MELO3C026708 (gene) Melon (DHL92) v3.5.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C026708
Type	gene
Organism	Cucumis melo (Melon (DHL92) v3.5.1)
Description	Retrotransposon protein, putative, unclassified
Location	chr4 : 21666968 .. 21667333 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGTCTGGCCAGAAAGTTAATTGGGAAAAATCAGCCTTGTGTGGTGTTAATGTTGATGAGATTGAACTGATGTCTACTGCTTCAAGTTTGGGCTGCAAGGCTGATCATCTTCCTTTATTTTACCTTGGGGTGGGTACCGAAAGCAAAGTCACATTTTGGCAACCAGTGATTGATAAAGTACACAAAAATTTAGATAAGTGGAAAAGATTTAACTTATCTAGGGGAGGAAGAGCGACATTATGCAAATCGGTTTTATCAAATCTGCCTACTTATTGCATGCCAACCTTTTTAATGCCTGAAGGGTCAGTGGCAGATCGTTGGGACAGCTCCTTGGCTTCTCGGTCCATCTCTTTTTGGCGTTAA

mRNA sequence

ATGGCGTCTGGCCAGAAAGTTAATTGGGAAAAATCAGCCTTGTGTGGTGTTAATGTTGATGAGATTGAACTGATGTCTACTGCTTCAAGTTTGGGCTGCAAGGCTGATCATCTTCCTTTATTTTACCTTGGGGTGGGTACCGAAAGCAAAGTCACATTTTGGCAACCAGTGATTGATAAAGTACACAAAAATTTAGATAAGTGGAAAAGATTTAACTTATCTAGGGGAGGAAGAGCGACATTATGCAAATCGGTTTTATCAAATCTGCCTACTTATTGCATGCCAACCTTTTTAATGCCTGAAGGGTCAGTGGCAGATCGTTGGGACAGCTCCTTGGCTTCTCGGTCCATCTCTTTTTGGCGTTAA

Coding sequence (CDS)

ATGGCGTCTGGCCAGAAAGTTAATTGGGAAAAATCAGCCTTGTGTGGTGTTAATGTTGATGAGATTGAACTGATGTCTACTGCTTCAAGTTTGGGCTGCAAGGCTGATCATCTTCCTTTATTTTACCTTGGGGTGGGTACCGAAAGCAAAGTCACATTTTGGCAACCAGTGATTGATAAAGTACACAAAAATTTAGATAAGTGGAAAAGATTTAACTTATCTAGGGGAGGAAGAGCGACATTATGCAAATCGGTTTTATCAAATCTGCCTACTTATTGCATGCCAACCTTTTTAATGCCTGAAGGGTCAGTGGCAGATCGTTGGGACAGCTCCTTGGCTTCTCGGTCCATCTCTTTTTGGCGTTAA

Protein sequence

MASGQKVNWEKSALCGVNVDEIELMSTASSLGCKADHLPLFYLGVGTESKVTFWQPVIDKVHKNLDKWKRFNLSRGGRATLCKSVLSNLPTYCMPTFLMPEGSVADRWDSSLASRSISFWR*

Homology

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BLAST of MELO3C026708 vs. TrEMBL
Match: M5XHS0_PRUPE (Uncharacterized protein (Fragment) OS=Prunus persica GN=PRUPE_ppa020085mg PE=4 SV=1)

HSP 1 Score: 95.1 bits (235), Expect = 6.2e-17
Identity = 49/106 (46.23%), Postives = 64/106 (60.38%), Query Frame = 1


Query: 3   SGQKVNWEKSALCGVNVDEIELMSTASSLGCKADHLPLFYLGV---GTESKVTFWQPVID 62
           SG K+N  KS + G+N     L + A S GC+    P+ YLG+   G    + FW PV+D
Sbjct: 693 SGMKINKAKSCILGINFSTDALNNMAGSWGCEVGCWPMVYLGLPLGGNPRALNFWNPVMD 752

Query: 63  KVHKNLDKWKRFNLSRGGRATLCKSVLSNLPTYCMPTFLMPEGSVA 106
           KV K L KWKR  LS+GGR TL ++VLS++P+Y M  F MP G  A
Sbjct: 753 KVEKRLQKWKRACLSKGGRLTLIQAVLSSIPSYYMSLFKMPIGVAA 798

[Close]

BLAST of MELO3C026708 vs. TrEMBL
Match: M5WZA0_PRUPE (Uncharacterized protein (Fragment) OS=Prunus persica GN=PRUPE_ppa020022mg PE=4 SV=1)

HSP 1 Score: 95.1 bits (235), Expect = 6.2e-17
Identity = 49/106 (46.23%), Postives = 64/106 (60.38%), Query Frame = 1


Query: 3   SGQKVNWEKSALCGVNVDEIELMSTASSLGCKADHLPLFYLGV---GTESKVTFWQPVID 62
           SG K+N  KS + G+N     L + A S GC+    P+ YLG+   G    + FW PV+D
Sbjct: 845 SGMKINKAKSCILGINFSIEALNNMAGSWGCEVGCWPMVYLGLPLEGNPRALNFWNPVVD 904

Query: 63  KVHKNLDKWKRFNLSRGGRATLCKSVLSNLPTYCMPTFLMPEGSVA 106
           KV K L KWKR  LS+GGR TL ++VLS++P+Y M  F MP G  A
Sbjct: 905 KVEKRLQKWKRACLSKGGRLTLIQAVLSSIPSYYMSLFKMPIGVAA 950

[Close]

BLAST of MELO3C026708 vs. TrEMBL
Match: M5WKV4_PRUPE (Uncharacterized protein (Fragment) OS=Prunus persica GN=PRUPE_ppa015607mg PE=4 SV=1)

HSP 1 Score: 95.1 bits (235), Expect = 6.2e-17
Identity = 49/106 (46.23%), Postives = 64/106 (60.38%), Query Frame = 1


Query: 3   SGQKVNWEKSALCGVNVDEIELMSTASSLGCKADHLPLFYLGV---GTESKVTFWQPVID 62
           SG K+N  KS + G+N     L + A S GC+    P+ YLG+   G    + FW PV+D
Sbjct: 457 SGMKINKAKSCILGINFSTDALNNMAGSWGCEVGCWPMVYLGLPLGGNPRALNFWNPVMD 516

Query: 63  KVHKNLDKWKRFNLSRGGRATLCKSVLSNLPTYCMPTFLMPEGSVA 106
           KV K L KWKR  LS+GGR TL ++VLS++P+Y M  F MP G  A
Sbjct: 517 KVEKRLQKWKRACLSKGGRLTLIQAVLSSIPSYYMSLFKMPIGVAA 562

[Close]

BLAST of MELO3C026708 vs. TrEMBL
Match: M5VS59_PRUPE (Uncharacterized protein (Fragment) OS=Prunus persica GN=PRUPE_ppa016504mg PE=4 SV=1)

HSP 1 Score: 95.1 bits (235), Expect = 6.2e-17
Identity = 49/106 (46.23%), Postives = 64/106 (60.38%), Query Frame = 1


Query: 3   SGQKVNWEKSALCGVNVDEIELMSTASSLGCKADHLPLFYLGV---GTESKVTFWQPVID 62
           SG K+N  KS + G+N     L + A S GC+    P+ YLG+   G    + FW PV+D
Sbjct: 701 SGMKINKAKSCILGINFSTEALNNMAGSWGCEVGCWPMVYLGLPLGGNPRALNFWNPVMD 760

Query: 63  KVHKNLDKWKRFNLSRGGRATLCKSVLSNLPTYCMPTFLMPEGSVA 106
           KV K L KWKR  LS+GGR TL ++VLS++P+Y M  F MP G  A
Sbjct: 761 KVEKRLQKWKRACLSKGGRLTLIQAVLSSIPSYYMSLFKMPIGVAA 806

[Close]

BLAST of MELO3C026708 vs. TrEMBL
Match: F4NCL6_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris PE=4 SV=1)

HSP 1 Score: 94.0 bits (232), Expect = 1.4e-16
Identity = 48/107 (44.86%), Postives = 67/107 (62.62%), Query Frame = 1


Query: 1   MASGQKVNWEKSALCGVNVDEIELMSTASSLGCKADHLPLFYLGV---GTESKVTFWQPV 60
           ++SG K+N+ KS L G+NV +  +   A +L CK    P+ YLG+   G+ SK++FW P+
Sbjct: 705 LSSGLKINFHKSELLGINVPQDWMQRAAKNLCCKVGSFPITYLGMPVGGSCSKLSFWDPL 764

Query: 61  IDKVHKNLDKWKRFNLSRGGRATLCKSVLSNLPTYCMPTFLMPEGSV 105
           I+K+ K L  WK   LS GGR TL K+ L NLP Y M  F MP+G +
Sbjct: 765 IEKISKKLSLWKGNLLSLGGRLTLIKASLLNLPIYYMSLFPMPQGVI 811

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BLAST of MELO3C026708 vs. NCBI nr
Match: gi|731368551|ref|XP_010696208.1| (PREDICTED: uncharacterized protein LOC104908756 [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 97.1 bits (240), Expect = 2.3e-17
Identity = 51/108 (47.22%), Postives = 69/108 (63.89%), Query Frame = 1


Query: 1   MASGQKVNWEKSALCGVNVDEIELMSTASSLGCKADHLPLFYLGV---GTESKVTFWQPV 60
           +ASG  VN+ KSAL G+NVD+I L S A +L C+   LP  YLG+   G  S++  W P+
Sbjct: 490 IASGLSVNFHKSALYGINVDQIWLESAAKALLCRTGSLPFKYLGLPIGGNYSRIDTWNPI 549

Query: 61  IDKVHKNLDKWKRFNLSRGGRATLCKSVLSNLPTYCMPTFLMPEGSVA 106
           +D++ K L  WK   LS GGR TL K+ LS+LP Y M  F +P+G +A
Sbjct: 550 VDRMSKRLASWKGKMLSIGGRITLIKASLSSLPLYFMSLFPIPKGVIA 597

[Close]

BLAST of MELO3C026708 vs. NCBI nr
Match: gi|595974601|ref|XP_007217780.1| (hypothetical protein PRUPE_ppa020022mg, partial [Prunus persica])

HSP 1 Score: 95.1 bits (235), Expect = 8.9e-17
Identity = 49/106 (46.23%), Postives = 64/106 (60.38%), Query Frame = 1


Query: 3   SGQKVNWEKSALCGVNVDEIELMSTASSLGCKADHLPLFYLGV---GTESKVTFWQPVID 62
           SG K+N  KS + G+N     L + A S GC+    P+ YLG+   G    + FW PV+D
Sbjct: 845 SGMKINKAKSCILGINFSIEALNNMAGSWGCEVGCWPMVYLGLPLEGNPRALNFWNPVVD 904

Query: 63  KVHKNLDKWKRFNLSRGGRATLCKSVLSNLPTYCMPTFLMPEGSVA 106
           KV K L KWKR  LS+GGR TL ++VLS++P+Y M  F MP G  A
Sbjct: 905 KVEKRLQKWKRACLSKGGRLTLIQAVLSSIPSYYMSLFKMPIGVAA 950

[Close]

BLAST of MELO3C026708 vs. NCBI nr
Match: gi|595831294|ref|XP_007206246.1| (hypothetical protein PRUPE_ppa015607mg, partial [Prunus persica])

HSP 1 Score: 95.1 bits (235), Expect = 8.9e-17
Identity = 49/106 (46.23%), Postives = 64/106 (60.38%), Query Frame = 1


Query: 3   SGQKVNWEKSALCGVNVDEIELMSTASSLGCKADHLPLFYLGV---GTESKVTFWQPVID 62
           SG K+N  KS + G+N     L + A S GC+    P+ YLG+   G    + FW PV+D
Sbjct: 457 SGMKINKAKSCILGINFSTDALNNMAGSWGCEVGCWPMVYLGLPLGGNPRALNFWNPVMD 516

Query: 63  KVHKNLDKWKRFNLSRGGRATLCKSVLSNLPTYCMPTFLMPEGSVA 106
           KV K L KWKR  LS+GGR TL ++VLS++P+Y M  F MP G  A
Sbjct: 517 KVEKRLQKWKRACLSKGGRLTLIQAVLSSIPSYYMSLFKMPIGVAA 562

[Close]

BLAST of MELO3C026708 vs. NCBI nr
Match: gi|596230697|ref|XP_007224290.1| (hypothetical protein PRUPE_ppa020085mg, partial [Prunus persica])

HSP 1 Score: 95.1 bits (235), Expect = 8.9e-17
Identity = 49/106 (46.23%), Postives = 64/106 (60.38%), Query Frame = 1


Query: 3   SGQKVNWEKSALCGVNVDEIELMSTASSLGCKADHLPLFYLGV---GTESKVTFWQPVID 62
           SG K+N  KS + G+N     L + A S GC+    P+ YLG+   G    + FW PV+D
Sbjct: 693 SGMKINKAKSCILGINFSTDALNNMAGSWGCEVGCWPMVYLGLPLGGNPRALNFWNPVMD 752

Query: 63  KVHKNLDKWKRFNLSRGGRATLCKSVLSNLPTYCMPTFLMPEGSVA 106
           KV K L KWKR  LS+GGR TL ++VLS++P+Y M  F MP G  A
Sbjct: 753 KVEKRLQKWKRACLSKGGRLTLIQAVLSSIPSYYMSLFKMPIGVAA 798

[Close]

BLAST of MELO3C026708 vs. NCBI nr
Match: gi|595809689|ref|XP_007202950.1| (hypothetical protein PRUPE_ppa016504mg, partial [Prunus persica])

HSP 1 Score: 95.1 bits (235), Expect = 8.9e-17
Identity = 49/106 (46.23%), Postives = 64/106 (60.38%), Query Frame = 1


Query: 3   SGQKVNWEKSALCGVNVDEIELMSTASSLGCKADHLPLFYLGV---GTESKVTFWQPVID 62
           SG K+N  KS + G+N     L + A S GC+    P+ YLG+   G    + FW PV+D
Sbjct: 701 SGMKINKAKSCILGINFSTEALNNMAGSWGCEVGCWPMVYLGLPLGGNPRALNFWNPVMD 760

Query: 63  KVHKNLDKWKRFNLSRGGRATLCKSVLSNLPTYCMPTFLMPEGSVA 106
           KV K L KWKR  LS+GGR TL ++VLS++P+Y M  F MP G  A
Sbjct: 761 KVEKRLQKWKRACLSKGGRLTLIQAVLSSIPSYYMSLFKMPIGVAA 806

The following BLAST results are available for this feature:

BLAST of MELO3C026708 vs. TrEMBL


Match Name	E-value	Identity	Description
M5XHS0_PRUPE	6.2e-17	46.23	Uncharacterized protein (Fragment) OS=Prunus persica GN=PRUPE_ppa020085mg PE=4 S...	[more]
M5WZA0_PRUPE	6.2e-17	46.23	Uncharacterized protein (Fragment) OS=Prunus persica GN=PRUPE_ppa020022mg PE=4 S...	[more]
M5WKV4_PRUPE	6.2e-17	46.23	Uncharacterized protein (Fragment) OS=Prunus persica GN=PRUPE_ppa015607mg PE=4 S...	[more]
M5VS59_PRUPE	6.2e-17	46.23	Uncharacterized protein (Fragment) OS=Prunus persica GN=PRUPE_ppa016504mg PE=4 S...	[more]
F4NCL6_BETVU	1.4e-16	44.86	Uncharacterized protein OS=Beta vulgaris subsp. vulgaris PE=4 SV=1	[more]

BLAST of MELO3C026708 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|731368551\|ref\|XP_010696208.1\|	2.3e-17	47.22	PREDICTED: uncharacterized protein LOC104908756 [Beta vulgaris subsp. vulgaris]	[more]
gi\|595974601\|ref\|XP_007217780.1\|	8.9e-17	46.23	hypothetical protein PRUPE_ppa020022mg, partial [Prunus persica]	[more]
gi\|595831294\|ref\|XP_007206246.1\|	8.9e-17	46.23	hypothetical protein PRUPE_ppa015607mg, partial [Prunus persica]	[more]
gi\|596230697\|ref\|XP_007224290.1\|	8.9e-17	46.23	hypothetical protein PRUPE_ppa020085mg, partial [Prunus persica]	[more]
gi\|595809689\|ref\|XP_007202950.1\|	8.9e-17	46.23	hypothetical protein PRUPE_ppa016504mg, partial [Prunus persica]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function
molecular_function	GO:0008270	zinc ion binding

Unigene

This gene is associated with the following unigenes:


Unigene Name	Analysis Name	Sequence type in Unigene
MU43761	melon EST collection version 4.0	transcribed_cluster
MU43972	melon EST collection version 4.0	transcribed_cluster
MU50400	melon EST collection version 4.0	transcribed_cluster
MU60099	melon EST collection version 4.0	transcribed_cluster
MU61079	melon EST collection version 4.0	transcribed_cluster

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C026708T1	MELO3C026708T1	mRNA

The following transcribed_cluster feature(s) are associated with this gene:


Feature Name	Unique Name	Type
MU43761	MU43761	transcribed_cluster
MU43972	MU43972	transcribed_cluster
MU61079	MU61079	transcribed_cluster
MU50400	MU50400	transcribed_cluster
MU60099	MU60099	transcribed_cluster

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
MELO3C026708	Wax gourd	mewgoB395
MELO3C026708	Cucumber (Gy14) v1	cgymeB251
MELO3C026708	Wild cucumber (PI 183967)	cpimeB200
MELO3C026708	Cucumber (Chinese Long) v2	cumeB168
MELO3C026708	Watermelon (Charleston Gray)	mewcgB348
MELO3C026708	Watermelon (Charleston Gray)	mewcgB350
MELO3C026708	Bottle gourd (USVL1VR-Ls)	lsimeB441
MELO3C026708	Cucumber (Gy14) v2	cgybmeB173
MELO3C026708	Cucumber (Chinese Long) v3	cucmeB206
MELO3C026708	Watermelon (97103) v2	mewmbB351