MELO3C026452 (gene) Melon (DHL92) v3.5.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C026452
Type	gene
Organism	Cucumis melo (Melon (DHL92) v3.5.1)
Description	Chromosomal replication initiator protein DnaA
Location	chr10 : 22058511 .. 22058798 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCGATTGTTTCAAGGCTTCCATATTCCAGATGTTGCTGCTAAATTTGAAAGTGCGCCTGGAGGGACCAGGGCTGCTATTGCTACGTATCCTACTATTGGTCAGCCTCTGGTCCTCTCTGTCCCGTTAGCCAATTGGCTGTTGCAAGCATTGATGGCAGAATCTCGCTCCCTCACTCGCCAAATCAGTGAACTTTCTGATAGGCAAACTGTGTTGGATGTTGTTCTACGTGACTTTCGACATGTGGCTTCAGGGTCTCCTACTTCTCTATCAGATCATCAAGGATGA

mRNA sequence

ATGCGATTGTTTCAAGGCTTCCATATTCCAGATGTTGCTGCTAAATTTGAAAGTGCGCCTGGAGGGACCAGGGCTGCTATTGCTACGTATCCTACTATTGGTCAGCCTCTGGTCCTCTCTGTCCCGTTAGCCAATTGGCTGTTGCAAGCATTGATGGCAGAATCTCGCTCCCTCACTCGCCAAATCAGTGAACTTTCTGATAGGCAAACTGTGTTGGATGTTGTTCTACGTGACTTTCGACATGTGGCTTCAGGGTCTCCTACTTCTCTATCAGATCATCAAGGATGA

Coding sequence (CDS)

ATGCGATTGTTTCAAGGCTTCCATATTCCAGATGTTGCTGCTAAATTTGAAAGTGCGCCTGGAGGGACCAGGGCTGCTATTGCTACGTATCCTACTATTGGTCAGCCTCTGGTCCTCTCTGTCCCGTTAGCCAATTGGCTGTTGCAAGCATTGATGGCAGAATCTCGCTCCCTCACTCGCCAAATCAGTGAACTTTCTGATAGGCAAACTGTGTTGGATGTTGTTCTACGTGACTTTCGACATGTGGCTTCAGGGTCTCCTACTTCTCTATCAGATCATCAAGGATGA

Protein sequence

MRLFQGFHIPDVAAKFESAPGGTRAAIATYPTIGQPLVLSVPLANWLLQALMAESRSLTRQISELSDRQTVLDVVLRDFRHVASGSPTSLSDHQG*

Homology

[Close]

BLAST of MELO3C026452 vs. NCBI nr
Match: gi|659082066|ref|XP_008441650.1| (PREDICTED: uncharacterized protein LOC103485731 [Cucumis melo])

HSP 1 Score: 112.1 bits (279), Expect = 5.5e-22
Identity = 56/92 (60.87%), Postives = 70/92 (76.09%), Query Frame = 1


Query: 1   MRLFQGFHIPDVAAKFESAPGGTRAAIATYPTIGQPLVLSVPLANWLLQALMAESRSLTR 60
           MRLFQG H PDVAA+F++APGGT    A+ P +G P+ L V LAN LLQAL+A+SR+LT 
Sbjct: 426 MRLFQGAHFPDVAAEFDNAPGGTSTPAASQPAVGHPVTLCVSLANRLLQALIAKSRALTC 485

Query: 61  QISELSDRQTVLDVVLRDFRHVASGSPTSLSD 93
           QISEL+DR+TVLD ++RD R  ASG+    SD
Sbjct: 486 QISELTDRRTVLDAIIRDLRRTASGTTPPPSD 517

[Close]

BLAST of MELO3C026452 vs. NCBI nr
Match: gi|659124373|ref|XP_008462125.1| (PREDICTED: uncharacterized protein LOC103500554 [Cucumis melo])

HSP 1 Score: 105.1 bits (261), Expect = 6.7e-20
Identity = 55/92 (59.78%), Postives = 71/92 (77.17%), Query Frame = 1


Query: 1   MRLFQGFHIPDVAAKFESAPGGTRAAIATYPTIGQPLVLSVPLANWLLQALMAESRSLTR 60
           MRLFQG H PDVAA+F++A GGT    A+ PT+G P+ LS+ L N LLQAL+A SR+LTR
Sbjct: 633 MRLFQGAHFPDVAAEFDNAQGGTSTPTASQPTVGHPVTLSMSLTNRLLQALIAVSRALTR 692

Query: 61  QISELSDRQTVLDVVLRDFRHVASGSPTSLSD 93
           QISEL++R+T+LD V+RD +  AS + TS SD
Sbjct: 693 QISELTNRRTILDAVIRDLQRAASVT-TSPSD 723

[Close]

BLAST of MELO3C026452 vs. NCBI nr
Match: gi|659114605|ref|XP_008457140.1| (PREDICTED: uncharacterized protein LOC103496886 [Cucumis melo])

HSP 1 Score: 103.2 bits (256), Expect = 2.6e-19
Identity = 54/92 (58.70%), Postives = 66/92 (71.74%), Query Frame = 1


Query: 1   MRLFQGFHIPDVAAKFESAPGGTRAAIATYPTIGQPLVLSVPLANWLLQALMAESRSLTR 60
           MRLFQG H  DVA +F++ PG T     + P +G P+ LSV LAN L QAL+AESR+LTR
Sbjct: 475 MRLFQGAHFLDVAVEFDNTPGETSTPAVSQPAVGHPVTLSVSLANRLPQALIAESRALTR 534

Query: 61  QISELSDRQTVLDVVLRDFRHVASGSPTSLSD 93
           QISEL+DR+TVLD V+ D R VASG+    SD
Sbjct: 535 QISELTDRRTVLDPVISDLRRVASGTTPPPSD 566

[Close]

BLAST of MELO3C026452 vs. NCBI nr
Match: gi|659118726|ref|XP_008459271.1| (PREDICTED: uncharacterized protein LOC103498446 [Cucumis melo])

HSP 1 Score: 102.4 bits (254), Expect = 4.4e-19
Identity = 53/92 (57.61%), Postives = 66/92 (71.74%), Query Frame = 1


Query: 1   MRLFQGFHIPDVAAKFESAPGGTRAAIATYPTIGQPLVLSVPLANWLLQALMAESRSLTR 60
           M LFQG H P+VA +F++A GGT    A  P +  P+ LSV LAN LLQAL+AESR+LTR
Sbjct: 412 MHLFQGTHFPNVATEFDNALGGTSTPAALQPAVDHPVTLSVSLANRLLQALIAESRALTR 471

Query: 61  QISELSDRQTVLDVVLRDFRHVASGSPTSLSD 93
           QISEL+DR+ VLD ++RD R  AS +  S SD
Sbjct: 472 QISELTDRRIVLDAIIRDLRRAASRTTPSPSD 503

[Close]

BLAST of MELO3C026452 vs. NCBI nr
Match: gi|659102889|ref|XP_008452370.1| (PREDICTED: uncharacterized protein LOC103493432 [Cucumis melo])

HSP 1 Score: 96.3 bits (238), Expect = 3.1e-17
Identity = 49/86 (56.98%), Postives = 63/86 (73.26%), Query Frame = 1


Query: 1   MRLFQGFHIPDVAAKFESAPGGTRAAIATYPTIGQPLVLSVPLANWLLQALMAESRSLTR 60
           MRLFQG HIP+VA++F++A   T    A+ P +G  L LSV LAN LLQAL+ ESR+LT 
Sbjct: 181 MRLFQGAHIPNVASEFDNAASKTSTPAASQPAVGHALTLSVSLANRLLQALIVESRALTH 240

Query: 61  QISELSDRQTVLDVVLRDFRHVASGS 87
           +ISELSDR+TVLD V+RD +    G+
Sbjct: 241 RISELSDRRTVLDAVIRDLQRATFGA 266

The following BLAST results are available for this feature:

BLAST of MELO3C026452 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659082066\|ref\|XP_008441650.1\|	5.5e-22	60.87	PREDICTED: uncharacterized protein LOC103485731 [Cucumis melo]	[more]
gi\|659124373\|ref\|XP_008462125.1\|	6.7e-20	59.78	PREDICTED: uncharacterized protein LOC103500554 [Cucumis melo]	[more]
gi\|659114605\|ref\|XP_008457140.1\|	2.6e-19	58.70	PREDICTED: uncharacterized protein LOC103496886 [Cucumis melo]	[more]
gi\|659118726\|ref\|XP_008459271.1\|	4.4e-19	57.61	PREDICTED: uncharacterized protein LOC103498446 [Cucumis melo]	[more]
gi\|659102889\|ref\|XP_008452370.1\|	3.1e-17	56.98	PREDICTED: uncharacterized protein LOC103493432 [Cucumis melo]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C026452T1	MELO3C026452T1	mRNA

InterPro

Analysis Name: InterPro Annotations of melon
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	unknown	Coil	Coil	coord: 48..68 scor

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
MELO3C026452	Wild cucumber (PI 183967)	cpimeB378
MELO3C026452	Watermelon (Charleston Gray)	mewcgB051
MELO3C026452	Watermelon (97103) v1	mewmB074
MELO3C026452	Cucurbita pepo (Zucchini)	cpemeB374
MELO3C026452	Bottle gourd (USVL1VR-Ls)	lsimeB081
MELO3C026452	Wax gourd	mewgoB079
MELO3C026452	Cucumber (Gy14) v1	cgymeB462
MELO3C026452	Cucurbita maxima (Rimu)	cmameB663
MELO3C026452	Cucurbita moschata (Rifu)	cmomeB656