MELO3C026336 (gene) Melon (DHL92) v3.5.1

Overview
NameMELO3C026336
Typegene
OrganismCucumis melo (Melon (DHL92) v3.5.1)
DescriptionS-adenosylmethionine synthase
Locationchr8 : 28614466 .. 28615249 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAATATAAGACAAATAGCTCTAACACTAGCAACAAGTGATGTATTCAAGAATGGGGATCCAAAGAAGATGACAAATCTTGGAAGCTTCACTATACCCTGCTATATAGGCAGTATGGATCTTGGTCGCGCACTATGCGACCTTAGAGCAAGTATCAACCTGAGGTTGCTCTTTGTTTTCAAGAACTTGGGGATTGGGAAGGTAAAACCTACTACAGTTGCGCTCCACTTGGTTGACATATCCATTGTGCAGCCTAAGGGAAGGATTGAGAATGCGTTAGTTAAGGTGGACAAGTTCATATTTCCCACAAACTTCATCATTTTGGACTATGAAGCTGATCGGGAGGTACTCATAGTTTTAGGACGACCATTATTCCCTACATGTTGAACCCTAATTGATGTCCACTAAGGAGAATTGACAATGTGGGTTAACAACCAAGAAGTAACATTTAAAGTCATTGACGCGTTGAAATTTCCCCAAAGATATAGAGAAATGCAGTTCAATTGAATCCTTAGGATGAGATAATTGTAAGGAAGAAGTCATTGTTGAGTTATTTAGCTCTGAAGAATTCATCAAAGAGTGCCCTAAAGACATTTTGGAGGAAGTGAACGTCGTGTCTGACGTGAGAAAGTTCGAGCCTCTCAATCTGCAAAATAAAGGTGATAAAAAGATAAAGCCATCATTTGAGAAGCAACCAGAATTAGAGCTCAAGCCATTACCAACCAACCTGAAATATGCATATTTGGGGAGAATGACACTTTTATTATCACCTTTGCCCACTTGA

mRNA sequence

ATGAATATAAGACAAATAGCTCTAACACTAGCAACAAGTGATGTATTCAAGAATGGGGATCCAAAGAAGATGACAAATCTTGGAAGCTTCACTATACCCTGCTATATAGGCAGTATGGATCTTGGTCGCGCACTATGCGACCTTAGAGCAAGTATCAACCTGAGGTTGCTCTTTGTTTTCAAGAACTTGGGGATTGGGAAGGTAAAACCTACTACAGTTGCGCTCCACTTGGTTGACATATCCATTGTGCAGCCTAAGGGAAGGATTGAGAATGCGTTAGTTAAGGTGGACAAGTTCATATTTCCCACAAACTTCATCATTTTGGACTATGAAGCTGATCGGGAGGAAGAAGTCATTGTTGAGTTATTTAGCTCTGAAGAATTCATCAAAGAGTGCCCTAAAGACATTTTGGAGGAAGTGAACGTCGTGTCTGACGTGAGAAAGTTCGAGCCTCTCAATCTGCAAAATAAAGGTGATAAAAAGATAAAGCCATCATTTGAGAAGCAACCAGAATTAGAGCTCAAGCCATTACCAACCAACCTGAAATATGCATATTTGGGGAGAATGACACTTTTATTATCACCTTTGCCCACTTGA

Coding sequence (CDS)

ATGAATATAAGACAAATAGCTCTAACACTAGCAACAAGTGATGTATTCAAGAATGGGGATCCAAAGAAGATGACAAATCTTGGAAGCTTCACTATACCCTGCTATATAGGCAGTATGGATCTTGGTCGCGCACTATGCGACCTTAGAGCAAGTATCAACCTGAGGTTGCTCTTTGTTTTCAAGAACTTGGGGATTGGGAAGGTAAAACCTACTACAGTTGCGCTCCACTTGGTTGACATATCCATTGTGCAGCCTAAGGGAAGGATTGAGAATGCGTTAGTTAAGGTGGACAAGTTCATATTTCCCACAAACTTCATCATTTTGGACTATGAAGCTGATCGGGAGGAAGAAGTCATTGTTGAGTTATTTAGCTCTGAAGAATTCATCAAAGAGTGCCCTAAAGACATTTTGGAGGAAGTGAACGTCGTGTCTGACGTGAGAAAGTTCGAGCCTCTCAATCTGCAAAATAAAGGTGATAAAAAGATAAAGCCATCATTTGAGAAGCAACCAGAATTAGAGCTCAAGCCATTACCAACCAACCTGAAATATGCATATTTGGGGAGAATGACACTTTTATTATCACCTTTGCCCACTTGA

Protein sequence

MNIRQIALTLATSDVFKNGDPKKMTNLGSFTIPCYIGSMDLGRALCDLRASINLRLLFVFKNLGIGKVKPTTVALHLVDISIVQPKGRIENALVKVDKFIFPTNFIILDYEADREEEVIVELFSSEEFIKECPKDILEEVNVVSDVRKFEPLNLQNKGDKKIKPSFEKQPELELKPLPTNLKYAYLGRMTLLLSPLPT*
Homology
[Close]
BLAST of MELO3C026336 vs. TrEMBL
Match: A0A0S3QWS7_PHAAN (Uncharacterized protein OS=Vigna angularis var. angularis GN=Vigan.01G023800 PE=4 SV=1)

HSP 1 Score: 119.8 bits (299), Expect = 3.8e-24
Identity = 60/115 (52.17%), Postives = 80/115 (69.57%), Query Frame = 1 

Query: 6   IALTLATSDVFKNGDPKKMTNLGSFTIPCYIGSMDLGRALCDLRASINLRLLFVFKNLGI 65
           I LT   S + +   P K+ + GSF IPC IG++ +G+ALCDL ASINL  L +FK LGI
Sbjct: 109 IMLTEECSAIIQQKLPPKLKDPGSFVIPCEIGNITVGKALCDLGASINLMPLSIFKRLGI 168

Query: 66  GKVKPTTVALHLVDISIVQPKGRIENALVKVDKFIFPTNFIILDYEADREEEVIV 121
           G+VKPT + L L D S+  P G +E+ LVKVDKFIFPT+F++LD E D +  +I+
Sbjct: 169 GEVKPTMITLQLADRSMTYPYGIVEDVLVKVDKFIFPTDFVVLDMEEDAKVPIIL 223

[Close]
BLAST of MELO3C026336 vs. TrEMBL
Match: A5AZ88_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_037041 PE=4 SV=1)

HSP 1 Score: 116.7 bits (291), Expect = 3.2e-23
Identity = 59/120 (49.17%), Postives = 80/120 (66.67%), Query Frame = 1 

Query: 1   MNIRQIALTLATSDVFKNGDPKKMTNLGSFTIPCYIGSMDLGRALCDLRASINLRLLFVF 60
           M+  ++ LT   S + +   P K+ + GSFTIPC IG  D  + LCDL  S+NL  L +F
Sbjct: 325 MDNEKVMLTEECSAILQRELPPKLKDPGSFTIPCTIGDFDFDKVLCDLGESVNLMPLSIF 384

Query: 61  KNLGIGKVKPTTVALHLVDISIVQPKGRIENALVKVDKFIFPTNFIILDYEADREEEVIV 120
           + LG+G+VK TTV L L D SI  P+G IE+ LVKVDKF+FP +FI+LD E DR+  +I+
Sbjct: 385 RKLGLGEVKLTTVCLQLADRSIKHPRGIIEDVLVKVDKFLFPIDFIVLDMEEDRDVPLIL 444

[Close]
BLAST of MELO3C026336 vs. TrEMBL
Match: A0A151SV10_CAJCA (Retrovirus-related Pol polyprotein from transposon opus OS=Cajanus cajan GN=KK1_014042 PE=4 SV=1)

HSP 1 Score: 115.9 bits (289), Expect = 5.5e-23
Identity = 58/113 (51.33%), Postives = 77/113 (68.14%), Query Frame = 1 

Query: 8   LTLATSDVFKNGDPKKMTNLGSFTIPCYIGSMDLGRALCDLRASINLRLLFVFKNLGIGK 67
           LT   S + +   P K+ + GSF IPC IG++ + +ALCDL ASINL  L +FK LGIG+
Sbjct: 2   LTEECSAIIQQKLPPKLKDPGSFVIPCEIGNLMVSKALCDLGASINLMPLSIFKRLGIGE 61

Query: 68  VKPTTVALHLVDISIVQPKGRIENALVKVDKFIFPTNFIILDYEADREEEVIV 121
           VKPT + L L D S+  P G +E+ LVKVDKFIFP NF++LD E D +  +I+
Sbjct: 62  VKPTMITLQLADRSVTCPYGVVEDVLVKVDKFIFPANFVVLDMEEDAKVPIIL 114

[Close]
BLAST of MELO3C026336 vs. TrEMBL
Match: A5AJR6_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_000458 PE=4 SV=1)

HSP 1 Score: 109.8 bits (273), Expect = 4.0e-21
Identity = 76/210 (36.19%), Postives = 112/210 (53.33%), Query Frame = 1 

Query: 1   MNIRQIA-LTLATSDVFKNGDPKKMTNLGSFTIPCYIGSMDLGRALCDLRASINLRLLFV 60
           +N+ + A LT   S + +   P K  +LG  TI   IG   + +AL DL A++NL    V
Sbjct: 409 LNVNKKAFLTEQVSAIIQCKSPVKYKDLGCPTISVSIGGTYVEKALLDLGATVNLLPYSV 468

Query: 61  FKNLGIGKVKPTTVALHLVDISIVQPKGRIENALVKVDKFIFPTNFIILD--------YE 120
           +K LG+G++KPT++ L L D S+  P+G IE  LV+VDKF +P +F++LD         E
Sbjct: 469 YKQLGLGELKPTSITLSLADRSMKIPRGMIEYVLVQVDKFYYPVDFVVLDTDPHIHLKEE 528

Query: 121 ADREEEVIVELFSSEEFIKECPKDILEE---------------VNVVSDVRKFEPLNLQN 180
            D EE   ++    E   K    D++E                  ++S  R+ E L L N
Sbjct: 529 EDPEEVYRIDALVEEHCDKRMQHDLIESFGDLDEGLLEPSDLLATLLSWRRREEILPLFN 588

Query: 181 KGDKKIKPSFEKQPELELKPLPTNLKYAYL 187
           + + + +P  E+ P+L LKPLPT LKYAYL
Sbjct: 589 EEEMQ-RPIKEEHPKLILKPLPTELKYAYL 617

[Close]
BLAST of MELO3C026336 vs. TrEMBL
Match: A5CB98_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_035143 PE=4 SV=1)

HSP 1 Score: 107.1 bits (266), Expect = 2.6e-20
Identity = 70/191 (36.65%), Postives = 112/191 (58.64%), Query Frame = 1 

Query: 1   MNIRQIA-LTLATSDVFKNGDPKKMTNLGSFTIPCYIGSMDLGRALCDLRASINLRLLFV 60
           +N+ + A LT   S + +   P K  +    TI   IG   + +AL DL AS+NL    V
Sbjct: 400 LNVNKKAFLTEQVSXIIRCKSPVKYKDPSCLTISMSIGGTCVEKALLDLGASVNLLPYSV 459

Query: 61  FKNLGIGKVKPTTVALHLVDISIVQPKGRIENALVKVDKFIFPTNFIILDYEADREEEVI 120
           +K LG+G++KPT++ L  VD S+   +G I+N LV+VDKF +P +F++LD +   +E++I
Sbjct: 460 YKQLGLGELKPTSITLSSVDKSVKISRGMIKNVLVQVDKFYYPVDFVVLDMDPRMQEDLI 519

Query: 121 VELFSSEEFIKECPKDILEEVNVVSDV----RKFEPLNLQNKGDKKIKPSFEKQPELELK 180
                 EE + E  + +LE ++ ++ +    R+ E L L N+ + + +   E+ P+L LK
Sbjct: 520 ESFGDLEEGLLE--EGLLEPLDFLATLLPWRRREEILPLFNEEETQ-RLVKEEPPKLILK 579

Query: 181 PLPTNLKYAYL 187
           PLP  LKYAYL
Sbjct: 580 PLPIELKYAYL 587

[Close]
BLAST of MELO3C026336 vs. NCBI nr
Match: gi|823251178|ref|XP_012458193.1| (PREDICTED: uncharacterized protein LOC105778985 [Gossypium raimondii])

HSP 1 Score: 141.4 bits (355), Expect = 1.8e-30
Identity = 85/211 (40.28%), Postives = 120/211 (56.87%), Query Frame = 1 

Query: 6   IALTLATSDVFKNGDPKKMTNLGSFTIPCYIGSMDLGRALCDLRASINLRLLFVFKNLGI 65
           +ALT   + +  N  P K     SFTI C IG+  +G+ALCDL ASI+L L+ +++NLGI
Sbjct: 24  VALTEGCTTILMNKLPPKRKGPMSFTISCSIGNHYVGKALCDLGASIDLMLMSIYRNLGI 83

Query: 66  GKVKPTTVALHLVDISIVQPKGRIENALVKVDKFIFPTNFIILDYEADREEEVI------ 125
           GK + T V L L D S    KG+IE+ LV+VDKFIFP +F++L++EAD+   +I      
Sbjct: 84  GKTRLTMVTLQLADRSYAHLKGKIEDVLVRVDKFIFPVDFLVLEFEADQNVPIIHGRPFL 143

Query: 126 -VELFSSEEFIKEC------PKDILEEVNVV----------------SDVRKFEPLNLQN 185
             E    EEF + C       K++LE ++ V                   +KF+ L+L +
Sbjct: 144 ATETKVEEEFNRICHNNSDNNKELLERIDEVRFKELGEFMEAKQTLERPGKKFDSLDLSS 203

Query: 186 KGDKKIKPSFEKQPELELKPLPTNLKYAYLG 188
              +  +PS E+ P LELKPLP +LKY YLG
Sbjct: 204 HSFRPPRPSVEEPPTLELKPLPQHLKYEYLG 234

[Close]
BLAST of MELO3C026336 vs. NCBI nr
Match: gi|743776598|ref|XP_010918710.1| (PREDICTED: uncharacterized protein LOC105043014 [Elaeis guineensis])

HSP 1 Score: 138.7 bits (348), Expect = 1.1e-29
Identity = 84/190 (44.21%), Postives = 117/190 (61.58%), Query Frame = 1 

Query: 6   IALTLATSDVFKNGDPKKMTNLGSFTIPCYIGSMDLGRALCDLRASINLRLLFVFKNLGI 65
           + LT   S + +N  P K+ + GSFTIPC IG+++  +ALCDL ASINL  L +F+ LG+
Sbjct: 77  VMLTEECSAIIQNKLPSKLKDPGSFTIPCNIGNIEFTKALCDLGASINLMPLSIFRKLGL 136

Query: 66  GKVKPTTVALHLVDISIVQPKGRIENALVKVDKFIFPTNFIILDYEADREEEVIVE---L 125
           G VKPT+V+L L D S+   KG +E+ LVKVDKFIFP NFIILD E DRE  +I+    L
Sbjct: 137 GDVKPTSVSLQLADRSVTYLKGIVEDVLVKVDKFIFPVNFIILDMEEDREVPLILGRPFL 196

Query: 126 FSSEEFIKECPKDIL------EEVNVVSDVRKFEPLNLQNKGDKKIKPSFEKQPELELKP 185
            + +  I      +       E V+V++DV K +          + KP+    P+LELK 
Sbjct: 197 ATGKALIDVYEGKLTLRVGQEEHVDVLNDVEKIQ-------DSVEAKPN----PKLELKQ 255

Query: 186 LPTNLKYAYL 187
           LP++L+YA+L
Sbjct: 257 LPSHLRYAFL 255

[Close]
BLAST of MELO3C026336 vs. NCBI nr
Match: gi|697127759|ref|XP_009617926.1| (PREDICTED: uncharacterized protein LOC104110187 [Nicotiana tomentosiformis])

HSP 1 Score: 132.9 bits (333), Expect = 6.3e-28
Identity = 87/218 (39.91%), Postives = 117/218 (53.67%), Query Frame = 1 

Query: 7   ALTLATSDVFKNGDPKKMTNLGSFTIPCYIGSMDLGRALCDLRASINLRLLFVFKNLGIG 66
           ALT   +   ++  P+K+  LGSFTIP  IG +D+GRALCDL ASINL  L VFK LG+G
Sbjct: 57  ALTEECTSRIQHKLPQKLKILGSFTIPVGIGEIDMGRALCDLGASINLMTLSVFKQLGLG 116

Query: 67  KVKPTTVALHLVDISIVQPKGRIENALVKVDKFIFPTNFIILDYEADREEEVIVELFSSE 126
             +PTTV L L D S V P+G IE+ L+ + KFIFP +FIILDYEAD       EL   +
Sbjct: 117 APRPTTVLLKLADRSYVYPEGVIEDVLLHIGKFIFPADFIILDYEAD-------ELVPGD 176

Query: 127 EFIKECPKDILEEVNVVSDVRK-----FEPLNLQNKGDKKI------------------- 186
             IK   ++++E      D  +     F  L L+ + ++ +                   
Sbjct: 177 AIIK--VREVVEPSAFKEDALEKALMLFNHLELEEEDEEMLQILNASCEYIRERYQFEPL 236

Query: 187 --------KPSFEKQPELELKPLPTNLKYAYLGRMTLL 193
                   +PS E+ P+LELKPL ++L YAY G    L
Sbjct: 237 DRPIGLPPRPSVEEAPKLELKPLQSHLHYAYFGSSNTL 265

[Close]
BLAST of MELO3C026336 vs. NCBI nr
Match: gi|659130345|ref|XP_008465121.1| (PREDICTED: uncharacterized protein LOC103502805 [Cucumis melo])

HSP 1 Score: 132.5 bits (332), Expect = 8.2e-28
Identity = 67/114 (58.77%), Postives = 85/114 (74.56%), Query Frame = 1 

Query: 6   IALTLATSDVFKNGDPKKMTNLGSFTIPCYIGSMDLGRALCDLRASINLRLLFVFKNLGI 65
           +ALTL TSD+ KNG PKKMT+  SFT+PC I +MDLG  LCDL ASINL  L +FK L I
Sbjct: 13  VALTLETSDILKNGAPKKMTDCRSFTVPCSINNMDLGHVLCDLGASINLMPLSIFKKLEI 72

Query: 66  GKVKPTTVALHLVDISIVQPKGRIENALVKVDKFIFPTNFIILDYEADREEEVI 120
            +V+P  + L  VD SI + +G+IE+ LVKVDKF+F  +FIILDYEA++E  +I
Sbjct: 73  EEVQPMHMRLQFVDRSIAKHEGKIEDILVKVDKFLFHADFIILDYEANQEVPII 126

[Close]
BLAST of MELO3C026336 vs. NCBI nr
Match: gi|985447976|ref|XP_015385565.1| (PREDICTED: uncharacterized protein LOC107176917 [Citrus sinensis])

HSP 1 Score: 131.0 bits (328), Expect = 2.4e-27
Identity = 65/115 (56.52%), Postives = 85/115 (73.91%), Query Frame = 1 

Query: 6   IALTLATSDVFKNGDPKKMTNLGSFTIPCYIGSMDLGRALCDLRASINLRLLFVFKNLGI 65
           +ALT  +S + ++  P K+ + GSFTIPC IG+   GR LCDL ASINL  L VFK LG+
Sbjct: 24  VALTKESSHMLQSKIPTKLKDPGSFTIPCSIGTRYTGRTLCDLGASINLMPLSVFKQLGV 83

Query: 66  GKVKPTTVALHLVDISIVQPKGRIENALVKVDKFIFPTNFIILDYEADREEEVIV 121
           G+ +PTTV L L DIS   P+G+IE+ LVKVDKFIFP +FI+LD+EAD+E  +I+
Sbjct: 84  GECRPTTVTLQLADISHAYPQGKIEDVLVKVDKFIFPVDFIVLDFEADKEVPIIL 138

The following BLAST results are available for this feature:
BLAST of MELO3C026336 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0S3QWS7_PHAAN3.8e-2452.17Uncharacterized protein OS=Vigna angularis var. angularis GN=Vigan.01G023800 PE=... [more]
A5AZ88_VITVI3.2e-2349.17Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_037041 PE=4 SV=1[more]
A0A151SV10_CAJCA5.5e-2351.33Retrovirus-related Pol polyprotein from transposon opus OS=Cajanus cajan GN=KK1_... [more]
A5AJR6_VITVI4.0e-2136.19Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_000458 PE=4 SV=1[more]
A5CB98_VITVI2.6e-2036.65Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_035143 PE=4 SV=1[more]
BLAST of MELO3C026336 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|823251178|ref|XP_012458193.1|1.8e-3040.28PREDICTED: uncharacterized protein LOC105778985 [Gossypium raimondii][more]
gi|743776598|ref|XP_010918710.1|1.1e-2944.21PREDICTED: uncharacterized protein LOC105043014 [Elaeis guineensis][more]
gi|697127759|ref|XP_009617926.1|6.3e-2839.91PREDICTED: uncharacterized protein LOC104110187 [Nicotiana tomentosiformis][more]
gi|659130345|ref|XP_008465121.1|8.2e-2858.77PREDICTED: uncharacterized protein LOC103502805 [Cucumis melo][more]
gi|985447976|ref|XP_015385565.1|2.4e-2756.52PREDICTED: uncharacterized protein LOC107176917 [Citrus sinensis][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C026336T1MELO3C026336T1mRNA


InterPro
Analysis Name: InterPro Annotations of melon
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR33067FAMILY NOT NAMEDcoord: 21..119
score: 2.6
NoneNo IPR availablePANTHERPTHR33067:SF2SUBFAMILY NOT NAMEDcoord: 21..119
score: 2.6

Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
MELO3C026336Cucurbita pepo (Zucchini)cpemeB075
MELO3C026336Cucurbita pepo (Zucchini)cpemeB454
MELO3C026336Bottle gourd (USVL1VR-Ls)lsimeB155
MELO3C026336Cucumber (Gy14) v2cgybmeB289
MELO3C026336Silver-seed gourdcarmeB0479
MELO3C026336Silver-seed gourdcarmeB0530
MELO3C026336Cucumber (Chinese Long) v3cucmeB340
MELO3C026336Watermelon (97103) v2mewmbB545
MELO3C026336Wax gourdmewgoB659
MELO3C026336Cucumber (Gy14) v1cgymeB442
MELO3C026336Cucurbita maxima (Rimu)cmameB614
MELO3C026336Cucurbita maxima (Rimu)cmameB813
MELO3C026336Cucurbita moschata (Rifu)cmomeB604
MELO3C026336Cucurbita moschata (Rifu)cmomeB797
MELO3C026336Wild cucumber (PI 183967)cpimeB336
MELO3C026336Cucumber (Chinese Long) v2cumeB334
MELO3C026336Watermelon (Charleston Gray)mewcgB536
MELO3C026336Watermelon (97103) v1mewmB578