MELO3C026409.2 (gene) Melon (DHL92) v3.6.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C026409.2
Type	gene
Organism	Cucumis melo (Melon (DHL92) v3.6.1)
Description	Unknown protein
Location	chr07 : 6276876 .. 6277124 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCCTTTTACGCCCAGCCATTCCGAAGAACACTTGCCCTCTCGTCTTACTGCAGCTGCTGGCATGGAGTTAGCTAGGGCTTCTGCCTCGAGTTCTGTTATGATCGCACACGACGAAAGAGCCTTACAATTGGCAGTGCCCTTCTTCACTCACGCGATATTATTGGATCGGGCTTTTGCCCATTGTCCAAGATTCCTTACTACTACCCCCGTGGGAGTCCGAGCCGTGTCTCAGTCCCAGTGTGGTTGA

mRNA sequence

ATGCCTTTTACGCCCAGCCATTCCGAAGAACACTTGCCCTCTCGTCTTACTGCAGCTGCTGGCATGGAGTTAGCTAGGGCTTCTGCCTCGAGTTCTGTTATGATCGCACACGACGAAAGAGCCTTACAATTGGCAGTGCCCTTCTTCACTCACGCGATATTATTGGATCGGGCTTTTGCCCATTGTCCAAGATTCCTTACTACTACCCCCGTGGGAGTCCGAGCCGTGTCTCAGTCCCAGTGTGGTTGA

Coding sequence (CDS)

ATGCCTTTTACGCCCAGCCATTCCGAAGAACACTTGCCCTCTCGTCTTACTGCAGCTGCTGGCATGGAGTTAGCTAGGGCTTCTGCCTCGAGTTCTGTTATGATCGCACACGACGAAAGAGCCTTACAATTGGCAGTGCCCTTCTTCACTCACGCGATATTATTGGATCGGGCTTTTGCCCATTGTCCAAGATTCCTTACTACTACCCCCGTGGGAGTCCGAGCCGTGTCTCAGTCCCAGTGTGGTTGA

Protein sequence

MPFTPSHSEEHLPSRLTAAAGMELARASASSSVMIAHDERALQLAVPFFTHAILLDRAFAHCPRFLTTTPVGVRAVSQSQCG

Homology

[Close]

BLAST of MELO3C026409.2 vs. NCBI nr
Match: PPD92383.1 (hypothetical protein GOBAR_DD10686 [Gossypium barbadense])

HSP 1 Score: 82.4 bits (202), Expect = 7.8e-13
Identity = 46/72 (63.89%), Postives = 51/72 (70.83%), Query Frame = 0


Query: 2   PFTPSHSEEHLPSRLTAAAGMELARASASSSVMIAHDERAL-QLAVPFFTHAILLDRAFA 61
           P  P   +   P RLTAAAG ELA AS+SS VMIAH  + L + A+PFFTHAILLDRAFA
Sbjct: 93  PLRPVIPKNTCPPRLTAAAGTELAGASSSSPVMIAHSTKELYERALPFFTHAILLDRAFA 152

Query: 62  HCPRFLTTTPVG 73
           HCPRF T  P G
Sbjct: 153 HCPRFPTAAPRG 164

[Close]

BLAST of MELO3C026409.2 vs. NCBI nr
Match: PPD93439.1 (hypothetical protein GOBAR_DD09636 [Gossypium barbadense])

HSP 1 Score: 82.4 bits (202), Expect = 7.8e-13
Identity = 46/72 (63.89%), Postives = 51/72 (70.83%), Query Frame = 0


Query: 2   PFTPSHSEEHLPSRLTAAAGMELARASASSSVMIAHDERAL-QLAVPFFTHAILLDRAFA 61
           P  P   +   P RLTAAAG ELA AS+SS VMIAH  + L + A+PFFTHAILLDRAFA
Sbjct: 181 PLRPVIPKNTCPPRLTAAAGTELAGASSSSPVMIAHSTKELYERALPFFTHAILLDRAFA 240

Query: 62  HCPRFLTTTPVG 73
           HCPRF T  P G
Sbjct: 241 HCPRFPTAAPRG 252

[Close]

BLAST of MELO3C026409.2 vs. NCBI nr
Match: PPE01242.1 (hypothetical protein GOBAR_DD01736 [Gossypium barbadense])

HSP 1 Score: 82.4 bits (202), Expect = 7.8e-13
Identity = 46/72 (63.89%), Postives = 51/72 (70.83%), Query Frame = 0


Query: 2   PFTPSHSEEHLPSRLTAAAGMELARASASSSVMIAHDERAL-QLAVPFFTHAILLDRAFA 61
           P  P   +   P RLTAAAG ELA AS+SS VMIAH  + L + A+PFFTHAILLDRAFA
Sbjct: 102 PLRPVIPKNTCPPRLTAAAGTELAGASSSSPVMIAHSTKELYERALPFFTHAILLDRAFA 161

Query: 62  HCPRFLTTTPVG 73
           HCPRF T  P G
Sbjct: 162 HCPRFPTAAPRG 173

[Close]

BLAST of MELO3C026409.2 vs. NCBI nr
Match: PPR89027.1 (hypothetical protein GOBAR_AA31647 [Gossypium barbadense])

HSP 1 Score: 82.4 bits (202), Expect = 7.8e-13
Identity = 46/72 (63.89%), Postives = 51/72 (70.83%), Query Frame = 0


Query: 2   PFTPSHSEEHLPSRLTAAAGMELARASASSSVMIAHDERAL-QLAVPFFTHAILLDRAFA 61
           P  P   +   P RLTAAAG ELA AS+SS VMIAH  + L + A+PFFTHAILLDRAFA
Sbjct: 87  PLRPVIPKNTCPPRLTAAAGTELAGASSSSPVMIAHSTKELYERALPFFTHAILLDRAFA 146

Query: 62  HCPRFLTTTPVG 73
           HCPRF T  P G
Sbjct: 147 HCPRFPTAAPRG 158

[Close]

BLAST of MELO3C026409.2 vs. NCBI nr
Match: PLY67130.1 (hypothetical protein LSAT_5X152921 [Lactuca sativa])

HSP 1 Score: 77.4 bits (189), Expect = 2.5e-11
Identity = 44/73 (60.27%), Postives = 48/73 (65.75%), Query Frame = 0


Query: 1   MPFTPSHSEEHLPSRLTAAAGMELARASASSSVM-IAHDERALQLAVPFFTHAILLDRAF 60
           +PFTPSHSEEHLP          ++R     S    A DERALQ A+PFFTHAILLDRAF
Sbjct: 142 VPFTPSHSEEHLPPPSYRGCWHGVSRGFFLESCHDRALDERALQAALPFFTHAILLDRAF 201

Query: 61  AHCPRFLTTTPVG 73
           AHCPRF T  P G
Sbjct: 202 AHCPRFPTAAPRG 214

[Close]

BLAST of MELO3C026409.2 vs. TrEMBL
Match: tr|A0A2P5S332|A0A2P5S332_GOSBA (Uncharacterized protein OS=Gossypium barbadense OX=3634 GN=GOBAR_DD09636 PE=4 SV=1)

HSP 1 Score: 82.4 bits (202), Expect = 5.1e-13
Identity = 46/72 (63.89%), Postives = 51/72 (70.83%), Query Frame = 0


Query: 2   PFTPSHSEEHLPSRLTAAAGMELARASASSSVMIAHDERAL-QLAVPFFTHAILLDRAFA 61
           P  P   +   P RLTAAAG ELA AS+SS VMIAH  + L + A+PFFTHAILLDRAFA
Sbjct: 181 PLRPVIPKNTCPPRLTAAAGTELAGASSSSPVMIAHSTKELYERALPFFTHAILLDRAFA 240

Query: 62  HCPRFLTTTPVG 73
           HCPRF T  P G
Sbjct: 241 HCPRFPTAAPRG 252

[Close]

BLAST of MELO3C026409.2 vs. TrEMBL
Match: tr|A0A2P5S000|A0A2P5S000_GOSBA (Uncharacterized protein OS=Gossypium barbadense OX=3634 GN=GOBAR_DD10686 PE=4 SV=1)

HSP 1 Score: 82.4 bits (202), Expect = 5.1e-13
Identity = 46/72 (63.89%), Postives = 51/72 (70.83%), Query Frame = 0


Query: 2   PFTPSHSEEHLPSRLTAAAGMELARASASSSVMIAHDERAL-QLAVPFFTHAILLDRAFA 61
           P  P   +   P RLTAAAG ELA AS+SS VMIAH  + L + A+PFFTHAILLDRAFA
Sbjct: 93  PLRPVIPKNTCPPRLTAAAGTELAGASSSSPVMIAHSTKELYERALPFFTHAILLDRAFA 152

Query: 62  HCPRFLTTTPVG 73
           HCPRF T  P G
Sbjct: 153 HCPRFPTAAPRG 164

[Close]

BLAST of MELO3C026409.2 vs. TrEMBL
Match: tr|A0A2P5SQD7|A0A2P5SQD7_GOSBA (Uncharacterized protein OS=Gossypium barbadense OX=3634 GN=GOBAR_DD01736 PE=4 SV=1)

HSP 1 Score: 82.4 bits (202), Expect = 5.1e-13
Identity = 46/72 (63.89%), Postives = 51/72 (70.83%), Query Frame = 0


Query: 2   PFTPSHSEEHLPSRLTAAAGMELARASASSSVMIAHDERAL-QLAVPFFTHAILLDRAFA 61
           P  P   +   P RLTAAAG ELA AS+SS VMIAH  + L + A+PFFTHAILLDRAFA
Sbjct: 102 PLRPVIPKNTCPPRLTAAAGTELAGASSSSPVMIAHSTKELYERALPFFTHAILLDRAFA 161

Query: 62  HCPRFLTTTPVG 73
           HCPRF T  P G
Sbjct: 162 HCPRFPTAAPRG 173

[Close]

BLAST of MELO3C026409.2 vs. TrEMBL
Match: tr|A0A2P5WD91|A0A2P5WD91_GOSBA (Uncharacterized protein OS=Gossypium barbadense OX=3634 GN=GOBAR_AA31647 PE=4 SV=1)

HSP 1 Score: 82.4 bits (202), Expect = 5.1e-13
Identity = 46/72 (63.89%), Postives = 51/72 (70.83%), Query Frame = 0


Query: 2   PFTPSHSEEHLPSRLTAAAGMELARASASSSVMIAHDERAL-QLAVPFFTHAILLDRAFA 61
           P  P   +   P RLTAAAG ELA AS+SS VMIAH  + L + A+PFFTHAILLDRAFA
Sbjct: 87  PLRPVIPKNTCPPRLTAAAGTELAGASSSSPVMIAHSTKELYERALPFFTHAILLDRAFA 146

Query: 62  HCPRFLTTTPVG 73
           HCPRF T  P G
Sbjct: 147 HCPRFPTAAPRG 158

[Close]

BLAST of MELO3C026409.2 vs. TrEMBL
Match: tr|A0A2J6MBX5|A0A2J6MBX5_LACSA (Uncharacterized protein OS=Lactuca sativa OX=4236 GN=LSAT_4X50261 PE=4 SV=1)

HSP 1 Score: 77.4 bits (189), Expect = 1.7e-11
Identity = 44/73 (60.27%), Postives = 48/73 (65.75%), Query Frame = 0


Query: 1   MPFTPSHSEEHLPSRLTAAAGMELARASASSSVM-IAHDERALQLAVPFFTHAILLDRAF 60
           +PFTPSHSEEHLP          ++R     S    A DERALQ A+PFFTHAILLDRAF
Sbjct: 246 VPFTPSHSEEHLPPPSYRGCWHGVSRGFFLESCHDRALDERALQAALPFFTHAILLDRAF 305

Query: 61  AHCPRFLTTTPVG 73
           AHCPRF T  P G
Sbjct: 306 AHCPRFPTAAPRG 318

The following BLAST results are available for this feature:

BLAST of MELO3C026409.2 vs. NCBI nr


Match Name	E-value	Identity	Description
PPD92383.1	7.8e-13	63.89	hypothetical protein GOBAR_DD10686 [Gossypium barbadense]	[more]
PPD93439.1	7.8e-13	63.89	hypothetical protein GOBAR_DD09636 [Gossypium barbadense]	[more]
PPE01242.1	7.8e-13	63.89	hypothetical protein GOBAR_DD01736 [Gossypium barbadense]	[more]
PPR89027.1	7.8e-13	63.89	hypothetical protein GOBAR_AA31647 [Gossypium barbadense]	[more]
PLY67130.1	2.5e-11	60.27	hypothetical protein LSAT_5X152921 [Lactuca sativa]	[more]

BLAST of MELO3C026409.2 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of MELO3C026409.2 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of MELO3C026409.2 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A2P5S332\|A0A2P5S332_GOSBA	5.1e-13	63.89	Uncharacterized protein OS=Gossypium barbadense OX=3634 GN=GOBAR_DD09636 PE=4 SV...	[more]
tr\|A0A2P5S000\|A0A2P5S000_GOSBA	5.1e-13	63.89	Uncharacterized protein OS=Gossypium barbadense OX=3634 GN=GOBAR_DD10686 PE=4 SV...	[more]
tr\|A0A2P5SQD7\|A0A2P5SQD7_GOSBA	5.1e-13	63.89	Uncharacterized protein OS=Gossypium barbadense OX=3634 GN=GOBAR_DD01736 PE=4 SV...	[more]
tr\|A0A2P5WD91\|A0A2P5WD91_GOSBA	5.1e-13	63.89	Uncharacterized protein OS=Gossypium barbadense OX=3634 GN=GOBAR_AA31647 PE=4 SV...	[more]
tr\|A0A2J6MBX5\|A0A2J6MBX5_LACSA	1.7e-11	60.27	Uncharacterized protein OS=Lactuca sativa OX=4236 GN=LSAT_4X50261 PE=4 SV=1	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C026409.2.1	MELO3C026409.2.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
MELO3C026409.2	Cucumber (Gy14) v1	cgymedB041
MELO3C026409.2	Cucurbita maxima (Rimu)	cmamedB035
MELO3C026409.2	Cucurbita maxima (Rimu)	cmamedB516
MELO3C026409.2	Cucurbita moschata (Rifu)	cmomedB025
MELO3C026409.2	Cucurbita moschata (Rifu)	cmomedB503
MELO3C026409.2	Cucurbita pepo (Zucchini)	cpemedB635
MELO3C026409.2	Cucurbita pepo (Zucchini)	cpemedB863
MELO3C026409.2	Silver-seed gourd	carmedB1024
MELO3C026409.2	Wax gourd	medwgoB602