV=1)

HSP 1 Score: 75.9 bits (185), Expect = 3.1e-11
Identity = 36/85 (42.35%), Postives = 50/85 (58.82%), Query Frame = 1


Query: 6   NNNTLRKCTLLDWGGTEEVVSEGRWSSNDLNVTVHHVPLGPHAVRVWVDLPKKSDAFLWR 65
           N  T  KC L++W G E+++ EGR  S+D +  V+   LGP  ++V V+     DAFLWR
Sbjct: 515 NRRTNPKCLLVNWSGPEDIIGEGRILSSDPDDVVNDCRLGPVDLKVLVEAANTPDAFLWR 574

Query: 66  PNSEMTYIDDAVGSTVAWPLDKVIL 91
           P   M  I +AVG  +AWP  K +L
Sbjct: 575 PAPNMYTITEAVGQMIAWPASKCVL 599

HSP 2 Score: 92.0 bits (227), Expect = 4.2e-16
Identity = 40/80 (50.00%), Postives = 58/80 (72.50%), Query Frame = 1


Query: 12   KCTLLDWGGTEEVVSEGRWSSNDLNVTVHHVPLGPHAVRVWVDLPKKSDAFLWRPNSEMT 71
            KC L+D  G + V++E RW++ND    VH VPL  +AV+VWVD+ K SD  +WRP+ E+ 
Sbjct: 1352 KCKLMDITGKKRVMAERRWATNDPKQKVHFVPLDDNAVKVWVDIVKVSDVTVWRPSDEVE 1411

Query: 72   YIDDAVGSTVAWPLDKVILS 92
             ++DA+G+ +AWP DKVI+S
Sbjct: 1412 IMEDALGTAIAWPEDKVIMS 1431

[Close]

BLAST of MELO3C026779 vs. NCBI nr
Match: gi|659102534|ref|XP_008452184.1| (PREDICTED: uncharacterized protein LOC103493280 [Cucumis melo])

HSP 1 Score: 156.8 bits (395), Expect = 2.0e-35
Identity = 70/89 (78.65%), Postives = 78/89 (87.64%), Query Frame = 1


Query: 3    NINNNNTLRKCTLLDWGGTEEVVSEGRWSSNDLNVTVHHVPLGPHAVRVWVDLPKKSDAF 62
            +IN+NN LRKC +LDW GT EVV+EGRWSSND  V VHHVPLGP AVRVWVDLPK+ DAF
Sbjct: 1173 SINDNNALRKCKMLDWCGTGEVVAEGRWSSNDPKVIVHHVPLGPQAVRVWVDLPKRPDAF 1232

Query: 63   LWRPNSEMTYIDDAVGSTVAWPLDKVILS 92
            LWRPNSEMTY+ DAVGST+AWP DKVI+S
Sbjct: 1233 LWRPNSEMTYVKDAVGSTIAWPFDKVIIS 1261

[Close]

BLAST of MELO3C026779 vs. NCBI nr
Match: gi|700201166|gb|KGN56299.1| (hypothetical protein Csa_3G113900 [Cucumis sativus])

HSP 1 Score: 152.1 bits (383), Expect = 4.9e-34
Identity = 69/89 (77.53%), Postives = 77/89 (86.52%), Query Frame = 1


Query: 3    NINNNNTLRKCTLLDWGGTEEVVSEGRWSSNDLNVTVHHVPLGPHAVRVWVDLPKKSDAF 62
            +IN+NN L KC +LDW GT EVV+EGRWSSND  V VHHVPLGP AV+VWVDLPK+SDAF
Sbjct: 1161 SINDNNALPKCKMLDWCGTGEVVAEGRWSSNDPKVIVHHVPLGPQAVKVWVDLPKRSDAF 1220

Query: 63   LWRPNSEMTYIDDAVGSTVAWPLDKVILS 92
            LWRPNSEM YI DAVGS VAWPLDKV++S
Sbjct: 1221 LWRPNSEMHYIKDAVGSAVAWPLDKVVMS 1249

[Close]

BLAST of MELO3C026779 vs. NCBI nr
Match: gi|778676478|ref|XP_011650589.1| (PREDICTED: uncharacterized protein LOC101217008 isoform X1 [Cucumis sativus])

HSP 1 Score: 152.1 bits (383), Expect = 4.9e-34
Identity = 69/89 (77.53%), Postives = 77/89 (86.52%), Query Frame = 1


Query: 3    NINNNNTLRKCTLLDWGGTEEVVSEGRWSSNDLNVTVHHVPLGPHAVRVWVDLPKKSDAF 62
            +IN+NN L KC +LDW GT EVV+EGRWSSND  V VHHVPLGP AV+VWVDLPK+SDAF
Sbjct: 1157 SINDNNALPKCKMLDWCGTGEVVAEGRWSSNDPKVIVHHVPLGPQAVKVWVDLPKRSDAF 1216

Query: 63   LWRPNSEMTYIDDAVGSTVAWPLDKVILS 92
            LWRPNSEM YI DAVGS VAWPLDKV++S
Sbjct: 1217 LWRPNSEMHYIKDAVGSAVAWPLDKVVMS 1245

[Close]

BLAST of MELO3C026779 vs. NCBI nr
Match: gi|778676484|ref|XP_011650592.1| (PREDICTED: uncharacterized protein LOC101217008 isoform X3 [Cucumis sativus])

HSP 1 Score: 152.1 bits (383), Expect = 4.9e-34
Identity = 69/89 (77.53%), Postives = 77/89 (86.52%), Query Frame = 1


Query: 3    NINNNNTLRKCTLLDWGGTEEVVSEGRWSSNDLNVTVHHVPLGPHAVRVWVDLPKKSDAF 62
            +IN+NN L KC +LDW GT EVV+EGRWSSND  V VHHVPLGP AV+VWVDLPK+SDAF
Sbjct: 1128 SINDNNALPKCKMLDWCGTGEVVAEGRWSSNDPKVIVHHVPLGPQAVKVWVDLPKRSDAF 1187

Query: 63   LWRPNSEMTYIDDAVGSTVAWPLDKVILS 92
            LWRPNSEM YI DAVGS VAWPLDKV++S
Sbjct: 1188 LWRPNSEMHYIKDAVGSAVAWPLDKVVMS 1216

[Close]

BLAST of MELO3C026779 vs. NCBI nr
Match: gi|778676487|ref|XP_011650593.1| (PREDICTED: uncharacterized protein LOC101217008 isoform X4 [Cucumis sativus])

HSP 1 Score: 152.1 bits (383), Expect = 4.9e-34
Identity = 69/89 (77.53%), Postives = 77/89 (86.52%), Query Frame = 1


Query: 3    NINNNNTLRKCTLLDWGGTEEVVSEGRWSSNDLNVTVHHVPLGPHAVRVWVDLPKKSDAF 62
            +IN+NN L KC +LDW GT EVV+EGRWSSND  V VHHVPLGP AV+VWVDLPK+SDAF
Sbjct: 1114 SINDNNALPKCKMLDWCGTGEVVAEGRWSSNDPKVIVHHVPLGPQAVKVWVDLPKRSDAF 1173

Query: 63   LWRPNSEMTYIDDAVGSTVAWPLDKVILS 92
            LWRPNSEM YI DAVGS VAWPLDKV++S
Sbjct: 1174 LWRPNSEMHYIKDAVGSAVAWPLDKVVMS 1202

The following BLAST results are available for this feature:

BLAST of MELO3C026779 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L5I2_CUCSA	3.4e-34	77.53	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G113900 PE=4 SV=1	[more]
W9RRP8_9ROSA	2.7e-23	62.50	Uncharacterized protein OS=Morus notabilis GN=L484_017777 PE=4 SV=1	[more]
W9SIX0_9ROSA	4.8e-20	60.26	Anthranilate synthase component I-2 OS=Morus notabilis GN=L484_025310 PE=4 SV=1	[more]
Q9ZUQ3_ARATH	1.3e-17	52.50	En/Spm-like transposon protein OS=Arabidopsis thaliana GN=At2g12220 PE=4 SV=1	[more]
Q9ZUQ3_ARATH	3.1e-11	42.35	En/Spm-like transposon protein OS=Arabidopsis thaliana GN=At2g12220 PE=4 SV=1	[more]

BLAST of MELO3C026779 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659102534\|ref\|XP_008452184.1\|	2.0e-35	78.65	PREDICTED: uncharacterized protein LOC103493280 [Cucumis melo]	[more]
gi\|700201166\|gb\|KGN56299.1\|	4.9e-34	77.53	hypothetical protein Csa_3G113900 [Cucumis sativus]	[more]
gi\|778676478\|ref\|XP_011650589.1\|	4.9e-34	77.53	PREDICTED: uncharacterized protein LOC101217008 isoform X1 [Cucumis sativus]	[more]
gi\|778676484\|ref\|XP_011650592.1\|	4.9e-34	77.53	PREDICTED: uncharacterized protein LOC101217008 isoform X3 [Cucumis sativus]	[more]
gi\|778676487\|ref\|XP_011650593.1\|	4.9e-34	77.53	PREDICTED: uncharacterized protein LOC101217008 isoform X4 [Cucumis sativus]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR004264	Transposase_23

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C026779T1	MELO3C026779T1	mRNA

InterPro

Analysis Name: InterPro Annotations of melon
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR004264	Transposase, Tnp1/En/Spm-like	PFAM	PF03017	Transposase_23	coord: 15..77 score: 1.

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
MELO3C026779	Cucurbita moschata (Rifu)	cmomeB221
MELO3C026779	Cucurbita moschata (Rifu)	cmomeB331
MELO3C026779	Cucurbita moschata (Rifu)	cmomeB752
MELO3C026779	Cucurbita moschata (Rifu)	cmomeB828
MELO3C026779	Wild cucumber (PI 183967)	cpimeB141
MELO3C026779	Wild cucumber (PI 183967)	cpimeB226
MELO3C026779	Cucumber (Chinese Long) v2	cumeB089
MELO3C026779	Cucumber (Chinese Long) v2	cumeB169
MELO3C026779	Watermelon (Charleston Gray)	mewcgB385
MELO3C026779	Watermelon (Charleston Gray)	mewcgB388
MELO3C026779	Watermelon (Charleston Gray)	mewcgB402
MELO3C026779	Watermelon (97103) v1	mewmB410
MELO3C026779	Watermelon (97103) v1	mewmB413
MELO3C026779	Watermelon (97103) v1	mewmB430
MELO3C026779	Cucurbita pepo (Zucchini)	cpemeB137
MELO3C026779	Cucurbita pepo (Zucchini)	cpemeB310
MELO3C026779	Cucurbita pepo (Zucchini)	cpemeB578
MELO3C026779	Cucurbita pepo (Zucchini)	cpemeB804
MELO3C026779	Bottle gourd (USVL1VR-Ls)	lsimeB025
MELO3C026779	Bottle gourd (USVL1VR-Ls)	lsimeB360
MELO3C026779	Bottle gourd (USVL1VR-Ls)	lsimeB364
MELO3C026779	Cucumber (Gy14) v2	cgybmeB122
MELO3C026779	Cucumber (Gy14) v2	cgybmeB195
MELO3C026779	Silver-seed gourd	carmeB0233
MELO3C026779	Silver-seed gourd	carmeB0238
MELO3C026779	Silver-seed gourd	carmeB0939
MELO3C026779	Silver-seed gourd	carmeB1046
MELO3C026779	Cucumber (Chinese Long) v3	cucmeB143
MELO3C026779	Cucumber (Chinese Long) v3	cucmeB232
MELO3C026779	Watermelon (97103) v2	mewmbB384
MELO3C026779	Watermelon (97103) v2	mewmbB388
MELO3C026779	Watermelon (97103) v2	mewmbB403
MELO3C026779	Wax gourd	mewgoB450
MELO3C026779	Melon (DHL92) v3.5.1	memeB147
MELO3C026779	Cucumber (Gy14) v1	cgymeB434
MELO3C026779	Cucumber (Gy14) v1	cgymeB624
MELO3C026779	Cucurbita maxima (Rimu)	cmameB234
MELO3C026779	Cucurbita maxima (Rimu)	cmameB338
MELO3C026779	Cucurbita maxima (Rimu)	cmameB760
MELO3C026779	Cucurbita maxima (Rimu)	cmameB845