MELO3C026655.2 (gene) Melon (DHL92) v3.6.1

Overview
NameMELO3C026655.2
Typegene
OrganismCucumis melo (Melon (DHL92) v3.6.1)
DescriptionATP synthase subunit alpha
Locationchr04 : 21968557 .. 21968739 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCACAATTAGTTCAAATTCTTGCAAAAGGGAATGCTTTGGAATATTCCATTCTTGTAGTCGCCACCGCTTCGGATCCTGCGCCTCAATTTATGGCCTCATATTCTTCATGTGTCATGGGGGAATACTTCCACAATAATGGAATGCACACATTAATAATCTATGATGATGTTAGTAAACAG

mRNA sequence

ATGGCACAATTAGTTCAAATTCTTGCAAAAGGGAATGCTTTGGAATATTCCATTCTTGTAGTCGCCACCGCTTCGGATCCTGCGCCTCAATTTATGGCCTCATATTCTTCATGTGTCATGGGGGAATACTTCCACAATAATGGAATGCACACATTAATAATCTATGATGATGTTAGTAAACAG

Coding sequence (CDS)

ATGGCACAATTAGTTCAAATTCTTGCAAAAGGGAATGCTTTGGAATATTCCATTCTTGTAGTCGCCACCGCTTCGGATCCTGCGCCTCAATTTATGGCCTCATATTCTTCATGTGTCATGGGGGAATACTTCCACAATAATGGAATGCACACATTAATAATCTATGATGATGTTAGTAAACAG

Protein sequence

MAQLVQILAKGNALEYSILVVATASDPAPQFMASYSSCVMGEYFHNNGMHTLIIYDDVSKQ
Homology
[Close]
BLAST of MELO3C026655.2 vs. NCBI nr
Match: AEN56129.1 (ATPase subunit 1 (mitochondrion) [Cucumis melo subsp. melo])

HSP 1 Score: 99.0 bits (245), Expect = 6.0e-18
Identity = 50/62 (80.65%), Postives = 55/62 (88.71%), Query Frame = 0 

Query: 1   MAQLVQILAKGNALEYSILVVATASDPAP-QFMASYSSCVMGEYFHNNGMHTLIIYDDVS 60
           +AQLVQILA+GNALEYSILV ATASDPAP QF+A YS C MGEYF +NGMH LIIYDD+S
Sbjct: 218 VAQLVQILAEGNALEYSILVAATASDPAPLQFLAPYSGCAMGEYFRDNGMHALIIYDDLS 277

Query: 61  KQ 62
           KQ
Sbjct: 278 KQ 279

[Close]
BLAST of MELO3C026655.2 vs. NCBI nr
Match: PRQ15600.1 (putative H(+)-transporting two-sector ATPase (mitochondrion) [Rosa chinensis])

HSP 1 Score: 98.2 bits (243), Expect = 1.0e-17
Identity = 49/62 (79.03%), Postives = 55/62 (88.71%), Query Frame = 0 

Query: 1   MAQLVQILAKGNALEYSILVVATASDPAP-QFMASYSSCVMGEYFHNNGMHTLIIYDDVS 60
           +AQLVQIL++GNA+EYSILV ATASDPAP QFMA YS C MGEYF +NGMH LIIYDD+S
Sbjct: 216 VAQLVQILSEGNAMEYSILVAATASDPAPLQFMAPYSGCAMGEYFRDNGMHALIIYDDLS 275

Query: 61  KQ 62
           KQ
Sbjct: 276 KQ 277

[Close]
BLAST of MELO3C026655.2 vs. NCBI nr
Match: AAF16978.1 (ATPase alpha subunit, partial (mitochondrion) [Cocculus trilobus])

HSP 1 Score: 97.8 bits (242), Expect = 1.3e-17
Identity = 49/62 (79.03%), Postives = 55/62 (88.71%), Query Frame = 0 

Query: 1   MAQLVQILAKGNALEYSILVVATASDPAP-QFMASYSSCVMGEYFHNNGMHTLIIYDDVS 60
           +AQLVQIL++GNALEYSILV ATASDPAP QF+A YS C MGEYF +NGMH LIIYDD+S
Sbjct: 186 VAQLVQILSEGNALEYSILVAATASDPAPLQFLAPYSGCAMGEYFRDNGMHALIIYDDLS 245

Query: 61  KQ 62
           KQ
Sbjct: 246 KQ 247

[Close]
BLAST of MELO3C026655.2 vs. NCBI nr
Match: AAF16977.1 (ATPase alpha subunit, partial (mitochondrion) [Cissampelos pareira])

HSP 1 Score: 97.8 bits (242), Expect = 1.3e-17
Identity = 49/62 (79.03%), Postives = 55/62 (88.71%), Query Frame = 0 

Query: 1   MAQLVQILAKGNALEYSILVVATASDPAP-QFMASYSSCVMGEYFHNNGMHTLIIYDDVS 60
           +AQLVQIL++GNALEYSILV ATASDPAP QF+A YS C MGEYF +NGMH LIIYDD+S
Sbjct: 187 VAQLVQILSEGNALEYSILVAATASDPAPLQFLAPYSGCAMGEYFRDNGMHALIIYDDLS 246

Query: 61  KQ 62
           KQ
Sbjct: 247 KQ 248

[Close]
BLAST of MELO3C026655.2 vs. NCBI nr
Match: AAV66507.1 (F1-ATPase alpha subunit, partial (mitochondrion) [Plantago rigida])

HSP 1 Score: 97.8 bits (242), Expect = 1.3e-17
Identity = 49/62 (79.03%), Postives = 55/62 (88.71%), Query Frame = 0 

Query: 1   MAQLVQILAKGNALEYSILVVATASDPAP-QFMASYSSCVMGEYFHNNGMHTLIIYDDVS 60
           +AQLVQILA+GNALEYSILV ATASDPAP QF+A YS C MGEYF +NGMH LIIYDD++
Sbjct: 71  VAQLVQILAEGNALEYSILVAATASDPAPNQFLAPYSGCAMGEYFRDNGMHALIIYDDLT 130

Query: 61  KQ 62
           KQ
Sbjct: 131 KQ 132

[Close]
BLAST of MELO3C026655.2 vs. TAIR10
Match: AT2G07698.1 (ATPase, F1 complex, alpha subunit protein)

HSP 1 Score: 90.9 bits (224), Expect = 2.9e-19
Identity = 45/62 (72.58%), Postives = 51/62 (82.26%), Query Frame = 0 

Query: 1   MAQLVQILAKGNALEYSILVVATASDPAP-QFMASYSSCVMGEYFHNNGMHTLIIYDDVS 60
           + QL+Q L + NALEYSILV ATASDPAP QF+A YS C MGEYF +NGMH LIIYDD+S
Sbjct: 486 VGQLIQTLEEANALEYSILVAATASDPAPLQFLAPYSGCAMGEYFRDNGMHALIIYDDLS 545

Query: 61  KQ 62
           KQ
Sbjct: 546 KQ 547

[Close]
BLAST of MELO3C026655.2 vs. TAIR10
Match: ATMG01190.1 (ATP synthase subunit 1)

HSP 1 Score: 90.9 bits (224), Expect = 2.9e-19
Identity = 45/62 (72.58%), Postives = 51/62 (82.26%), Query Frame = 0 

Query: 1   MAQLVQILAKGNALEYSILVVATASDPAP-QFMASYSSCVMGEYFHNNGMHTLIIYDDVS 60
           + QL+Q L + NALEYSILV ATASDPAP QF+A YS C MGEYF +NGMH LIIYDD+S
Sbjct: 216 VGQLIQTLEEANALEYSILVAATASDPAPLQFLAPYSGCAMGEYFRDNGMHALIIYDDLS 275

Query: 61  KQ 62
           KQ
Sbjct: 276 KQ 277

[Close]
BLAST of MELO3C026655.2 vs. TAIR10
Match: ATCG00120.1 (ATP synthase subunit alpha)

HSP 1 Score: 57.4 bits (137), Expect = 3.6e-09
Identity = 30/62 (48.39%), Postives = 41/62 (66.13%), Query Frame = 0 

Query: 1   MAQLVQILAKGNALEYSILVVATASDPAP-QFMASYSSCVMGEYFHNNGMHTLIIYDDVS 60
           +AQ+V  L +  A+EY+I+V  TA  PA  Q++A Y+   + EYF     HTLIIYDD+S
Sbjct: 206 VAQVVTSLQERGAMEYTIVVAETADSPATLQYLAPYTGAALAEYFMYREQHTLIIYDDLS 265

Query: 61  KQ 62
           KQ
Sbjct: 266 KQ 267

[Close]
BLAST of MELO3C026655.2 vs. Swiss-Prot
Match: sp|P05492|ATPAM_OENBI (ATP synthase subunit alpha, mitochondrial OS=Oenothera biennis OX=3942 GN=ATPA PE=3 SV=1)

HSP 1 Score: 97.8 bits (242), Expect = 4.3e-20
Identity = 49/62 (79.03%), Postives = 55/62 (88.71%), Query Frame = 0 

Query: 1   MAQLVQILAKGNALEYSILVVATASDPAP-QFMASYSSCVMGEYFHNNGMHTLIIYDDVS 60
           +AQLVQIL++GNALEYSILV ATASDPAP QF+A YS C MGEYF +NGMH LIIYDD+S
Sbjct: 216 VAQLVQILSEGNALEYSILVAATASDPAPLQFLAPYSGCAMGEYFRDNGMHALIIYDDLS 275

Query: 61  KQ 62
           KQ
Sbjct: 276 KQ 277

[Close]
BLAST of MELO3C026655.2 vs. Swiss-Prot
Match: sp|Q06735|ATPAM_BETVU (ATP synthase subunit alpha, mitochondrial OS=Beta vulgaris OX=161934 GN=ATPA PE=3 SV=1)

HSP 1 Score: 95.5 bits (236), Expect = 2.2e-19
Identity = 48/62 (77.42%), Postives = 54/62 (87.10%), Query Frame = 0 

Query: 1   MAQLVQILAKGNALEYSILVVATASDPAP-QFMASYSSCVMGEYFHNNGMHTLIIYDDVS 60
           +AQLVQIL++ NALEYSILV ATASDPAP QF+A YS C MGEYF +NGMH LIIYDD+S
Sbjct: 216 VAQLVQILSEANALEYSILVAATASDPAPLQFLAPYSGCAMGEYFRDNGMHALIIYDDLS 275

Query: 61  KQ 62
           KQ
Sbjct: 276 KQ 277

[Close]
BLAST of MELO3C026655.2 vs. Swiss-Prot
Match: sp|P05495|ATPAM_NICPL (ATP synthase subunit alpha, mitochondrial OS=Nicotiana plumbaginifolia OX=4092 GN=ATPA PE=3 SV=1)

HSP 1 Score: 95.5 bits (236), Expect = 2.2e-19
Identity = 48/62 (77.42%), Postives = 54/62 (87.10%), Query Frame = 0 

Query: 1   MAQLVQILAKGNALEYSILVVATASDPAP-QFMASYSSCVMGEYFHNNGMHTLIIYDDVS 60
           +AQLVQIL++ NALEYSILV ATASDPAP QF+A YS C MGEYF +NGMH LIIYDD+S
Sbjct: 216 VAQLVQILSEANALEYSILVAATASDPAPLQFLAPYSGCAMGEYFRDNGMHALIIYDDLS 275

Query: 61  KQ 62
           KQ
Sbjct: 276 KQ 277

[Close]
BLAST of MELO3C026655.2 vs. Swiss-Prot
Match: sp|P0C520|ATPAM_ORYSA (ATP synthase subunit alpha, mitochondrial OS=Oryza sativa OX=4530 GN=ATPA PE=3 SV=1)

HSP 1 Score: 95.5 bits (236), Expect = 2.2e-19
Identity = 48/62 (77.42%), Postives = 54/62 (87.10%), Query Frame = 0 

Query: 1   MAQLVQILAKGNALEYSILVVATASDPAP-QFMASYSSCVMGEYFHNNGMHTLIIYDDVS 60
           +AQLVQIL++ NALEYSILV ATASDPAP QF+A YS C MGEYF +NGMH LIIYDD+S
Sbjct: 216 VAQLVQILSEANALEYSILVAATASDPAPLQFLAPYSGCAMGEYFRDNGMHALIIYDDLS 275

Query: 61  KQ 62
           KQ
Sbjct: 276 KQ 277

[Close]
BLAST of MELO3C026655.2 vs. Swiss-Prot
Match: sp|P0C521|ATPAM_ORYSI (ATP synthase subunit alpha, mitochondrial OS=Oryza sativa subsp. indica OX=39946 GN=ATPA PE=3 SV=1)

HSP 1 Score: 95.5 bits (236), Expect = 2.2e-19
Identity = 48/62 (77.42%), Postives = 54/62 (87.10%), Query Frame = 0 

Query: 1   MAQLVQILAKGNALEYSILVVATASDPAP-QFMASYSSCVMGEYFHNNGMHTLIIYDDVS 60
           +AQLVQIL++ NALEYSILV ATASDPAP QF+A YS C MGEYF +NGMH LIIYDD+S
Sbjct: 216 VAQLVQILSEANALEYSILVAATASDPAPLQFLAPYSGCAMGEYFRDNGMHALIIYDDLS 275

Query: 61  KQ 62
           KQ
Sbjct: 276 KQ 277

[Close]
BLAST of MELO3C026655.2 vs. TrEMBL
Match: tr|G3EU05|G3EU05_CUCME (ATP synthase subunit alpha OS=Cucumis melo subsp. melo OX=412675 GN=atp1 PE=3 SV=1)

HSP 1 Score: 99.0 bits (245), Expect = 3.9e-18
Identity = 50/62 (80.65%), Postives = 55/62 (88.71%), Query Frame = 0 

Query: 1   MAQLVQILAKGNALEYSILVVATASDPAP-QFMASYSSCVMGEYFHNNGMHTLIIYDDVS 60
           +AQLVQILA+GNALEYSILV ATASDPAP QF+A YS C MGEYF +NGMH LIIYDD+S
Sbjct: 218 VAQLVQILAEGNALEYSILVAATASDPAPLQFLAPYSGCAMGEYFRDNGMHALIIYDDLS 277

Query: 61  KQ 62
           KQ
Sbjct: 278 KQ 279

[Close]
BLAST of MELO3C026655.2 vs. TrEMBL
Match: tr|A0A2P6P0Y8|A0A2P6P0Y8_ROSCH (ATP synthase subunit alpha OS=Rosa chinensis OX=74649 GN=RchiOBHm_MTg0498251 PE=3 SV=1)

HSP 1 Score: 98.2 bits (243), Expect = 6.7e-18
Identity = 49/62 (79.03%), Postives = 55/62 (88.71%), Query Frame = 0 

Query: 1   MAQLVQILAKGNALEYSILVVATASDPAP-QFMASYSSCVMGEYFHNNGMHTLIIYDDVS 60
           +AQLVQIL++GNA+EYSILV ATASDPAP QFMA YS C MGEYF +NGMH LIIYDD+S
Sbjct: 216 VAQLVQILSEGNAMEYSILVAATASDPAPLQFMAPYSGCAMGEYFRDNGMHALIIYDDLS 275

Query: 61  KQ 62
           KQ
Sbjct: 276 KQ 277

[Close]
BLAST of MELO3C026655.2 vs. TrEMBL
Match: tr|D0QLF3|D0QLF3_9CARY (ATP synthase subunit alpha (Fragment) OS=Silene gallinyi OX=663347 GN=atp1 PE=4 SV=1)

HSP 1 Score: 97.8 bits (242), Expect = 8.8e-18
Identity = 49/62 (79.03%), Postives = 55/62 (88.71%), Query Frame = 0 

Query: 1   MAQLVQILAKGNALEYSILVVATASDPAP-QFMASYSSCVMGEYFHNNGMHTLIIYDDVS 60
           +AQLVQIL++GNALEYSILV ATASDPAP QF+A YS C MGEYF +NGMH LIIYDD+S
Sbjct: 166 VAQLVQILSEGNALEYSILVAATASDPAPLQFLAPYSGCAMGEYFRDNGMHALIIYDDLS 225

Query: 61  KQ 62
           KQ
Sbjct: 226 KQ 227

[Close]
BLAST of MELO3C026655.2 vs. TrEMBL
Match: tr|Q7M2G6|Q7M2G6_OENVI (ATP synthase subunit alpha OS=Oenothera villaricae OX=3941 PE=3 SV=1)

HSP 1 Score: 97.8 bits (242), Expect = 8.8e-18
Identity = 49/62 (79.03%), Postives = 55/62 (88.71%), Query Frame = 0 

Query: 1   MAQLVQILAKGNALEYSILVVATASDPAP-QFMASYSSCVMGEYFHNNGMHTLIIYDDVS 60
           +AQLVQIL++GNALEYSILV ATASDPAP QF+A YS C MGEYF +NGMH LIIYDD+S
Sbjct: 216 VAQLVQILSEGNALEYSILVAATASDPAPLQFLAPYSGCAMGEYFRDNGMHALIIYDDLS 275

Query: 61  KQ 62
           KQ
Sbjct: 276 KQ 277

[Close]
BLAST of MELO3C026655.2 vs. TrEMBL
Match: tr|E5DKD4|E5DKD4_MORLO (ATP synthase subunit alpha (Fragment) OS=Morina longifolia OX=180562 GN=atp1 PE=4 SV=1)

HSP 1 Score: 97.8 bits (242), Expect = 8.8e-18
Identity = 49/62 (79.03%), Postives = 55/62 (88.71%), Query Frame = 0 

Query: 1   MAQLVQILAKGNALEYSILVVATASDPAP-QFMASYSSCVMGEYFHNNGMHTLIIYDDVS 60
           +AQLVQIL++GNALEYSILV ATASDPAP QF+A YS C MGEYF +NGMH LIIYDD+S
Sbjct: 166 VAQLVQILSEGNALEYSILVAATASDPAPLQFLAPYSGCAMGEYFRDNGMHALIIYDDLS 225

Query: 61  KQ 62
           KQ
Sbjct: 226 KQ 227

The following BLAST results are available for this feature:
BLAST of MELO3C026655.2 vs. NCBI nr
Match NameE-valueIdentityDescription
AEN56129.16.0e-1880.65ATPase subunit 1 (mitochondrion) [Cucumis melo subsp. melo][more]
PRQ15600.11.0e-1779.03putative H(+)-transporting two-sector ATPase (mitochondrion) [Rosa chinensis][more]
AAF16978.11.3e-1779.03ATPase alpha subunit, partial (mitochondrion) [Cocculus trilobus][more]
AAF16977.11.3e-1779.03ATPase alpha subunit, partial (mitochondrion) [Cissampelos pareira][more]
AAV66507.11.3e-1779.03F1-ATPase alpha subunit, partial (mitochondrion) [Plantago rigida][more]
BLAST of MELO3C026655.2 vs. TAIR10
Match NameE-valueIdentityDescription
AT2G07698.12.9e-1972.58ATPase, F1 complex, alpha subunit protein[more]
ATMG01190.12.9e-1972.58ATP synthase subunit 1[more]
ATCG00120.13.6e-0948.39ATP synthase subunit alpha[more]
BLAST of MELO3C026655.2 vs. Swiss-Prot
Match NameE-valueIdentityDescription
sp|P05492|ATPAM_OENBI4.3e-2079.03ATP synthase subunit alpha, mitochondrial OS=Oenothera biennis OX=3942 GN=ATPA P... [more]
sp|Q06735|ATPAM_BETVU2.2e-1977.42ATP synthase subunit alpha, mitochondrial OS=Beta vulgaris OX=161934 GN=ATPA PE=... [more]
sp|P05495|ATPAM_NICPL2.2e-1977.42ATP synthase subunit alpha, mitochondrial OS=Nicotiana plumbaginifolia OX=4092 G... [more]
sp|P0C520|ATPAM_ORYSA2.2e-1977.42ATP synthase subunit alpha, mitochondrial OS=Oryza sativa OX=4530 GN=ATPA PE=3 S... [more]
sp|P0C521|ATPAM_ORYSI2.2e-1977.42ATP synthase subunit alpha, mitochondrial OS=Oryza sativa subsp. indica OX=39946... [more]
BLAST of MELO3C026655.2 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|G3EU05|G3EU05_CUCME3.9e-1880.65ATP synthase subunit alpha OS=Cucumis melo subsp. melo OX=412675 GN=atp1 PE=3 SV... [more]
tr|A0A2P6P0Y8|A0A2P6P0Y8_ROSCH6.7e-1879.03ATP synthase subunit alpha OS=Rosa chinensis OX=74649 GN=RchiOBHm_MTg0498251 PE=... [more]
tr|D0QLF3|D0QLF3_9CARY8.8e-1879.03ATP synthase subunit alpha (Fragment) OS=Silene gallinyi OX=663347 GN=atp1 PE=4 ... [more]
tr|Q7M2G6|Q7M2G6_OENVI8.8e-1879.03ATP synthase subunit alpha OS=Oenothera villaricae OX=3941 PE=3 SV=1[more]
tr|E5DKD4|E5DKD4_MORLO8.8e-1879.03ATP synthase subunit alpha (Fragment) OS=Morina longifolia OX=180562 GN=atp1 PE=... [more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0005524ATP binding
Vocabulary: INTERPRO
TermDefinition
IPR027417P-loop_NTPase
IPR000194ATPase_F1/V1/A1_a/bsu_nucl-bd
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006754 ATP biosynthetic process
biological_process GO:0046034 ATP metabolic process
biological_process GO:0015986 ATP synthesis coupled proton transport
biological_process GO:0006811 ion transport
biological_process GO:0015992 proton transport
biological_process GO:0006810 transport
cellular_component GO:0005739 mitochondrion
cellular_component GO:0045261 proton-transporting ATP synthase complex, catalytic core F(1)
molecular_function GO:0032559 adenyl ribonucleotide binding
molecular_function GO:0005524 ATP binding
molecular_function GO:0000166 nucleotide binding
molecular_function GO:0046933 proton-transporting ATP synthase activity, rotational mechanism
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C026655.2.1MELO3C026655.2.1mRNA


InterPro
Analysis Name: InterPro Annotations of melon v3.6.1
Date Performed: 2018-09-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000194ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domainPFAMPF00006ATP-synt_abcoord: 1..60
e-value: 3.8E-10
score: 39.7
NoneNo IPR availableGENE3DG3DSA:3.40.50.12240coord: 1..61
e-value: 1.6E-14
score: 55.4
NoneNo IPR availablePANTHERPTHR43089FAMILY NOT NAMEDcoord: 2..61
IPR027417P-loop containing nucleoside triphosphate hydrolaseSUPERFAMILYSSF52540P-loop containing nucleoside triphosphate hydrolasescoord: 2..60

Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
MELO3C026655.2Cucumber (Gy14) v2cgybmedB183
MELO3C026655.2Wild cucumber (PI 183967)cpimedB206
MELO3C026655.2Cucumber (Chinese Long) v2cumedB204
MELO3C026655.2Watermelon (Charleston Gray)medwcgB344
MELO3C026655.2Cucumber (Chinese Long) v3cucmedB208
MELO3C026655.2Watermelon (97103) v2medwmbB339