MELO3C026409 (gene) Melon (DHL92) v3.5.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C026409
Type	gene
Organism	Cucumis melo (Melon (DHL92) v3.5.1)
Description	Glutamyl-tRNA reductase 1
Location	chr7 : 6203352 .. 6203600 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCCTTTTACGCCCAGCCATTCCGAAGAACACTTGCCCTCTCGTCTTACTGCAGCTGCTGGCATGGAGTTAGCTAGGGCTTCTGCCTCGAGTTCTGTTATGATCGCACACGACGAAAGAGCCTTACAATTGGCAGTGCCCTTCTTCACTCACGCGATATTATTGGATCGGGCTTTTGCCCATTGTCCAAGATTCCTTACTACTACCCCCGTGGGAGTCCGAGCCGTGTCTCAGTCCCAGTGTGGTTGA

mRNA sequence

ATGCCTTTTACGCCCAGCCATTCCGAAGAACACTTGCCCTCTCGTCTTACTGCAGCTGCTGGCATGGAGTTAGCTAGGGCTTCTGCCTCGAGTTCTGTTATGATCGCACACGACGAAAGAGCCTTACAATTGGCAGTGCCCTTCTTCACTCACGCGATATTATTGGATCGGGCTTTTGCCCATTGTCCAAGATTCCTTACTACTACCCCCGTGGGAGTCCGAGCCGTGTCTCAGTCCCAGTGTGGTTGA

Coding sequence (CDS)

ATGCCTTTTACGCCCAGCCATTCCGAAGAACACTTGCCCTCTCGTCTTACTGCAGCTGCTGGCATGGAGTTAGCTAGGGCTTCTGCCTCGAGTTCTGTTATGATCGCACACGACGAAAGAGCCTTACAATTGGCAGTGCCCTTCTTCACTCACGCGATATTATTGGATCGGGCTTTTGCCCATTGTCCAAGATTCCTTACTACTACCCCCGTGGGAGTCCGAGCCGTGTCTCAGTCCCAGTGTGGTTGA

Protein sequence

MPFTPSHSEEHLPSRLTAAAGMELARASASSSVMIAHDERALQLAVPFFTHAILLDRAFAHCPRFLTTTPVGVRAVSQSQCG*

Homology

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BLAST of MELO3C026409 vs. TrEMBL
Match: R4ITY7_VICFA (Uncharacterized protein OS=Vicia faba PE=4 SV=1)

HSP 1 Score: 63.9 bits (154), Expect = 1.0e-07
Identity = 30/37 (81.08%), Postives = 31/37 (83.78%), Query Frame = 1


Query: 36 AHDERALQLAVPFFTHAILLDRAFAHCPRFLTTTPVG 73
          A DERALQ A+PFFTHAILLDRAFAHCPRF T  P G
Sbjct: 26 ALDERALQAALPFFTHAILLDRAFAHCPRFPTAAPRG 62

[Close]

BLAST of MELO3C026409 vs. TrEMBL
Match: A0A0C4B1C3_WHEAT (Uncharacterized protein OS=Triticum aestivum PE=4 SV=1)

HSP 1 Score: 63.9 bits (154), Expect = 1.0e-07
Identity = 30/37 (81.08%), Postives = 31/37 (83.78%), Query Frame = 1


Query: 36  AHDERALQLAVPFFTHAILLDRAFAHCPRFLTTTPVG 73
           A DERALQ A+PFFTHAILLDRAFAHCPRF T  P G
Sbjct: 100 ALDERALQAALPFFTHAILLDRAFAHCPRFPTAAPRG 136

[Close]

BLAST of MELO3C026409 vs. TrEMBL
Match: A0A0C4BFM4_WHEAT (Uncharacterized protein OS=Triticum aestivum PE=4 SV=1)

HSP 1 Score: 63.5 bits (153), Expect = 1.4e-07
Identity = 29/35 (82.86%), Postives = 30/35 (85.71%), Query Frame = 1


Query: 38  DERALQLAVPFFTHAILLDRAFAHCPRFLTTTPVG 73
           DERALQ A+PFFTHAILLDRAFAHCPRF T  P G
Sbjct: 102 DERALQAALPFFTHAILLDRAFAHCPRFPTAAPRG 136

[Close]

BLAST of MELO3C026409 vs. TrEMBL
Match: A0A0C4B3M8_WHEAT (Uncharacterized protein OS=Triticum aestivum PE=4 SV=1)

HSP 1 Score: 62.0 bits (149), Expect = 3.9e-07
Identity = 29/37 (78.38%), Postives = 31/37 (83.78%), Query Frame = 1


Query: 36  AHDERALQLAVPFFTHAILLDRAFAHCPRFLTTTPVG 73
           A +ERALQ A+PFFTHAILLDRAFAHCPRF T  P G
Sbjct: 102 ALNERALQAALPFFTHAILLDRAFAHCPRFPTAAPRG 138

[Close]

BLAST of MELO3C026409 vs. TrEMBL
Match: K4CTA5_SOLLC (Uncharacterized protein OS=Solanum lycopersicum PE=4 SV=1)

HSP 1 Score: 58.2 bits (139), Expect = 5.7e-06
Identity = 27/37 (72.97%), Postives = 30/37 (81.08%), Query Frame = 1


Query: 36  AHDERALQLAVPFFTHAILLDRAFAHCPRFLTTTPVG 73
           A DERALQ A+PFFTHAI L R+FAHCPRF T +P G
Sbjct: 162 ALDERALQEALPFFTHAIFLGRSFAHCPRFPTASPHG 198

[Close]

BLAST of MELO3C026409 vs. NCBI nr
Match: gi|442803210|gb|AGC78945.1| (hypothetical protein (mitochondrion) [Vicia faba])

HSP 1 Score: 63.9 bits (154), Expect = 1.5e-07
Identity = 30/37 (81.08%), Postives = 31/37 (83.78%), Query Frame = 1


Query: 36 AHDERALQLAVPFFTHAILLDRAFAHCPRFLTTTPVG 73
          A DERALQ A+PFFTHAILLDRAFAHCPRF T  P G
Sbjct: 26 ALDERALQAALPFFTHAILLDRAFAHCPRFPTAAPRG 62

The following BLAST results are available for this feature:

BLAST of MELO3C026409 vs. TrEMBL


Match Name	E-value	Identity	Description
R4ITY7_VICFA	1.0e-07	81.08	Uncharacterized protein OS=Vicia faba PE=4 SV=1	[more]
A0A0C4B1C3_WHEAT	1.0e-07	81.08	Uncharacterized protein OS=Triticum aestivum PE=4 SV=1	[more]
A0A0C4BFM4_WHEAT	1.4e-07	82.86	Uncharacterized protein OS=Triticum aestivum PE=4 SV=1	[more]
A0A0C4B3M8_WHEAT	3.9e-07	78.38	Uncharacterized protein OS=Triticum aestivum PE=4 SV=1	[more]
K4CTA5_SOLLC	5.7e-06	72.97	Uncharacterized protein OS=Solanum lycopersicum PE=4 SV=1	[more]

BLAST of MELO3C026409 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|442803210\|gb\|AGC78945.1\|	1.5e-07	81.08	hypothetical protein (mitochondrion) [Vicia faba]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005739	mitochondrion
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C026409T1	MELO3C026409T1	mRNA

InterPro

Analysis Name: InterPro Annotations of melon
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR38146	FAMILY NOT NAMED	coord: 36..70 score: 2.0
None	No IPR available	PANTHER	PTHR38146:SF1	SUBFAMILY NOT NAMED	coord: 36..70 score: 2.0

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
MELO3C026409	Silver-seed gourd	carmeB1012
MELO3C026409	Wax gourd	mewgoB596
MELO3C026409	Cucumber (Gy14) v1	cgymeB041
MELO3C026409	Cucurbita maxima (Rimu)	cmameB036
MELO3C026409	Cucurbita maxima (Rimu)	cmameB448
MELO3C026409	Cucurbita moschata (Rifu)	cmomeB025
MELO3C026409	Cucurbita moschata (Rifu)	cmomeB439
MELO3C026409	Cucurbita pepo (Zucchini)	cpemeB535
MELO3C026409	Cucurbita pepo (Zucchini)	cpemeB730