MELO3C026430 (gene) Melon (DHL92) v3.5.1

Overview
NameMELO3C026430
Typegene
OrganismCucumis melo (Melon (DHL92) v3.5.1)
DescriptionCoffea canephora DH200=94 genomic scaffold, scaffold_12
Locationchr10 : 21448758 .. 21450604 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
TGCCTCATCTTTTCCATTTCATTCTTCTCCTTCTTCTTCACGTGTATTCAGCGCCGCCCTCACCCTTTTCTTCTTTATTTTCTTCGTCTAGCCAACCTCTCTTCTTTGTCTAGTCGTCGTTGGTCATCTCTGTCTTTAACTAAATGCCAGCCGCCATCAATCCCAATCGCGTCTCCCCGTCGTTGAAGCCAATCGCTCGTCATCGCTCCATCTCTGTCTTTCATCTGTCGCGTCTCCCCGTTGTCGAAACCCAACCGCCTGCTGTTGCGTTCTTCCTTCGTTACCGTCCGACGAAGCCCAGAGCCTGTAGCCTCCTCGTCCATTTACTAAATCTAAATCGAATGGTCAGTTGCAACTCCAAGTTCTACGTCGATCCATTCCCTATTCGAGCGTTACCCTCAAAGTTGAGTCGTACTCACGAGTTTTCCTTTTCAACCGTTTTGAGTTTCCTTGTGTTTGCACGTCGCTTCTACCTTGCTATGGGTTTTGTGGTAAGGTTAGTTTTTTGAATTTTGTAGTTGTTTCCATGACCCTTTTAAGTATAATTGTTGGATTAAATTGTTGCTCCTTGAAGGTATTGGAATTGAGTTCTTGAATTTCCAACAATCTTGCGTTGGAGTTCAATTCTCCATTTACTTGGGTAAGCTCGTGAATGTCACTTTGAAGTGTTTTAGATGAAATGATTGGTTTAGGAAAATATTTGATTTTCTGTTTGAAACCTTAAGTTTATGATAGGTTGCTTCATTGGACTTCTTTTTTATCAAGGATCTTAGCTAAGCGTAAGGTAAGAGATTTCTACTACTGGACTCATATTGAAATTGGAATGTGTTGACTGAGAAGGAAGTTGGTATATATATTGACTGAGTTAGTTCAATTGTTATGGGTAGTTGGAACGTAGAGATGGGTAGAGATGTAACGTAAAGATGGGTAGTTGGAACGTTGCTTTGGAGTTCAATTGTTATGGGTAGTTGGAACGTAGAGATGGTTTACATTATTGACTGAGTTCAGATGATTTGACTGTCATGTGTAGTTTAGATATTGATAGACTGTATTATTGGTTGA

mRNA sequence

TGCCTCATCTTTTCCATTTCATTCTTCTCCTTCTTCTTCACGTGTATTCAGCGCCGCCCTCACCCTTTTCTTCTTTATTTTCTTCGTCTAGCCAACCTCTCTTCTTTGTCTAGTCGTCGTTGGTCATCTCTGTCTTTAACTAAATGCCAGCCGCCATCAATCCCAATCGCGTCTCCCCGTCGTTGAAGCCAATCGCTCGTCATCGCTCCATCTCTGTCTTTCATCTGTCGCGTCTCCCCGTTGTCGAAACCCAACCGCCTGCTGTTGCGTTCTTCCTTCGTTACCGTCCGACGAAGCCCAGAGCCTGTAGCCTCCTCGTCCATTTACTAAATCTAAATCGAATGGTCAGTTGCAACTCCAAGTTCTACGTCGATCCATTCCCTATTCGAGCGTTACCCTCAAAGTTGAGTCGTACTCACGAGTTTTCCTTTTCAACCGTTTTGAGTTTCCTTGTGTTTGCACGTCGCTTCTACCTTGCTATGGGTTTTGTGGTATTGGAATTGAGTTCTTGAATTTCCAACAATCTTGCGTTGGAGTTCAATTCTCCATTTACTTGGGTTGCTTCATTGGACTTCTTTTTTATCAAGGATCTTAGCTAAGCGTAAGTTGGAACGTAGAGATGGGTAGAGATGTAACGTAAAGATGGGTAGTTGGAACGTTGCTTTGGAGTTCAATTGTTATGGGTAGTTGGAACGTAGAGATGGTTTACATTATTGACTGAGTTCAGATGATTTGACTGTCATGTGTAGTTTAGATATTGATAGACTGTATTATTGGTTGA

Coding sequence (CDS)

ATGCCAGCCGCCATCAATCCCAATCGCGTCTCCCCGTCGTTGAAGCCAATCGCTCGTCATCGCTCCATCTCTGTCTTTCATCTGTCGCGTCTCCCCGTTGTCGAAACCCAACCGCCTGCTGTTGCGTTCTTCCTTCGTTACCGTCCGACGAAGCCCAGAGCCTGTAGCCTCCTCGTCCATTTACTAAATCTAAATCGAATGGTCAGTTGCAACTCCAAGTTCTACGTCGATCCATTCCCTATTCGAGCGTTACCCTCAAAGTTGAGTCGTACTCACGAGTTTTCCTTTTCAACCGTTTTGAGTTTCCTTGTGTTTGCACGTCGCTTCTACCTTGCTATGGGTTTTGTGGTATTGGAATTGAGTTCTTGA
Homology
[Close]
BLAST of MELO3C026430 vs. NCBI nr
Match: gi|659129485|ref|XP_008464709.1| (PREDICTED: uncharacterized protein LOC103502528 isoform X2 [Cucumis melo])

HSP 1 Score: 236.1 bits (601), Expect = 3.2e-59
Identity = 117/117 (100.00%), Postives = 117/117 (100.00%), Query Frame = 1 

Query: 1   MPAAINPNRVSPSLKPIARHRSISVFHLSRLPVVETQPPAVAFFLRYRPTKPRACSLLVH 60
           MPAAINPNRVSPSLKPIARHRSISVFHLSRLPVVETQPPAVAFFLRYRPTKPRACSLLVH
Sbjct: 1   MPAAINPNRVSPSLKPIARHRSISVFHLSRLPVVETQPPAVAFFLRYRPTKPRACSLLVH 60

Query: 61  LLNLNRMVSCNSKFYVDPFPIRALPSKLSRTHEFSFSTVLSFLVFARRFYLAMGFVV 118
           LLNLNRMVSCNSKFYVDPFPIRALPSKLSRTHEFSFSTVLSFLVFARRFYLAMGFVV
Sbjct: 61  LLNLNRMVSCNSKFYVDPFPIRALPSKLSRTHEFSFSTVLSFLVFARRFYLAMGFVV 117

[Close]
BLAST of MELO3C026430 vs. NCBI nr
Match: gi|659129483|ref|XP_008464708.1| (PREDICTED: uncharacterized protein LOC103502528 isoform X1 [Cucumis melo])

HSP 1 Score: 235.7 bits (600), Expect = 4.2e-59
Identity = 117/118 (99.15%), Postives = 117/118 (99.15%), Query Frame = 1 

Query: 1   MPAAINPNRVSPSLKPIARHRSISVFHLSRLPVVETQPPAVAFFLRYRPTKPRACSLLVH 60
           MPAAINPNRVSPSLKPIARHRSISVFHLSRLPVVETQPPAVAFFLRYRPTKPRACSLLVH
Sbjct: 1   MPAAINPNRVSPSLKPIARHRSISVFHLSRLPVVETQPPAVAFFLRYRPTKPRACSLLVH 60

Query: 61  LLNLNRMVSCNSKFYVDPFPIRALPSKLSRTHEFSFSTVLSFLVFARRFYLAMGFVVL 119
           LLNLNRMVSCNSKFYVDPFPIRALPSKLSRTHEFSFSTVLSFLVFARRFYLAMGFV L
Sbjct: 61  LLNLNRMVSCNSKFYVDPFPIRALPSKLSRTHEFSFSTVLSFLVFARRFYLAMGFVFL 118

The following BLAST results are available for this feature:
BLAST of MELO3C026430 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659129485|ref|XP_008464709.1|3.2e-59100.00PREDICTED: uncharacterized protein LOC103502528 isoform X2 [Cucumis melo][more]
gi|659129483|ref|XP_008464708.1|4.2e-5999.15PREDICTED: uncharacterized protein LOC103502528 isoform X1 [Cucumis melo][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Unigene
This gene is associated with the following unigenes:
Unigene NameAnalysis NameSequence type in Unigene
MU56719melon EST collection version 4.0transcribed_cluster
MU56904melon EST collection version 4.0transcribed_cluster
MU57298melon EST collection version 4.0transcribed_cluster
MU58224melon EST collection version 4.0transcribed_cluster
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C026430T2MELO3C026430T2mRNA
MELO3C026430T1MELO3C026430T1mRNA


The following transcribed_cluster feature(s) are associated with this gene:

Feature NameUnique NameType
MU56719MU56719transcribed_cluster
MU58224MU58224transcribed_cluster
MU57298MU57298transcribed_cluster
MU56904MU56904transcribed_cluster


Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
MELO3C026430Cucumber (Chinese Long) v2cumeB382
MELO3C026430Watermelon (Charleston Gray)mewcgB071
MELO3C026430Watermelon (97103) v1mewmB053
MELO3C026430Cucumber (Gy14) v2cgybmeB324
MELO3C026430Cucurbita pepo (Zucchini)cpemeB368
MELO3C026430Cucurbita pepo (Zucchini)cpemeB370
MELO3C026430Bottle gourd (USVL1VR-Ls)lsimeB286
MELO3C026430Silver-seed gourdcarmeB0182
MELO3C026430Silver-seed gourdcarmeB0657
MELO3C026430Cucumber (Chinese Long) v3cucmeB386
MELO3C026430Watermelon (97103) v2mewmbB070
MELO3C026430Wax gourdmewgoB077
MELO3C026430Cucurbita maxima (Rimu)cmameB645
MELO3C026430Cucurbita maxima (Rimu)cmameB648
MELO3C026430Cucurbita moschata (Rifu)cmomeB636
MELO3C026430Cucurbita moschata (Rifu)cmomeB637
MELO3C026430Wild cucumber (PI 183967)cpimeB379