MELO3C026397 (gene) Melon (DHL92) v3.5.1

Overview
NameMELO3C026397
Typegene
OrganismCucumis melo (Melon (DHL92) v3.5.1)
DescriptionSatellite RNA 48 kDa protein
Locationchr7 : 6007363 .. 6007816 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGATTACGGTTGTGACCGGTGGTTCTCGTAGAATCTTTGAGCATTGTCATAAATTTATTTTATCGCACAAGAAATTTTGCTATTTCCACGACGACGACATACGAACTCCGGCGACCGACGCCTTGACGACATTACCCACACTGCAAACGCCCGCATTTGAGATGCGTTCCCTCCCCGGGCCACGCGCGACACCCACGCTGATACATGCTGAGCTTTCTACTCCGGTGATTACTCGCCAACAGGTTTTGACTCACAAATCTGATTTGCATCGCGAGCACGGCTTCACATCATCAGCGTTCTTGGTTGCGAGTTGCAAATTTCAAATCGACGAACAGAGAAGGCGTTGTTTCGTCTCTAGAGAGTTCGACAAAGTTCAGTTCTAGAGATGAAATTCAATGTCAGGTCAATTGGGGAGAAGGGAAGCTATGTCGTTACTCAAAATTTAAGAATTTC

mRNA sequence

ATGATTACGGTTGTGACCGGTGGTTCTCGTAGAATCTTTGAGCATTGTCATAAATTTATTTTATCGCACAAGAAATTTTGCTATTTCCACGACGACGACATACGAACTCCGGCGACCGACGCCTTGACGACATTACCCACACTGCAAACGCCCGCATTTGAGATGCGTTCCCTCCCCGGGCCACGCGCGACACCCACGCTGATACATGCTGAGCTTTCTACTCCGGTGATTACTCGCCAACAGGTTTTGACTCACAAATCTGATTTGCATCGCGAGCACGGCTTCACATCATCAGCGTTCTTGGTTGCGAGTTGCAAATTTCAAATCGACGAACAGAGAAGGCGTTGTTTCGTCTCTAGAGAGTTCGACAAAGTTCAGTTCTAGAGATGAAATTCAATGTCAGGTCAATTGGGGAGAAGGGAAGCTATGTCGTTACTCAAAATTTAAGAATTTC

Coding sequence (CDS)

ATGATTACGGTTGTGACCGGTGGTTCTCGTAGAATCTTTGAGCATTGTCATAAATTTATTTTATCGCACAAGAAATTTTGCTATTTCCACGACGACGACATACGAACTCCGGCGACCGACGCCTTGACGACATTACCCACACTGCAAACGCCCGCATTTGAGATGCGTTCCCTCCCCGGGCCACGCGCGACACCCACGCTGATACATGCTGAGCTTTCTACTCCGGTGATTACTCGCCAACAGGTTTTGACTCACAAATCTGATTTGCATCGCGAGCACGGCTTCACATCATCAGCGTTCTTGGTTGCGAGTTGCAAATTTCAAATCGACGAACAGAGAAGGCGTTGTTTCGTCTCTAGAGAGTTCGACAAAGTTCAGTTCTAG

Protein sequence

MITVVTGGSRRIFEHCHKFILSHKKFCYFHDDDIRTPATDALTTLPTLQTPAFEMRSLPGPRATPTLIHAELSTPVITRQQVLTHKSDLHREHGFTSSAFLVASCKFQIDEQRRRCFVSREFDKVQF*
Homology
[Close]
BLAST of MELO3C026397 vs. TrEMBL
Match: A0A0A0KZ81_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G617370 PE=4 SV=1)

HSP 1 Score: 85.5 bits (210), Expect = 5.1e-14
Identity = 48/74 (64.86%), Postives = 52/74 (70.27%), Query Frame = 1 

Query: 55  MRSLPGPRATPTLIHAELSTPVITRQQVLTHKSDLHREHGFTSSAFL-VASCK--FQIDE 114
           MRSLPGPRATPT I A   +PVI  QQVLTHKSDLH E  F     + V  CK  FQ  E
Sbjct: 1   MRSLPGPRATPTQIDAVRYSPVINCQQVLTHKSDLHLEPDFERLRIISVLGCKLQFQARE 60

Query: 115 QRRRCFVSREFDKV 126
           QRRRCFVS+EFDK+
Sbjct: 61  QRRRCFVSKEFDKL 74

[Close]
BLAST of MELO3C026397 vs. NCBI nr
Match: gi|700199812|gb|KGN54970.1| (hypothetical protein Csa_4G617370 [Cucumis sativus])

HSP 1 Score: 85.5 bits (210), Expect = 7.4e-14
Identity = 48/74 (64.86%), Postives = 52/74 (70.27%), Query Frame = 1 

Query: 55  MRSLPGPRATPTLIHAELSTPVITRQQVLTHKSDLHREHGFTSSAFL-VASCK--FQIDE 114
           MRSLPGPRATPT I A   +PVI  QQVLTHKSDLH E  F     + V  CK  FQ  E
Sbjct: 1   MRSLPGPRATPTQIDAVRYSPVINCQQVLTHKSDLHLEPDFERLRIISVLGCKLQFQARE 60

Query: 115 QRRRCFVSREFDKV 126
           QRRRCFVS+EFDK+
Sbjct: 61  QRRRCFVSKEFDKL 74

The following BLAST results are available for this feature:
BLAST of MELO3C026397 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KZ81_CUCSA5.1e-1464.86Uncharacterized protein OS=Cucumis sativus GN=Csa_4G617370 PE=4 SV=1[more]
BLAST of MELO3C026397 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700199812|gb|KGN54970.1|7.4e-1464.86hypothetical protein Csa_4G617370 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C026397T1MELO3C026397T1mRNA