MELO3C026680.2 (gene) Melon (DHL92) v3.6.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C026680.2
Type	gene
Organism	Cucumis melo (Melon (DHL92) v3.6.1)
Description	Unknown protein
Location	chr10 : 26389953 .. 26390192 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAAAACAAGGTTAGCAGGGAGTTGGCTCCATCCCATGTTCGTCGGAAACCCCATCCCCAGGTCTTAAAGTCGCCGGAGAAGCACAGAACAGCCATTAGTGAAGTTGAAGAAGTCAAAAAGTTAAATTTAATGAAGACAAAGAAAGATTCGACCAGGCCAAAACTATCGCCCAATAAGAAATCAAAAGTAGTTGAGAAGACATCTTCAAGGAGGACAGAGAAAGGAATGGACAATTAA

mRNA sequence

ATGGAAAACAAGGTTAGCAGGGAGTTGGCTCCATCCCATGTTCGTCGGAAACCCCATCCCCAGGTCTTAAAGTCGCCGGAGAAGCACAGAACAGCCATTAGTGAAGTTGAAGAAGTCAAAAAGTTAAATTTAATGAAGACAAAGAAAGATTCGACCAGGCCAAAACTATCGCCCAATAAGAAATCAAAAGTAGTTGAGAAGACATCTTCAAGGAGGACAGAGAAAGGAATGGACAATTAA

Coding sequence (CDS)

ATGGAAAACAAGGTTAGCAGGGAGTTGGCTCCATCCCATGTTCGTCGGAAACCCCATCCCCAGGTCTTAAAGTCGCCGGAGAAGCACAGAACAGCCATTAGTGAAGTTGAAGAAGTCAAAAAGTTAAATTTAATGAAGACAAAGAAAGATTCGACCAGGCCAAAACTATCGCCCAATAAGAAATCAAAAGTAGTTGAGAAGACATCTTCAAGGAGGACAGAGAAAGGAATGGACAATTAA

Protein sequence

MENKVSRELAPSHVRRKPHPQVLKSPEKHRTAISEVEEVKKLNLMKTKKDSTRPKLSPNKKSKVVEKTSSRRTEKGMDN

Homology

[Close]

BLAST of MELO3C026680.2 vs. NCBI nr
Match: KGN66796.1 (hypothetical protein Csa_1G690330 [Cucumis sativus])

HSP 1 Score: 81.3 bits (199), Expect = 1.7e-12
Identity = 47/75 (62.67%), Postives = 56/75 (74.67%), Query Frame = 0


Query: 1   MENKVSRELAPSHVRRKPHPQVLKSPEKHRTAISEVEEVKKLNLMKTKKDSTRPKLSPNK 60
           ME +V RELA SHV RK HPQV K PEKH+TAIS+ EE+++ NLMKT+K S +PKL PNK
Sbjct: 87  MEKEVCRELASSHVCRKSHPQVSKFPEKHKTAISDDEEIERSNLMKTEKVSVKPKLLPNK 146

Query: 61  KSKVVEKTSSRRTEK 76
           KSK VEK      E+
Sbjct: 147 KSKEVEKVFKEDRER 161

[Close]

BLAST of MELO3C026680.2 vs. TrEMBL
Match: tr|A0A0A0M3I8|A0A0A0M3I8_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G690330 PE=4 SV=1)

HSP 1 Score: 81.3 bits (199), Expect = 1.1e-12
Identity = 47/75 (62.67%), Postives = 56/75 (74.67%), Query Frame = 0


Query: 1   MENKVSRELAPSHVRRKPHPQVLKSPEKHRTAISEVEEVKKLNLMKTKKDSTRPKLSPNK 60
           ME +V RELA SHV RK HPQV K PEKH+TAIS+ EE+++ NLMKT+K S +PKL PNK
Sbjct: 87  MEKEVCRELASSHVCRKSHPQVSKFPEKHKTAISDDEEIERSNLMKTEKVSVKPKLLPNK 146

Query: 61  KSKVVEKTSSRRTEK 76
           KSK VEK      E+
Sbjct: 147 KSKEVEKVFKEDRER 161

The following BLAST results are available for this feature:

BLAST of MELO3C026680.2 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN66796.1	1.7e-12	62.67	hypothetical protein Csa_1G690330 [Cucumis sativus]	[more]

BLAST of MELO3C026680.2 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of MELO3C026680.2 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of MELO3C026680.2 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0M3I8\|A0A0A0M3I8_CUCSA	1.1e-12	62.67	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G690330 PE=4 SV=1	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C026680.2.1	MELO3C026680.2.1	mRNA

InterPro

Analysis Name: InterPro Annotations of melon v3.6.1
Date Performed: 2018-09-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..79

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
MELO3C026680.2	Cucumber (Gy14) v2	cgybmedB315
MELO3C026680.2	Wild cucumber (PI 183967)	cpimedB358
MELO3C026680.2	Cucumber (Gy14) v1	cgymedB542
MELO3C026680.2	Cucumber (Chinese Long) v2	cumedB354
MELO3C026680.2	Cucumber (Chinese Long) v3	cucmedB368