MELO3C026325 (gene) Melon (DHL92) v3.5.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C026325
Type	gene
Organism	Cucumis melo (Melon (DHL92) v3.5.1)
Description	Calcium-transporting ATPase
Location	chr8 : 28394608 .. 28395084 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTTCCCAAGAAGGATACGAGTCACCCGTTGAGCAAGTTGTTGAAGGGCCAACGATACGAGGACTTACTACACAACGATCTCCTTCCAAGCGACCCAAGACTAAGGCCTTGGCTACTAAAGATACAACCGACACTCACCTAGCCAACTTGGAGGAACTTTTTGAGGATGTGCAAAGTACGGTTGGTAGGTTGAGTGATGATTATGAGGGGCTAGTCCGAGAGAATGTCGAGATCAGTGCTGCTGCTAAAGAAATTATTAAGGAGATTGGACGATCATTTTGTAGAGACCTAAATGCTCTATCAAAAGATGTGGCCAACCTAAAGAAATTCGTAGAAGGGGAGATCTACGAATTACATAAGGAAGTTGAACGCATCTATTTTGAGTATAATACTCTCCGTGCCACTACAAATGGTCAAGTGTTGACCATGGCGCATTCATTGCGTAGGAACAAGGGCAAGTTACTCACGGCTTAA

mRNA sequence

ATGGCTTCCCAAGAAGGATACGAGTCACCCGTTGAGCAAGTTGTTGAAGGGCCAACGATACGAGGACTTACTACACAACGATCTCCTTCCAAGCGACCCAAGACTAAGGCCTTGGCTACTAAAGATACAACCGACACTCACCTAGCCAACTTGGAGGAACTTTTTGAGGATGTGCAAAGTACGGTTGGTAGGTTGAGTGATGATTATGAGGGGCTAGTCCGAGAGAATGTCGAGATCAGTGCTGCTGCTAAAGAAATTATTAAGGAGATTGGACGATCATTTTGTAGAGACCTAAATGCTCTATCAAAAGATGTGGCCAACCTAAAGAAATTCGTAGAAGGGGAGATCTACGAATTACATAAGGAAGTTGAACGCATCTATTTTGAGTATAATACTCTCCGTGCCACTACAAATGGTCAAGTGTTGACCATGGCGCATTCATTGCGTAGGAACAAGGGCAAGTTACTCACGGCTTAA

Coding sequence (CDS)

ATGGCTTCCCAAGAAGGATACGAGTCACCCGTTGAGCAAGTTGTTGAAGGGCCAACGATACGAGGACTTACTACACAACGATCTCCTTCCAAGCGACCCAAGACTAAGGCCTTGGCTACTAAAGATACAACCGACACTCACCTAGCCAACTTGGAGGAACTTTTTGAGGATGTGCAAAGTACGGTTGGTAGGTTGAGTGATGATTATGAGGGGCTAGTCCGAGAGAATGTCGAGATCAGTGCTGCTGCTAAAGAAATTATTAAGGAGATTGGACGATCATTTTGTAGAGACCTAAATGCTCTATCAAAAGATGTGGCCAACCTAAAGAAATTCGTAGAAGGGGAGATCTACGAATTACATAAGGAAGTTGAACGCATCTATTTTGAGTATAATACTCTCCGTGCCACTACAAATGGTCAAGTGTTGACCATGGCGCATTCATTGCGTAGGAACAAGGGCAAGTTACTCACGGCTTAA

Protein sequence

MASQEGYESPVEQVVEGPTIRGLTTQRSPSKRPKTKALATKDTTDTHLANLEELFEDVQSTVGRLSDDYEGLVRENVEISAAAKEIIKEIGRSFCRDLNALSKDVANLKKFVEGEIYELHKEVERIYFEYNTLRATTNGQVLTMAHSLRRNKGKLLTA*

Homology

[Close]

BLAST of MELO3C026325 vs. NCBI nr
Match: gi|659068885|ref|XP_008446938.1| (PREDICTED: uncharacterized protein LOC103489499 [Cucumis melo])

HSP 1 Score: 129.0 bits (323), Expect = 7.2e-27
Identity = 62/120 (51.67%), Postives = 88/120 (73.33%), Query Frame = 1


Query: 1   MASQEGYESPVEQVVEGPTIRGLTTQRSPSKRPKTKALATKDTTDTHLANLEELFEDVQS 60
           M+++EG+ SPVEQV+EGP  RG   Q SP++R K+K  A ++  DT L NLE+  EDVQ 
Sbjct: 1   MSAEEGHTSPVEQVIEGPVTRGRKEQHSPTRRSKSKGPAVREHVDTRLTNLEQGMEDVQL 60

Query: 61  TVGRLSDDYEGLVRENVEISAAAKEIIKEIGRSFCRDLNALSKDVANLKKFVEGEIYELH 120
            VGRLS+++E LV EN EI++ AKE+I+++GR+F ++L  L+  V  LK FVEGE++ LH
Sbjct: 61  AVGRLSENFEELVLENAEITSVAKEMIEDMGRTFQKELKELASTVTTLKAFVEGELHNLH 120

[Close]

BLAST of MELO3C026325 vs. NCBI nr
Match: gi|659083321|ref|XP_008442289.1| (PREDICTED: uncharacterized protein LOC103486198 [Cucumis melo])

HSP 1 Score: 125.2 bits (313), Expect = 1.0e-25
Identity = 60/120 (50.00%), Postives = 89/120 (74.17%), Query Frame = 1


Query: 1   MASQEGYESPVEQVVEGPTIRGLTTQRSPSKRPKTKALATKDTTDTHLANLEELFEDVQS 60
           M+++EG+ SPVEQV+EGP  RG   Q S ++R K+K  A ++  +T L NLE+  EDVQ 
Sbjct: 1   MSAEEGHTSPVEQVIEGPVTRGRKEQHSSTRRSKSKGPAVREHVNTRLTNLEQGMEDVQL 60

Query: 61  TVGRLSDDYEGLVRENVEISAAAKEIIKEIGRSFCRDLNALSKDVANLKKFVEGEIYELH 120
            VGRLSD++E LV+EN EI++ AKE+I+++GR+F ++L  L+  V  LK FVEGE+++L+
Sbjct: 61  AVGRLSDNFEELVQENAEITSVAKEMIEDMGRTFQKELKELASTVTTLKAFVEGELHDLY 120

[Close]

BLAST of MELO3C026325 vs. NCBI nr
Match: gi|659121350|ref|XP_008460615.1| (PREDICTED: uncharacterized protein LOC103499392 [Cucumis melo])

HSP 1 Score: 74.7 bits (182), Expect = 1.6e-10
Identity = 35/65 (53.85%), Postives = 50/65 (76.92%), Query Frame = 1


Query: 56  EDVQSTVGRLSDDYEGLVRENVEISAAAKEIIKEIGRSFCRDLNALSKDVANLKKFVEGE 115
           EDVQ  VGRLS+++E LV+EN EI++ AKE+I+++GR+F  +L  L+  V  LK FVEGE
Sbjct: 2   EDVQLAVGRLSENFEELVQENAEITSVAKEMIEDMGRTFQEELKELASTVTTLKAFVEGE 61

Query: 116 IYELH 121
           ++ LH
Sbjct: 62  LHNLH 66

The following BLAST results are available for this feature:

BLAST of MELO3C026325 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659068885\|ref\|XP_008446938.1\|	7.2e-27	51.67	PREDICTED: uncharacterized protein LOC103489499 [Cucumis melo]	[more]
gi\|659083321\|ref\|XP_008442289.1\|	1.0e-25	50.00	PREDICTED: uncharacterized protein LOC103486198 [Cucumis melo]	[more]
gi\|659121350\|ref\|XP_008460615.1\|	1.6e-10	53.85	PREDICTED: uncharacterized protein LOC103499392 [Cucumis melo]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C026325T1	MELO3C026325T1	mRNA

InterPro

Analysis Name: InterPro Annotations of melon
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	unknown	Coil	Coil	coord: 48..68 scor

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
MELO3C026325	Silver-seed gourd	carmeB0479
MELO3C026325	Silver-seed gourd	carmeB0530
MELO3C026325	Cucumber (Chinese Long) v3	cucmeB340
MELO3C026325	Watermelon (97103) v2	mewmbB545
MELO3C026325	Wax gourd	mewgoB659
MELO3C026325	Cucumber (Gy14) v1	cgymeB442
MELO3C026325	Cucurbita maxima (Rimu)	cmameB614
MELO3C026325	Cucurbita maxima (Rimu)	cmameB813
MELO3C026325	Cucurbita moschata (Rifu)	cmomeB604
MELO3C026325	Cucurbita moschata (Rifu)	cmomeB797
MELO3C026325	Wild cucumber (PI 183967)	cpimeB336
MELO3C026325	Cucumber (Chinese Long) v2	cumeB334
MELO3C026325	Watermelon (Charleston Gray)	mewcgB536
MELO3C026325	Watermelon (97103) v1	mewmB578
MELO3C026325	Cucurbita pepo (Zucchini)	cpemeB075
MELO3C026325	Cucurbita pepo (Zucchini)	cpemeB454
MELO3C026325	Cucumber (Gy14) v2	cgybmeB289