MELO3C026739.2 (gene) Melon (DHL92) v3.6.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C026739.2
Type	gene
Organism	Cucumis melo (Melon (DHL92) v3.6.1)
Description	phosphatidyl-N-methylethanolamine N-methyltransferase
Location	chr04 : 25323821 .. 25324186 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGAAGAGCTACTCCTCCTCTTCTTCCTCCTGGAAATCATTTTCCACAGAAAGTGGAGCGAAAATCCGGCGAGAAAATTATCAGAATGGGCATTTTGGCCGTAATTGGAGTATTGTTGCCATTTCCGTACTACTACGTCTTATGGAATCGTCCACAGTTGTGGGTGAACTTGTGCGGCAAATCGCGCGAACCCTGCAAGTTGATGGCCCAGGTCTCGGTTTTTCTCAAGTTGCTTCAGTTCCTCTCCATCATTCATGTCTCCTCCTTCTCATGGCCCCCGCCTCTATACTTCTGGCCTCTCATGGCTTTCGGACAGTTCTTGAACTTCAGGAATCTCTCTCTCTCTCTCTCTCTGATGTGCTGA

mRNA sequence

ATGAGAAGAGCTACTCCTCCTCTTCTTCCTCCTGGAAATCATTTTCCACAGAAAGTGGAGCGAAAATCCGGCGAGAAAATTATCAGAATGGGCATTTTGGCCGTAATTGGAGTATTGTTGCCATTTCCGTACTACTACGTCTTATGGAATCGTCCACAGTTGTGGGTGAACTTGTGCGGCAAATCGCGCGAACCCTGCAAGTTGATGGCCCAGGTCTCGGTTTTTCTCAAGTTGCTTCAGTTCCTCTCCATCATTCATGTCTCCTCCTTCTCATGGCCCCCGCCTCTATACTTCTGGCCTCTCATGGCTTTCGGACAGTTCTTGAACTTCAGGAATCTCTCTCTCTCTCTCTCTCTGATGTGCTGA

Coding sequence (CDS)

ATGAGAAGAGCTACTCCTCCTCTTCTTCCTCCTGGAAATCATTTTCCACAGAAAGTGGAGCGAAAATCCGGCGAGAAAATTATCAGAATGGGCATTTTGGCCGTAATTGGAGTATTGTTGCCATTTCCGTACTACTACGTCTTATGGAATCGTCCACAGTTGTGGGTGAACTTGTGCGGCAAATCGCGCGAACCCTGCAAGTTGATGGCCCAGGTCTCGGTTTTTCTCAAGTTGCTTCAGTTCCTCTCCATCATTCATGTCTCCTCCTTCTCATGGCCCCCGCCTCTATACTTCTGGCCTCTCATGGCTTTCGGACAGTTCTTGAACTTCAGGAATCTCTCTCTCTCTCTCTCTCTGATGTGCTGA

Protein sequence

MRRATPPLLPPGNHFPQKVERKSGEKIIRMGILAVIGVLLPFPYYYVLWNRPQLWVNLCGKSREPCKLMAQVSVFLKLLQFLSIIHVSSFSWPPPLYFWPLMAFGQFLNFRNLSLSLSLMC

Homology

[Close]

BLAST of MELO3C026739.2 vs. NCBI nr
Match: XP_008465151.2 (PREDICTED: phosphatidyl-N-methylethanolamine N-methyltransferase [Cucumis melo])

HSP 1 Score: 176.8 bits (447), Expect = 4.5e-41
Identity = 82/82 (100.00%), Postives = 82/82 (100.00%), Query Frame = 0


Query: 30  MGILAVIGVLLPFPYYYVLWNRPQLWVNLCGKSREPCKLMAQVSVFLKLLQFLSIIHVSS 89
           MGILAVIGVLLPFPYYYVLWNRPQLWVNLCGKSREPCKLMAQVSVFLKLLQFLSIIHVSS
Sbjct: 1   MGILAVIGVLLPFPYYYVLWNRPQLWVNLCGKSREPCKLMAQVSVFLKLLQFLSIIHVSS 60

Query: 90  FSWPPPLYFWPLMAFGQFLNFR 112
           FSWPPPLYFWPLMAFGQFLNFR
Sbjct: 61  FSWPPPLYFWPLMAFGQFLNFR 82

[Close]

BLAST of MELO3C026739.2 vs. NCBI nr
Match: XP_004137657.1 (PREDICTED: phosphatidyl-N-methylethanolamine N-methyltransferase [Cucumis sativus])

HSP 1 Score: 175.3 bits (443), Expect = 1.3e-40
Identity = 81/82 (98.78%), Postives = 81/82 (98.78%), Query Frame = 0


Query: 30  MGILAVIGVLLPFPYYYVLWNRPQLWVNLCGKSREPCKLMAQVSVFLKLLQFLSIIHVSS 89
           MGI AVIGVLLPFPYYYVLWNRPQLWVNLCGKSREPCKLMAQVSVFLKLLQFLSIIHVSS
Sbjct: 1   MGIFAVIGVLLPFPYYYVLWNRPQLWVNLCGKSREPCKLMAQVSVFLKLLQFLSIIHVSS 60

Query: 90  FSWPPPLYFWPLMAFGQFLNFR 112
           FSWPPPLYFWPLMAFGQFLNFR
Sbjct: 61  FSWPPPLYFWPLMAFGQFLNFR 82

[Close]

BLAST of MELO3C026739.2 vs. NCBI nr
Match: KGN58659.1 (hypothetical protein Csa_3G710860 [Cucumis sativus])

HSP 1 Score: 175.3 bits (443), Expect = 1.3e-40
Identity = 81/82 (98.78%), Postives = 81/82 (98.78%), Query Frame = 0


Query: 30  MGILAVIGVLLPFPYYYVLWNRPQLWVNLCGKSREPCKLMAQVSVFLKLLQFLSIIHVSS 89
           MGI AVIGVLLPFPYYYVLWNRPQLWVNLCGKSREPCKLMAQVSVFLKLLQFLSIIHVSS
Sbjct: 1   MGIFAVIGVLLPFPYYYVLWNRPQLWVNLCGKSREPCKLMAQVSVFLKLLQFLSIIHVSS 60

Query: 90  FSWPPPLYFWPLMAFGQFLNFR 112
           FSWPPPLYFWPLMAFGQFLNFR
Sbjct: 61  FSWPPPLYFWPLMAFGQFLNFR 82

[Close]

BLAST of MELO3C026739.2 vs. NCBI nr
Match: XP_022153398.1 (phosphatidyl-N-methylethanolamine N-methyltransferase [Momordica charantia])

HSP 1 Score: 161.0 bits (406), Expect = 2.5e-36
Identity = 72/82 (87.80%), Postives = 77/82 (93.90%), Query Frame = 0


Query: 30  MGILAVIGVLLPFPYYYVLWNRPQLWVNLCGKSREPCKLMAQVSVFLKLLQFLSIIHVSS 89
           MGI+A IGVLLPFP+YYVLW RPQLW N CGK REPCKLMA+VS+FLKLLQFLSI+HVSS
Sbjct: 1   MGIIAGIGVLLPFPFYYVLWTRPQLWANFCGKWREPCKLMARVSIFLKLLQFLSILHVSS 60

Query: 90  FSWPPPLYFWPLMAFGQFLNFR 112
           FSWPPPLYFWPLMAFGQFLNFR
Sbjct: 61  FSWPPPLYFWPLMAFGQFLNFR 82

[Close]

BLAST of MELO3C026739.2 vs. NCBI nr
Match: XP_023523751.1 (phosphatidyl-N-methylethanolamine N-methyltransferase [Cucurbita pepo subsp. pepo])

HSP 1 Score: 161.0 bits (406), Expect = 2.5e-36
Identity = 75/82 (91.46%), Postives = 77/82 (93.90%), Query Frame = 0


Query: 30  MGILAVIGVLLPFPYYYVLWNRPQLWVNLCGKSREPCKLMAQVSVFLKLLQFLSIIHVSS 89
           M +LAVIGVLLPFPYYYVLW RPQLWVNLCGK  EP KLMAQVSVFLKLLQFLSI+HVSS
Sbjct: 1   MDVLAVIGVLLPFPYYYVLWTRPQLWVNLCGKWCEPSKLMAQVSVFLKLLQFLSILHVSS 60

Query: 90  FSWPPPLYFWPLMAFGQFLNFR 112
           FSWPPPLYFWPLMAFGQFLNFR
Sbjct: 61  FSWPPPLYFWPLMAFGQFLNFR 82

[Close]

BLAST of MELO3C026739.2 vs. TAIR10
Match: AT1G80860.2 (phospholipid N-methyltransferase)

HSP 1 Score: 125.2 bits (313), Expect = 2.8e-29
Identity = 56/82 (68.29%), Postives = 65/82 (79.27%), Query Frame = 0


Query: 30  MGILAVIGVLLPFPYYYVLWNRPQLWVNLCGKSREPCKLMAQVSVFLKLLQFLSIIHVSS 89
           MG+LA IGVLLPFP+Y+ LW   Q WVNLCG+ R+P  +MA+VS  LK  Q LS+  V+S
Sbjct: 1   MGLLAAIGVLLPFPFYWWLWTNAQSWVNLCGRERDPSTVMARVSHVLKAAQLLSLFSVAS 60

Query: 90  FSWPPPLYFWPLMAFGQFLNFR 112
            SWPPPLYFWPLMAFGQFLNFR
Sbjct: 61  LSWPPPLYFWPLMAFGQFLNFR 82

[Close]

BLAST of MELO3C026739.2 vs. Swiss-Prot
Match: sp|Q9SAH5|PLMT_ARATH (Phosphatidyl-N-methylethanolamine N-methyltransferase OS=Arabidopsis thaliana OX=3702 GN=PLMT PE=2 SV=1)

HSP 1 Score: 125.2 bits (313), Expect = 5.0e-28
Identity = 56/82 (68.29%), Postives = 65/82 (79.27%), Query Frame = 0


Query: 30  MGILAVIGVLLPFPYYYVLWNRPQLWVNLCGKSREPCKLMAQVSVFLKLLQFLSIIHVSS 89
           MG+LA IGVLLPFP+Y+ LW   Q WVNLCG+ R+P  +MA+VS  LK  Q LS+  V+S
Sbjct: 1   MGLLAAIGVLLPFPFYWWLWTNAQSWVNLCGRERDPSTVMARVSHVLKAAQLLSLFSVAS 60

Query: 90  FSWPPPLYFWPLMAFGQFLNFR 112
            SWPPPLYFWPLMAFGQFLNFR
Sbjct: 61  LSWPPPLYFWPLMAFGQFLNFR 82

[Close]

BLAST of MELO3C026739.2 vs. TrEMBL
Match: tr|A0A1S3CPQ5|A0A1S3CPQ5_CUCME (phosphatidyl-N-methylethanolamine N-methyltransferase OS=Cucumis melo OX=3656 GN=LOC103502819 PE=4 SV=1)

HSP 1 Score: 176.8 bits (447), Expect = 3.0e-41
Identity = 82/82 (100.00%), Postives = 82/82 (100.00%), Query Frame = 0


Query: 30  MGILAVIGVLLPFPYYYVLWNRPQLWVNLCGKSREPCKLMAQVSVFLKLLQFLSIIHVSS 89
           MGILAVIGVLLPFPYYYVLWNRPQLWVNLCGKSREPCKLMAQVSVFLKLLQFLSIIHVSS
Sbjct: 1   MGILAVIGVLLPFPYYYVLWNRPQLWVNLCGKSREPCKLMAQVSVFLKLLQFLSIIHVSS 60

Query: 90  FSWPPPLYFWPLMAFGQFLNFR 112
           FSWPPPLYFWPLMAFGQFLNFR
Sbjct: 61  FSWPPPLYFWPLMAFGQFLNFR 82

[Close]

BLAST of MELO3C026739.2 vs. TrEMBL
Match: tr|A0A0A0LCJ2|A0A0A0LCJ2_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G710860 PE=4 SV=1)

HSP 1 Score: 175.3 bits (443), Expect = 8.6e-41
Identity = 81/82 (98.78%), Postives = 81/82 (98.78%), Query Frame = 0


Query: 30  MGILAVIGVLLPFPYYYVLWNRPQLWVNLCGKSREPCKLMAQVSVFLKLLQFLSIIHVSS 89
           MGI AVIGVLLPFPYYYVLWNRPQLWVNLCGKSREPCKLMAQVSVFLKLLQFLSIIHVSS
Sbjct: 1   MGIFAVIGVLLPFPYYYVLWNRPQLWVNLCGKSREPCKLMAQVSVFLKLLQFLSIIHVSS 60

Query: 90  FSWPPPLYFWPLMAFGQFLNFR 112
           FSWPPPLYFWPLMAFGQFLNFR
Sbjct: 61  FSWPPPLYFWPLMAFGQFLNFR 82

[Close]

BLAST of MELO3C026739.2 vs. TrEMBL
Match: tr|A0A1Q3BU10|A0A1Q3BU10_CEPFO (Phosphatidyl-N-methylethanolamine N-methyltransferase OS=Cephalotus follicularis OX=3775 GN=CFOL_v3_14931 PE=3 SV=1)

HSP 1 Score: 141.0 bits (354), Expect = 1.8e-30
Identity = 62/82 (75.61%), Postives = 70/82 (85.37%), Query Frame = 0


Query: 30  MGILAVIGVLLPFPYYYVLWNRPQLWVNLCGKSREPCKLMAQVSVFLKLLQFLSIIHVSS 89
           MGI+A IG+LLPFPYYYVLW  PQ W+++CGK  +P K MA VS FLKLLQFLS+  VSS
Sbjct: 23  MGIVAAIGILLPFPYYYVLWTYPQAWIDICGKGNDPSKTMAYVSHFLKLLQFLSLFSVSS 82

Query: 90  FSWPPPLYFWPLMAFGQFLNFR 112
           FSWPPPLYFWPL+AFGQFLNFR
Sbjct: 83  FSWPPPLYFWPLIAFGQFLNFR 104

[Close]

BLAST of MELO3C026739.2 vs. TrEMBL
Match: tr|A0A0D2R7K2|A0A0D2R7K2_GOSRA (Phosphatidyl-N-methylethanolamine N-methyltransferase OS=Gossypium raimondii OX=29730 GN=B456_010G136500 PE=3 SV=1)

HSP 1 Score: 140.6 bits (353), Expect = 2.3e-30
Identity = 63/82 (76.83%), Postives = 71/82 (86.59%), Query Frame = 0


Query: 30  MGILAVIGVLLPFPYYYVLWNRPQLWVNLCGKSREPCKLMAQVSVFLKLLQFLSIIHVSS 89
           MGILA IGVLLPFP+YY+LW  PQ WVNLCGK R+P K+MA VS F+KL+QF+S+  VSS
Sbjct: 1   MGILAGIGVLLPFPFYYLLWTYPQSWVNLCGKGRDPSKVMALVSHFIKLIQFVSLFSVSS 60

Query: 90  FSWPPPLYFWPLMAFGQFLNFR 112
           FSWPPPLYFWPL AFGQFLNFR
Sbjct: 61  FSWPPPLYFWPLFAFGQFLNFR 82

[Close]

BLAST of MELO3C026739.2 vs. TrEMBL
Match: tr|A0A1U8J4X2|A0A1U8J4X2_GOSHI (Phosphatidyl-N-methylethanolamine N-methyltransferase OS=Gossypium hirsutum OX=3635 GN=LOC107901686 PE=3 SV=1)

HSP 1 Score: 140.6 bits (353), Expect = 2.3e-30
Identity = 63/82 (76.83%), Postives = 71/82 (86.59%), Query Frame = 0


Query: 30  MGILAVIGVLLPFPYYYVLWNRPQLWVNLCGKSREPCKLMAQVSVFLKLLQFLSIIHVSS 89
           MGILA IGVLLPFP+YY+LW  PQ WVNLCGK R+P K+MA VS F+KL+QF+S+  VSS
Sbjct: 1   MGILAGIGVLLPFPFYYLLWTYPQSWVNLCGKGRDPSKVMALVSHFIKLIQFVSLFSVSS 60

Query: 90  FSWPPPLYFWPLMAFGQFLNFR 112
           FSWPPPLYFWPL AFGQFLNFR
Sbjct: 61  FSWPPPLYFWPLFAFGQFLNFR 82

The following BLAST results are available for this feature:

BLAST of MELO3C026739.2 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008465151.2	4.5e-41	100.00	PREDICTED: phosphatidyl-N-methylethanolamine N-methyltransferase [Cucumis melo]	[more]
XP_004137657.1	1.3e-40	98.78	PREDICTED: phosphatidyl-N-methylethanolamine N-methyltransferase [Cucumis sativu...	[more]
KGN58659.1	1.3e-40	98.78	hypothetical protein Csa_3G710860 [Cucumis sativus]	[more]
XP_022153398.1	2.5e-36	87.80	phosphatidyl-N-methylethanolamine N-methyltransferase [Momordica charantia]	[more]
XP_023523751.1	2.5e-36	91.46	phosphatidyl-N-methylethanolamine N-methyltransferase [Cucurbita pepo subsp. pep...	[more]

BLAST of MELO3C026739.2 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G80860.2	2.8e-29	68.29	phospholipid N-methyltransferase	[more]

BLAST of MELO3C026739.2 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q9SAH5\|PLMT_ARATH	5.0e-28	68.29	Phosphatidyl-N-methylethanolamine N-methyltransferase OS=Arabidopsis thaliana OX...	[more]

BLAST of MELO3C026739.2 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3CPQ5\|A0A1S3CPQ5_CUCME	3.0e-41	100.00	phosphatidyl-N-methylethanolamine N-methyltransferase OS=Cucumis melo OX=3656 GN...	[more]
tr\|A0A0A0LCJ2\|A0A0A0LCJ2_CUCSA	8.6e-41	98.78	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G710860 PE=4 SV=1	[more]
tr\|A0A1Q3BU10\|A0A1Q3BU10_CEPFO	1.8e-30	75.61	Phosphatidyl-N-methylethanolamine N-methyltransferase OS=Cephalotus follicularis...	[more]
tr\|A0A0D2R7K2\|A0A0D2R7K2_GOSRA	2.3e-30	76.83	Phosphatidyl-N-methylethanolamine N-methyltransferase OS=Gossypium raimondii OX=...	[more]
tr\|A0A1U8J4X2\|A0A1U8J4X2_GOSHI	2.3e-30	76.83	Phosphatidyl-N-methylethanolamine N-methyltransferase OS=Gossypium hirsutum OX=3...	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0032259	methylation
biological_process	GO:0006563	L-serine metabolic process
biological_process	GO:0006656	phosphatidylcholine biosynthetic process
biological_process	GO:0006644	phospholipid metabolic process
biological_process	GO:0008654	phospholipid biosynthetic process
biological_process	GO:0006566	threonine metabolic process
biological_process	GO:0006544	glycine metabolic process
cellular_component	GO:0043231	intracellular membrane-bounded organelle
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0005789	endoplasmic reticulum membrane
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0016740	transferase activity
molecular_function	GO:0008170	N-methyltransferase activity
molecular_function	GO:0008168	methyltransferase activity
molecular_function	GO:0080101	phosphatidyl-N-dimethylethanolamine N-methyltransferase activity
molecular_function	GO:0000773	phosphatidyl-N-methylethanolamine N-methyltransferase activity
molecular_function	GO:0004608	phosphatidylethanolamine N-methyltransferase activity
molecular_function	GO:0008757	S-adenosylmethionine-dependent methyltransferase activity

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C026739.2.1	MELO3C026739.2.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
MELO3C026739.2	Csa3G710860	Cucumber (Chinese Long) v2	cumedB193
MELO3C026739.2	CSPI03G30340	Wild cucumber (PI 183967)	cpimedB193
MELO3C026739.2	Cucsa.177240	Cucumber (Gy14) v1	cgymedB312
MELO3C026739.2	CmaCh01G001860	Cucurbita maxima (Rimu)	cmamedB489
MELO3C026739.2	CmoCh01G001930	Cucurbita moschata (Rifu)	cmomedB476
MELO3C026739.2	Cp4.1LG02g15250	Cucurbita pepo (Zucchini)	cpemedB615
MELO3C026739.2	CsGy3G028140	Cucumber (Gy14) v2	cgybmedB173
MELO3C026739.2	ClCG10G012930	Watermelon (Charleston Gray)	medwcgB309
MELO3C026739.2	Cla97C10G195790	Watermelon (97103) v2	medwmbB305
MELO3C026739.2	Bhi11G001251	Wax gourd	medwgoB375
MELO3C026739.2	Carg04194	Silver-seed gourd	carmedB0211
MELO3C026739.2	CsaV3_3G032790	Cucumber (Chinese Long) v3	cucmedB198

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
MELO3C026739.2	Cucumber (Gy14) v1	cgymedB311
MELO3C026739.2	Cucurbita maxima (Rimu)	cmamedB257
MELO3C026739.2	Cucurbita moschata (Rifu)	cmomedB239
MELO3C026739.2	Cucurbita moschata (Rifu)	cmomedB374
MELO3C026739.2	Cucurbita moschata (Rifu)	cmomedB473
MELO3C026739.2	Cucurbita pepo (Zucchini)	cpemedB673
MELO3C026739.2	Bottle gourd (USVL1VR-Ls)	lsimedB273
MELO3C026739.2	Watermelon (97103) v1	medwmB344
MELO3C026739.2	Silver-seed gourd	carmedB0822