MELO3C026355 (gene) Melon (DHL92) v3.5.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C026355
Type	gene
Organism	Cucumis melo (Melon (DHL92) v3.5.1)
Description	30S ribosomal protein S8
Location	chr7 : 5519169 .. 5519489 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATTAGTAGATTGTGTATCATGTATATACGTTTTCAAATTCATAACTATTTAATAAAAAAGAATGTTGATTAGATCAAAATTGAAAGTCACCAATAATTTTCGTTTATCATGGGTAAGGACACTATTACTAACATAATAACCTCTATTCGTAATGCTGACATGAATAGAAAAGGAATGGTTCAAATACCATCTACTAACATCACCGAAAACATTGTGAAAAGACTTTTACGAGAAGGTTTTATTGAAAACTTAAGGAAACATTGGGAAAACAACAAGGATTTTTAGGTTTGAACCCTACAACATAGAAGAAATAGGAAAGGA

mRNA sequence

ATTAGTAGATTGTGTATCATGTATATACGTTTTCAAATTCATAACTATTTAATAAAAAAGAATGTTGATTAGATCAAAATTGAAAGTCACCAATAATTTTCGTTTATCATGGGTAAGGACACTATTACTAACATAATAACCTCTATTCGTAATGCTGACATGAATAGAAAAGGAATGGTTCAAATACCATCTACTAACATCACCGAAAACATTGTGAAAAGACTTTTACGAGAAGGTTTTATTGAAAACTTAAGGAAACATTGGGAAAACAACAAGGATTTTTAGGTTTGAACCCTACAACATAGAAGAAATAGGAAAGGA

Coding sequence (CDS)

ATGGGTAAGGACACTATTACTAACATAATAACCTCTATTCGTAATGCTGACATGAATAGAAAAGGAATGGTTCAAATACCATCTACTAACATCACCGAAAACATTGTGAAAAGACTTTTACGAGAAGGTTTTATTGAAAACTTAAGGAAACATTGGGAAAACAACAAGGATTTTTAG

Protein sequence

MGKDTITNIITSIRNADMNRKGMVQIPSTNITENIVKRLLREGFIENLRKHWENNKDF*

Homology

[Close]

BLAST of MELO3C026355 vs. Swiss-Prot
Match: RR8_CUCSA (30S ribosomal protein S8, chloroplastic OS=Cucumis sativus GN=rps8 PE=3 SV=1)

HSP 1 Score: 104.4 bits (259), Expect = 4.4e-22
Identity = 51/58 (87.93%), Postives = 54/58 (93.10%), Query Frame = 1


Query: 1  MGKDTITNIITSIRNADMNRKGMVQIPSTNITENIVKRLLREGFIENLRKHWENNKDF 59
          MGKDTI NIITSIRNADMNRKGMV+IP+TNITENIVK LLREGFIEN+RKH E+NKDF
Sbjct: 1  MGKDTIANIITSIRNADMNRKGMVRIPATNITENIVKILLREGFIENVRKHRESNKDF 58

[Close]

BLAST of MELO3C026355 vs. Swiss-Prot
Match: RR8_PHAAN (30S ribosomal protein S8, chloroplastic OS=Phaseolus angularis GN=rps8 PE=3 SV=1)

HSP 1 Score: 96.7 bits (239), Expect = 9.2e-20
Identity = 47/58 (81.03%), Postives = 49/58 (84.48%), Query Frame = 1


Query: 1  MGKDTITNIITSIRNADMNRKGMVQIPSTNITENIVKRLLREGFIENLRKHWENNKDF 59
          MGKDTI NIIT IRNADMN+KGMVQ+P TNITE IVK LLREGF+EN+RKH ENNK F
Sbjct: 1  MGKDTIANIITYIRNADMNKKGMVQLPFTNITEKIVKILLREGFVENIRKHRENNKYF 58

[Close]

BLAST of MELO3C026355 vs. Swiss-Prot
Match: RR8_NYMAL (30S ribosomal protein S8, chloroplastic OS=Nymphaea alba GN=rps8 PE=3 SV=1)

HSP 1 Score: 96.7 bits (239), Expect = 9.2e-20
Identity = 47/58 (81.03%), Postives = 51/58 (87.93%), Query Frame = 1


Query: 1  MGKDTITNIITSIRNADMNRKGMVQIPSTNITENIVKRLLREGFIENLRKHWENNKDF 59
          MG+DTI +IIT IRNADM++KG V+IPSTNITENIVK LLREGFIEN+RKH ENNKDF
Sbjct: 1  MGRDTIADIITYIRNADMDKKGTVRIPSTNITENIVKILLREGFIENVRKHRENNKDF 58

[Close]

BLAST of MELO3C026355 vs. Swiss-Prot
Match: RR8_EUCGG (30S ribosomal protein S8, chloroplastic OS=Eucalyptus globulus subsp. globulus GN=rps8 PE=3 SV=1)

HSP 1 Score: 95.5 bits (236), Expect = 2.1e-19
Identity = 47/58 (81.03%), Postives = 51/58 (87.93%), Query Frame = 1


Query: 1  MGKDTITNIITSIRNADMNRKGMVQIPSTNITENIVKRLLREGFIENLRKHWENNKDF 59
          MG+DTI +IITSIRNADMNRKG +QI STNITENIVK LLREGFI+N+RKH ENNK F
Sbjct: 1  MGRDTIADIITSIRNADMNRKGTIQIASTNITENIVKILLREGFIKNVRKHQENNKYF 58

[Close]

BLAST of MELO3C026355 vs. Swiss-Prot
Match: RR8_SOYBN (30S ribosomal protein S8, chloroplastic OS=Glycine max GN=rps8 PE=3 SV=1)

HSP 1 Score: 95.5 bits (236), Expect = 2.1e-19
Identity = 47/58 (81.03%), Postives = 50/58 (86.21%), Query Frame = 1


Query: 1  MGKDTITNIITSIRNADMNRKGMVQIPSTNITENIVKRLLREGFIENLRKHWENNKDF 59
          MGKDTI +IIT IRNADMN+KGMVQIP TNITENIVK LLREGF+EN+RKH EN+K F
Sbjct: 1  MGKDTIADIITYIRNADMNKKGMVQIPFTNITENIVKILLREGFVENVRKHRENDKYF 58

[Close]

BLAST of MELO3C026355 vs. TrEMBL
Match: A0A109WXX2_GYNPE (30S ribosomal protein S8, chloroplastic OS=Gynostemma pentaphyllum GN=rps8 PE=3 SV=1)

HSP 1 Score: 107.8 bits (268), Expect = 4.5e-21
Identity = 53/58 (91.38%), Postives = 55/58 (94.83%), Query Frame = 1


Query: 1  MGKDTITNIITSIRNADMNRKGMVQIPSTNITENIVKRLLREGFIENLRKHWENNKDF 59
          MGKDTI NIITSIRNADMNRKGMV+IPSTNITENIVK LLREGFIEN+RKH ENNKDF
Sbjct: 1  MGKDTIANIITSIRNADMNRKGMVRIPSTNITENIVKILLREGFIENVRKHQENNKDF 58

[Close]

BLAST of MELO3C026355 vs. TrEMBL
Match: G3ETT3_CUCME (30S ribosomal protein S8, chloroplastic OS=Cucumis melo subsp. melo GN=rps8 PE=3 SV=1)

HSP 1 Score: 105.5 bits (262), Expect = 2.2e-20
Identity = 52/58 (89.66%), Postives = 55/58 (94.83%), Query Frame = 1


Query: 1  MGKDTITNIITSIRNADMNRKGMVQIPSTNITENIVKRLLREGFIENLRKHWENNKDF 59
          MGKDTI NIITSIRNADMNRKGMV+IPSTNITENIVK LLREGFIEN+RKH E+NKDF
Sbjct: 1  MGKDTIANIITSIRNADMNRKGMVRIPSTNITENIVKILLREGFIENVRKHRESNKDF 58

[Close]

BLAST of MELO3C026355 vs. TrEMBL
Match: X2F8R8_LAGSI (30S ribosomal protein S8, chloroplastic OS=Lagenaria siceraria GN=rps8 PE=3 SV=1)

HSP 1 Score: 105.5 bits (262), Expect = 2.2e-20
Identity = 52/58 (89.66%), Postives = 55/58 (94.83%), Query Frame = 1


Query: 1  MGKDTITNIITSIRNADMNRKGMVQIPSTNITENIVKRLLREGFIENLRKHWENNKDF 59
          MGKDTI NIITSIRNADMNRKGMV+IPSTNITENIVK LLREGFIEN+RKH E+NKDF
Sbjct: 1  MGKDTIANIITSIRNADMNRKGMVRIPSTNITENIVKILLREGFIENVRKHRESNKDF 58

[Close]

BLAST of MELO3C026355 vs. TrEMBL
Match: X2F824_LAGSI (30S ribosomal protein S8, chloroplastic OS=Lagenaria siceraria GN=rps8 PE=3 SV=1)

HSP 1 Score: 105.5 bits (262), Expect = 2.2e-20
Identity = 52/58 (89.66%), Postives = 55/58 (94.83%), Query Frame = 1


Query: 1  MGKDTITNIITSIRNADMNRKGMVQIPSTNITENIVKRLLREGFIENLRKHWENNKDF 59
          MGKDTI NIITSIRNADMNRKGMV+IPSTNITENIVK LLREGFIEN+RKH E+NKDF
Sbjct: 1  MGKDTIANIITSIRNADMNRKGMVRIPSTNITENIVKILLREGFIENVRKHRESNKDF 58

[Close]

BLAST of MELO3C026355 vs. TrEMBL
Match: X2F6H3_LAGSI (30S ribosomal protein S8, chloroplastic OS=Lagenaria siceraria GN=rps8 PE=3 SV=1)

HSP 1 Score: 105.5 bits (262), Expect = 2.2e-20
Identity = 52/58 (89.66%), Postives = 55/58 (94.83%), Query Frame = 1


Query: 1  MGKDTITNIITSIRNADMNRKGMVQIPSTNITENIVKRLLREGFIENLRKHWENNKDF 59
          MGKDTI NIITSIRNADMNRKGMV+IPSTNITENIVK LLREGFIEN+RKH E+NKDF
Sbjct: 1  MGKDTIANIITSIRNADMNRKGMVRIPSTNITENIVKILLREGFIENVRKHRESNKDF 58

[Close]

BLAST of MELO3C026355 vs. TAIR10
Match: ATCG00770.1 (ATCG00770.1 ribosomal protein S8)

HSP 1 Score: 92.8 bits (229), Expect = 7.5e-20
Identity = 47/58 (81.03%), Postives = 51/58 (87.93%), Query Frame = 1


Query: 1  MGKDTITNIITSIRNADMNRKGMVQIPSTNITENIVKRLLREGFIENLRKHWENNKDF 59
          MGKDTI +IITSIRNADMNRKG V+I STNITE+IVK LLREGFIEN+RKH ENN+ F
Sbjct: 1  MGKDTIADIITSIRNADMNRKGTVRIGSTNITESIVKILLREGFIENVRKHRENNQYF 58

[Close]

BLAST of MELO3C026355 vs. NCBI nr
Match: gi|1002166200|ref|YP_009236314.1| (ribosomal protein S8 (chloroplast) [Gynostemma pentaphyllum])

HSP 1 Score: 107.8 bits (268), Expect = 6.4e-21
Identity = 53/58 (91.38%), Postives = 55/58 (94.83%), Query Frame = 1


Query: 1  MGKDTITNIITSIRNADMNRKGMVQIPSTNITENIVKRLLREGFIENLRKHWENNKDF 59
          MGKDTI NIITSIRNADMNRKGMV+IPSTNITENIVK LLREGFIEN+RKH ENNKDF
Sbjct: 1  MGKDTIANIITSIRNADMNRKGMVRIPSTNITENIVKILLREGFIENVRKHQENNKDF 58

[Close]

BLAST of MELO3C026355 vs. NCBI nr
Match: gi|595645250|gb|AHM88713.1| (ribosomal protein S8 (chloroplast) [Lagenaria siceraria])

HSP 1 Score: 105.5 bits (262), Expect = 3.2e-20
Identity = 52/58 (89.66%), Postives = 55/58 (94.83%), Query Frame = 1


Query: 1  MGKDTITNIITSIRNADMNRKGMVQIPSTNITENIVKRLLREGFIENLRKHWENNKDF 59
          MGKDTI NIITSIRNADMNRKGMV+IPSTNITENIVK LLREGFIEN+RKH E+NKDF
Sbjct: 1  MGKDTIANIITSIRNADMNRKGMVRIPSTNITENIVKILLREGFIENVRKHRESNKDF 58

[Close]

BLAST of MELO3C026355 vs. NCBI nr
Match: gi|346578227|ref|YP_004841819.1| (ribosomal protein S8 [Cucumis melo subsp. melo])

HSP 1 Score: 105.5 bits (262), Expect = 3.2e-20
Identity = 52/58 (89.66%), Postives = 55/58 (94.83%), Query Frame = 1


Query: 1  MGKDTITNIITSIRNADMNRKGMVQIPSTNITENIVKRLLREGFIENLRKHWENNKDF 59
          MGKDTI NIITSIRNADMNRKGMV+IPSTNITENIVK LLREGFIEN+RKH E+NKDF
Sbjct: 1  MGKDTIANIITSIRNADMNRKGMVRIPSTNITENIVKILLREGFIENVRKHRESNKDF 58

[Close]

BLAST of MELO3C026355 vs. NCBI nr
Match: gi|595647826|gb|AHM91246.1| (ribosomal protein S8 (chloroplast) [Lagenaria siceraria])

HSP 1 Score: 105.5 bits (262), Expect = 3.2e-20
Identity = 52/58 (89.66%), Postives = 55/58 (94.83%), Query Frame = 1


Query: 1  MGKDTITNIITSIRNADMNRKGMVQIPSTNITENIVKRLLREGFIENLRKHWENNKDF 59
          MGKDTI NIITSIRNADMNRKGMV+IPSTNITENIVK LLREGFIEN+RKH E+NKDF
Sbjct: 1  MGKDTIANIITSIRNADMNRKGMVRIPSTNITENIVKILLREGFIENVRKHRESNKDF 58

[Close]

BLAST of MELO3C026355 vs. NCBI nr
Match: gi|595647587|gb|AHM91011.1| (ribosomal protein S8 (chloroplast) [Lagenaria siceraria])

HSP 1 Score: 105.5 bits (262), Expect = 3.2e-20
Identity = 52/58 (89.66%), Postives = 55/58 (94.83%), Query Frame = 1


Query: 1  MGKDTITNIITSIRNADMNRKGMVQIPSTNITENIVKRLLREGFIENLRKHWENNKDF 59
          MGKDTI NIITSIRNADMNRKGMV+IPSTNITENIVK LLREGFIEN+RKH E+NKDF
Sbjct: 1  MGKDTIANIITSIRNADMNRKGMVRIPSTNITENIVKILLREGFIENVRKHRESNKDF 58

The following BLAST results are available for this feature:

BLAST of MELO3C026355 vs. Swiss-Prot


Match Name	E-value	Identity	Description
RR8_CUCSA	4.4e-22	87.93	30S ribosomal protein S8, chloroplastic OS=Cucumis sativus GN=rps8 PE=3 SV=1	[more]
RR8_PHAAN	9.2e-20	81.03	30S ribosomal protein S8, chloroplastic OS=Phaseolus angularis GN=rps8 PE=3 SV=1	[more]
RR8_NYMAL	9.2e-20	81.03	30S ribosomal protein S8, chloroplastic OS=Nymphaea alba GN=rps8 PE=3 SV=1	[more]
RR8_EUCGG	2.1e-19	81.03	30S ribosomal protein S8, chloroplastic OS=Eucalyptus globulus subsp. globulus G...	[more]
RR8_SOYBN	2.1e-19	81.03	30S ribosomal protein S8, chloroplastic OS=Glycine max GN=rps8 PE=3 SV=1	[more]

BLAST of MELO3C026355 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A109WXX2_GYNPE	4.5e-21	91.38	30S ribosomal protein S8, chloroplastic OS=Gynostemma pentaphyllum GN=rps8 PE=3 ...	[more]
G3ETT3_CUCME	2.2e-20	89.66	30S ribosomal protein S8, chloroplastic OS=Cucumis melo subsp. melo GN=rps8 PE=3...	[more]
X2F8R8_LAGSI	2.2e-20	89.66	30S ribosomal protein S8, chloroplastic OS=Lagenaria siceraria GN=rps8 PE=3 SV=1	[more]
X2F824_LAGSI	2.2e-20	89.66	30S ribosomal protein S8, chloroplastic OS=Lagenaria siceraria GN=rps8 PE=3 SV=1	[more]
X2F6H3_LAGSI	2.2e-20	89.66	30S ribosomal protein S8, chloroplastic OS=Lagenaria siceraria GN=rps8 PE=3 SV=1	[more]

BLAST of MELO3C026355 vs. TAIR10


Match Name	E-value	Identity	Description
ATCG00770.1	7.5e-20	81.03	ATCG00770.1 ribosomal protein S8	[more]

BLAST of MELO3C026355 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|1002166200\|ref\|YP_009236314.1\|	6.4e-21	91.38	ribosomal protein S8 (chloroplast) [Gynostemma pentaphyllum]	[more]
gi\|595645250\|gb\|AHM88713.1\|	3.2e-20	89.66	ribosomal protein S8 (chloroplast) [Lagenaria siceraria]	[more]
gi\|346578227\|ref\|YP_004841819.1\|	3.2e-20	89.66	ribosomal protein S8 [Cucumis melo subsp. melo]	[more]
gi\|595647826\|gb\|AHM91246.1\|	3.2e-20	89.66	ribosomal protein S8 (chloroplast) [Lagenaria siceraria]	[more]
gi\|595647587\|gb\|AHM91011.1\|	3.2e-20	89.66	ribosomal protein S8 (chloroplast) [Lagenaria siceraria]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR000630	Ribosomal_S8

Vocabulary: **Molecular Function**
Term	Definition
GO:0003735	structural constituent of ribosome

Vocabulary: **Cellular Component**
Term	Definition
GO:0005840	ribosome

Vocabulary: **Biological Process**
Term	Definition
GO:0006412	translation

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0042254	ribosome biogenesis
biological_process	GO:0006412	translation
cellular_component	GO:0009507	chloroplast
cellular_component	GO:0005840	ribosome
molecular_function	GO:0019843	rRNA binding
molecular_function	GO:0003735	structural constituent of ribosome

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C026355T1	MELO3C026355T1	mRNA

InterPro

Analysis Name: InterPro Annotations of melon
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000630	Ribosomal protein S8	PANTHER	PTHR11758	40S RIBOSOMAL PROTEIN S15A	coord: 1..51 score: 3.1
IPR000630	Ribosomal protein S8	PFAM	PF00410	Ribosomal_S8	coord: 4..54 score: 2.3
IPR000630	Ribosomal protein S8	unknown	SSF56047	Ribosomal protein S8	coord: 1..57 score: 5.36
None	No IPR available	GENE3D	G3DSA:3.30.1370.30		coord: 1..57 score: 1.2

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
MELO3C026355	Watermelon (97103) v2	mewmbB475
MELO3C026355	Wax gourd	mewgoB596
MELO3C026355	Cucumber (Gy14) v1	cgymeB041
MELO3C026355	Cucurbita maxima (Rimu)	cmameB036
MELO3C026355	Cucurbita maxima (Rimu)	cmameB438
MELO3C026355	Cucurbita moschata (Rifu)	cmomeB025
MELO3C026355	Cucurbita moschata (Rifu)	cmomeB428
MELO3C026355	Wild cucumber (PI 183967)	cpimeB316
MELO3C026355	Watermelon (Charleston Gray)	mewcgB465
MELO3C026355	Watermelon (97103) v1	mewmB547
MELO3C026355	Cucurbita pepo (Zucchini)	cpemeB542
MELO3C026355	Cucurbita pepo (Zucchini)	cpemeB730
MELO3C026355	Bottle gourd (USVL1VR-Ls)	lsimeB327
MELO3C026355	Cucumber (Gy14) v2	cgybmeB275
MELO3C026355	Silver-seed gourd	carmeB0314
MELO3C026355	Silver-seed gourd	carmeB0632
MELO3C026355	Cucumber (Chinese Long) v3	cucmeB321