MELO3C026466 (gene) Melon (DHL92) v3.5.1

Overview
NameMELO3C026466
Typegene
OrganismCucumis melo (Melon (DHL92) v3.5.1)
DescriptionGag-pol polyprotein
Locationchr10 : 22286140 .. 22286379 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGATTGCCTTTCTTAATTCAGTGGATAACATATGTTGGAAATCCGTTTTGACAGGATGGGAATCGCCTTCTGTTAAAGATGTTGCTAGCAAAACTACTCCGAAGCGTGAGATTACCCGGACAAAGGAGGAAGATGAAGAATTGTTTGGAAATTCGAAGGCTCTAAATGCATTGTTCAATGGTGTGGACCATAATGTCTTCAAGCTTATTAACGCATGTACCTCAGCAAAAGAAGGCTAG

mRNA sequence

ATGATTGCCTTTCTTAATTCAGTGGATAACATATGTTGGAAATCCGTTTTGACAGGATGGGAATCGCCTTCTGTTAAAGATGTTGCTAGCAAAACTACTCCGAAGCGTGAGATTACCCGGACAAAGGAGGAAGATGAAGAATTGTTTGGAAATTCGAAGGCTCTAAATGCATTGTTCAATGGTGTGGACCATAATGTCTTCAAGCTTATTAACGCATGTACCTCAGCAAAAGAAGGCTAG

Coding sequence (CDS)

ATGATTGCCTTTCTTAATTCAGTGGATAACATATGTTGGAAATCCGTTTTGACAGGATGGGAATCGCCTTCTGTTAAAGATGTTGCTAGCAAAACTACTCCGAAGCGTGAGATTACCCGGACAAAGGAGGAAGATGAAGAATTGTTTGGAAATTCGAAGGCTCTAAATGCATTGTTCAATGGTGTGGACCATAATGTCTTCAAGCTTATTAACGCATGTACCTCAGCAAAAGAAGGCTAG

Protein sequence

MIAFLNSVDNICWKSVLTGWESPSVKDVASKTTPKREITRTKEEDEELFGNSKALNALFNGVDHNVFKLINACTSAKEG*
Homology
[Close]
BLAST of MELO3C026466 vs. TrEMBL
Match: Q84VI2_SOYBN (Gag-pol polyprotein OS=Glycine max GN=gag-pol PE=4 SV=1)

HSP 1 Score: 93.6 bits (231), Expect = 1.2e-16
Identity = 47/80 (58.75%), Postives = 56/80 (70.00%), Query Frame = 1 

Query: 1   MIAFLNSVDNICWKSVLTGWESPSVKDVASKTTP--KREITRTKEEDEELFGNSKALNAL 60
           M+AFL S+D+  WK+V+ GWE P + D   K T   K E   TKEEDE   GNSKALNAL
Sbjct: 28  MVAFLKSLDSRTWKAVIKGWEHPKMLDTEGKPTDELKPEEDWTKEEDELALGNSKALNAL 87

Query: 61  FNGVDHNVFKLINACTSAKE 79
           FNGVD N+F+LIN CT AK+
Sbjct: 88  FNGVDKNIFRLINTCTVAKD 107

[Close]
BLAST of MELO3C026466 vs. TrEMBL
Match: Q84VI4_SOYBN (Gag-pol polyprotein OS=Glycine max GN=gag-pol PE=4 SV=1)

HSP 1 Score: 93.6 bits (231), Expect = 1.2e-16
Identity = 47/80 (58.75%), Postives = 56/80 (70.00%), Query Frame = 1 

Query: 1   MIAFLNSVDNICWKSVLTGWESPSVKDVASKTTP--KREITRTKEEDEELFGNSKALNAL 60
           M+AFL S+D+  WK+V+ GWE P + D   K T   K E   TKEEDE   GNSKALNAL
Sbjct: 28  MVAFLKSLDSRTWKAVIKGWEHPKMLDTEGKPTDELKPEEDWTKEEDELALGNSKALNAL 87

Query: 61  FNGVDHNVFKLINACTSAKE 79
           FNGVD N+F+LIN CT AK+
Sbjct: 88  FNGVDKNIFRLINTCTVAKD 107

[Close]
BLAST of MELO3C026466 vs. TrEMBL
Match: Q84VH8_SOYBN (Gag-pol polyprotein OS=Glycine max GN=gag-pol PE=4 SV=1)

HSP 1 Score: 93.6 bits (231), Expect = 1.2e-16
Identity = 47/80 (58.75%), Postives = 56/80 (70.00%), Query Frame = 1 

Query: 1   MIAFLNSVDNICWKSVLTGWESPSVKDVASKTTP--KREITRTKEEDEELFGNSKALNAL 60
           M+AFL S+D+  WK+V+ GWE P + D   K T   K E   TKEEDE   GNSKALNAL
Sbjct: 28  MVAFLKSLDSRTWKAVIKGWEHPKMLDTEGKPTDELKPEEDWTKEEDELALGNSKALNAL 87

Query: 61  FNGVDHNVFKLINACTSAKE 79
           FNGVD N+F+LIN CT AK+
Sbjct: 88  FNGVDKNIFRLINTCTVAKD 107

[Close]
BLAST of MELO3C026466 vs. TrEMBL
Match: Q84VH6_SOYBN (Gag-pol polyprotein OS=Glycine max GN=gag-pol PE=4 SV=1)

HSP 1 Score: 93.2 bits (230), Expect = 1.5e-16
Identity = 47/80 (58.75%), Postives = 56/80 (70.00%), Query Frame = 1 

Query: 1   MIAFLNSVDNICWKSVLTGWESPSVKDVASKTTP--KREITRTKEEDEELFGNSKALNAL 60
           M+AFL S+D+  WK+V+ GWE P + D   K T   K E   TKEEDE   GNSKALNAL
Sbjct: 28  MVAFLKSLDSRTWKAVIKGWEHPKMLDTEGKPTNELKPEEDWTKEEDELALGNSKALNAL 87

Query: 61  FNGVDHNVFKLINACTSAKE 79
           FNGVD N+F+LIN CT AK+
Sbjct: 88  FNGVDKNIFRLINTCTVAKD 107

[Close]
BLAST of MELO3C026466 vs. TrEMBL
Match: Q84VI0_SOYBN (Gag-pol polyprotein OS=Glycine max GN=gag-pol PE=4 SV=1)

HSP 1 Score: 93.2 bits (230), Expect = 1.5e-16
Identity = 47/80 (58.75%), Postives = 56/80 (70.00%), Query Frame = 1 

Query: 1   MIAFLNSVDNICWKSVLTGWESPSVKDVASKTTP--KREITRTKEEDEELFGNSKALNAL 60
           M+AFL S+D+  WK+V+ GWE P + D   K T   K E   TKEEDE   GNSKALNAL
Sbjct: 28  MVAFLKSLDSRTWKAVIKGWEHPKMLDTEGKPTNELKPEEDWTKEEDELALGNSKALNAL 87

Query: 61  FNGVDHNVFKLINACTSAKE 79
           FNGVD N+F+LIN CT AK+
Sbjct: 88  FNGVDKNIFRLINTCTVAKD 107

[Close]
BLAST of MELO3C026466 vs. NCBI nr
Match: gi|659072224|ref|XP_008464095.1| (PREDICTED: uncharacterized protein LOC103502061 [Cucumis melo])

HSP 1 Score: 102.4 bits (254), Expect = 3.6e-19
Identity = 47/78 (60.26%), Postives = 61/78 (78.21%), Query Frame = 1 

Query: 1   MIAFLNSVDNICWKSVLTGWESPSVKDVASKTTPKREITRTKEEDEELFGNSKALNALFN 60
           +IAF+ S+D+ CWK+++ G E PS KDVA K T K+EIT +K++DE  FGNS+ALNA+FN
Sbjct: 35  IIAFIKSIDSKCWKAMIAGLEHPSPKDVAGKETLKQEITWSKDKDEAAFGNSRALNAIFN 94

Query: 61  GVDHNVFKLINACTSAKE 79
           GVD N+FK IN C  AKE
Sbjct: 95  GVDQNIFKWINTCLFAKE 112

[Close]
BLAST of MELO3C026466 vs. NCBI nr
Match: gi|29423279|gb|AAO73527.1| (gag-pol polyprotein [Glycine max])

HSP 1 Score: 93.6 bits (231), Expect = 1.7e-16
Identity = 47/80 (58.75%), Postives = 56/80 (70.00%), Query Frame = 1 

Query: 1   MIAFLNSVDNICWKSVLTGWESPSVKDVASKTTP--KREITRTKEEDEELFGNSKALNAL 60
           M+AFL S+D+  WK+V+ GWE P + D   K T   K E   TKEEDE   GNSKALNAL
Sbjct: 28  MVAFLKSLDSRTWKAVIKGWEHPKMLDTEGKPTDELKPEEDWTKEEDELALGNSKALNAL 87

Query: 61  FNGVDHNVFKLINACTSAKE 79
           FNGVD N+F+LIN CT AK+
Sbjct: 88  FNGVDKNIFRLINTCTVAKD 107

[Close]
BLAST of MELO3C026466 vs. NCBI nr
Match: gi|29423270|gb|AAO73521.1| (gag-pol polyprotein [Glycine max])

HSP 1 Score: 93.6 bits (231), Expect = 1.7e-16
Identity = 47/80 (58.75%), Postives = 56/80 (70.00%), Query Frame = 1 

Query: 1   MIAFLNSVDNICWKSVLTGWESPSVKDVASKTTP--KREITRTKEEDEELFGNSKALNAL 60
           M+AFL S+D+  WK+V+ GWE P + D   K T   K E   TKEEDE   GNSKALNAL
Sbjct: 28  MVAFLKSLDSRTWKAVIKGWEHPKMLDTEGKPTDELKPEEDWTKEEDELALGNSKALNAL 87

Query: 61  FNGVDHNVFKLINACTSAKE 79
           FNGVD N+F+LIN CT AK+
Sbjct: 88  FNGVDKNIFRLINTCTVAKD 107

[Close]
BLAST of MELO3C026466 vs. NCBI nr
Match: gi|29423273|gb|AAO73523.1| (gag-pol polyprotein [Glycine max])

HSP 1 Score: 93.6 bits (231), Expect = 1.7e-16
Identity = 47/80 (58.75%), Postives = 56/80 (70.00%), Query Frame = 1 

Query: 1   MIAFLNSVDNICWKSVLTGWESPSVKDVASKTTP--KREITRTKEEDEELFGNSKALNAL 60
           M+AFL S+D+  WK+V+ GWE P + D   K T   K E   TKEEDE   GNSKALNAL
Sbjct: 28  MVAFLKSLDSRTWKAVIKGWEHPKMLDTEGKPTDELKPEEDWTKEEDELALGNSKALNAL 87

Query: 61  FNGVDHNVFKLINACTSAKE 79
           FNGVD N+F+LIN CT AK+
Sbjct: 88  FNGVDKNIFRLINTCTVAKD 107

[Close]
BLAST of MELO3C026466 vs. NCBI nr
Match: gi|3777527|gb|AAC64917.1| (gag-pol polyprotein [Glycine max])

HSP 1 Score: 93.2 bits (230), Expect = 2.2e-16
Identity = 47/80 (58.75%), Postives = 56/80 (70.00%), Query Frame = 1 

Query: 1  MIAFLNSVDNICWKSVLTGWESPSVKDVASKTTP--KREITRTKEEDEELFGNSKALNAL 60
          M+AFL S+D+  WK+V+ GWE P + D   K T   K E   TKEEDE   GNSKALNAL
Sbjct: 1  MVAFLKSLDSRTWKAVIKGWEHPKMLDTEGKPTNELKPEEDWTKEEDELALGNSKALNAL 60

Query: 61 FNGVDHNVFKLINACTSAKE 79
          FNGVD N+F+LIN CT AK+
Sbjct: 61 FNGVDKNIFRLINTCTVAKD 80

The following BLAST results are available for this feature:
BLAST of MELO3C026466 vs. TrEMBL
Match NameE-valueIdentityDescription
Q84VI2_SOYBN1.2e-1658.75Gag-pol polyprotein OS=Glycine max GN=gag-pol PE=4 SV=1[more]
Q84VI4_SOYBN1.2e-1658.75Gag-pol polyprotein OS=Glycine max GN=gag-pol PE=4 SV=1[more]
Q84VH8_SOYBN1.2e-1658.75Gag-pol polyprotein OS=Glycine max GN=gag-pol PE=4 SV=1[more]
Q84VH6_SOYBN1.5e-1658.75Gag-pol polyprotein OS=Glycine max GN=gag-pol PE=4 SV=1[more]
Q84VI0_SOYBN1.5e-1658.75Gag-pol polyprotein OS=Glycine max GN=gag-pol PE=4 SV=1[more]
BLAST of MELO3C026466 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659072224|ref|XP_008464095.1|3.6e-1960.26PREDICTED: uncharacterized protein LOC103502061 [Cucumis melo][more]
gi|29423279|gb|AAO73527.1|1.7e-1658.75gag-pol polyprotein [Glycine max][more]
gi|29423270|gb|AAO73521.1|1.7e-1658.75gag-pol polyprotein [Glycine max][more]
gi|29423273|gb|AAO73523.1|1.7e-1658.75gag-pol polyprotein [Glycine max][more]
gi|3777527|gb|AAC64917.1|2.2e-1658.75gag-pol polyprotein [Glycine max][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C026466T1MELO3C026466T1mRNA


Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
MELO3C026466Bottle gourd (USVL1VR-Ls)lsimeB081
MELO3C026466Wax gourdmewgoB079
MELO3C026466Cucurbita maxima (Rimu)cmameB663
MELO3C026466Cucurbita moschata (Rifu)cmomeB656
MELO3C026466Wild cucumber (PI 183967)cpimeB378
MELO3C026466Watermelon (Charleston Gray)mewcgB051
MELO3C026466Watermelon (97103) v1mewmB074
MELO3C026466Cucurbita pepo (Zucchini)cpemeB374