MELO3C026301.2 (gene) Melon (DHL92) v3.6.1

Overview
NameMELO3C026301.2
Typegene
OrganismCucumis melo (Melon (DHL92) v3.6.1)
Description6-phosphogluconate dehydrogenase, decarboxylating
Locationchr07 : 12182738 .. 12183055 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
AAGTATAGGCGTGCTAGGCTGCCTGCCAATCTTGTGAAGGCTCAAAGAGACTTATTTGAGGCTCATACATATGAGCGGGTGGATCGCCTAGACTCCTACCACACGGGGTGGACAAAGCTGGCTCGCAATGCTAATACTGGAGTTGGCATTTTCAACTTAGCTTTTGAGCTGCCTACCAATTTGGTTGGTTTTCTTTCTCTGCTTTGATTGGGTGCAAATGTCCTACTTGATTTTGCTTGCCCATTTCAAAAGTTGGTAAGTTTTCCTTTTTATATCACAATTTGGACAGTCTTCCATGCTTCTTAGGGGAGTAGATAG

mRNA sequence

AAGTATAGGCGTGCTAGGCTGCCTGCCAATCTTGTGAAGGCTCAAAGAGACTTATTTGAGGCTCATACATATGAGCGGGTGGATCGCCTAGACTCCTACCACACGGGGTGGACAAAGCTGGCTCGCAATGCTAATACTGGAGTTGGCATTTTCAACTTAGCTTTTGAGCTGCCTACCAATTTGGTTGGTTTTCTTTCTCTGCTTTGATTGGGTGCAAATGTCCTACTTGATTTTGCTTGCCCATTTCAAAAGTTGGTAAGTTTTCCTTTTTATATCACAATTTGGACAGTCTTCCATGCTTCTTAGGGGAGTAGATAG

Coding sequence (CDS)

AAGTATAGGCGTGCTAGGCTGCCTGCCAATCTTGTGAAGGCTCAAAGAGACTTATTTGAGGCTCATACATATGAGCGGGTGGATCGCCTAGACTCCTACCACACGGGGTGGACAAAGCTGGCTCGCAATGCTAATACTGGAGTTGGCATTTTCAACTTAGCTTTTGAGCTGCCTACCAATTTGGTTGGTTTTCTTTCTCTGCTTTGA

Protein sequence

KYRRARLPANLVKAQRDLFEAHTYERVDRLDSYHTGWTKLARNANTGVGIFNLAFELPTNLVGFLSLL
Homology
[Close]
BLAST of MELO3C026301.2 vs. NCBI nr
Match: XP_008451978.1 (PREDICTED: 6-phosphogluconate dehydrogenase, decarboxylating 2, chloroplastic [Cucumis melo])

HSP 1 Score: 92.8 bits (229), Expect = 4.8e-16
Identity = 44/51 (86.27%), Postives = 46/51 (90.20%), Query Frame = 0 

Query: 2   YRRARLPANLVKAQRDLFEAHTYERVDRLDSYHTGWTKLARNANTGVGIFN 53
           YRRARLPANLV+AQRDLF AHTYERVDR  SYHT WTKLARNA+ GVGIFN
Sbjct: 445 YRRARLPANLVQAQRDLFGAHTYERVDRQGSYHTEWTKLARNADAGVGIFN 495

[Close]
BLAST of MELO3C026301.2 vs. NCBI nr
Match: XP_011653205.1 (PREDICTED: 6-phosphogluconate dehydrogenase, decarboxylating 2, chloroplastic [Cucumis sativus] >KGN53379.1 6-phosphogluconate dehydrogenase, decarboxylating [Cucumis sativus])

HSP 1 Score: 90.9 bits (224), Expect = 1.8e-15
Identity = 43/51 (84.31%), Postives = 46/51 (90.20%), Query Frame = 0 

Query: 2   YRRARLPANLVKAQRDLFEAHTYERVDRLDSYHTGWTKLARNANTGVGIFN 53
           YRRARLPANLV+AQRDLF AHTYERVDR  SYHT WTKLAR+A+ GVGIFN
Sbjct: 445 YRRARLPANLVQAQRDLFGAHTYERVDRQGSYHTEWTKLARSADAGVGIFN 495

[Close]
BLAST of MELO3C026301.2 vs. NCBI nr
Match: ACF20291.1 (6-phosphogluconate dehydrogenase, partial [Cucumis sativus])

HSP 1 Score: 90.9 bits (224), Expect = 1.8e-15
Identity = 43/51 (84.31%), Postives = 46/51 (90.20%), Query Frame = 0 

Query: 2   YRRARLPANLVKAQRDLFEAHTYERVDRLDSYHTGWTKLARNANTGVGIFN 53
           YRRARLPANLV+AQRDLF AHTYERVDR  SYHT WTKLAR+A+ GVGIFN
Sbjct: 261 YRRARLPANLVQAQRDLFGAHTYERVDRQGSYHTEWTKLARSADAGVGIFN 311

[Close]
BLAST of MELO3C026301.2 vs. NCBI nr
Match: NP_001295849.1 (6-phosphogluconate dehydrogenase, decarboxylating 2, chloroplastic [Cucumis sativus] >ACM68927.1 6-phosphogluconate dehydrogenase [Cucumis sativus])

HSP 1 Score: 90.9 bits (224), Expect = 1.8e-15
Identity = 43/51 (84.31%), Postives = 46/51 (90.20%), Query Frame = 0 

Query: 2   YRRARLPANLVKAQRDLFEAHTYERVDRLDSYHTGWTKLARNANTGVGIFN 53
           YRRARLPANLV+AQRDLF AHTYERVDR  SYHT WTKLAR+A+ GVGIFN
Sbjct: 445 YRRARLPANLVQAQRDLFGAHTYERVDRQGSYHTEWTKLARSADAGVGIFN 495

[Close]
BLAST of MELO3C026301.2 vs. NCBI nr
Match: XP_021669703.1 (6-phosphogluconate dehydrogenase, decarboxylating 2, chloroplastic-like [Hevea brasiliensis])

HSP 1 Score: 87.8 bits (216), Expect = 1.5e-14
Identity = 41/51 (80.39%), Postives = 45/51 (88.24%), Query Frame = 0 

Query: 2   YRRARLPANLVKAQRDLFEAHTYERVDRLDSYHTGWTKLARNANTGVGIFN 53
           YRRARLPANLV+AQRDLF AHTYERVDR  S+HT WTKLAR +N+GVG FN
Sbjct: 445 YRRARLPANLVQAQRDLFGAHTYERVDRPGSFHTEWTKLARKSNSGVGAFN 495

[Close]
BLAST of MELO3C026301.2 vs. TAIR10
Match: AT5G41670.1 (6-phosphogluconate dehydrogenase family protein)

HSP 1 Score: 73.6 bits (179), Expect = 5.4e-14
Identity = 34/43 (79.07%), Postives = 37/43 (86.05%), Query Frame = 0 

Query: 2   YRRARLPANLVKAQRDLFEAHTYERVDRLDSYHTGWTKLARNA 45
           YRRARLPANLV+AQRDLF AHTYER DR  +YHT WTKLAR +
Sbjct: 444 YRRARLPANLVQAQRDLFGAHTYERTDRPGAYHTEWTKLARKS 486

[Close]
BLAST of MELO3C026301.2 vs. TAIR10
Match: AT1G64190.1 (6-phosphogluconate dehydrogenase family protein)

HSP 1 Score: 73.2 bits (178), Expect = 7.1e-14
Identity = 34/41 (82.93%), Postives = 36/41 (87.80%), Query Frame = 0 

Query: 2   YRRARLPANLVKAQRDLFEAHTYERVDRLDSYHTGWTKLAR 43
           YRRARLPANLV+AQRDLF AHTYER DR  +YHT WTKLAR
Sbjct: 444 YRRARLPANLVQAQRDLFGAHTYERTDRPGAYHTEWTKLAR 484

[Close]
BLAST of MELO3C026301.2 vs. TAIR10
Match: AT3G02360.2 (6-phosphogluconate dehydrogenase family protein)

HSP 1 Score: 62.8 bits (151), Expect = 9.6e-11
Identity = 29/43 (67.44%), Postives = 33/43 (76.74%), Query Frame = 0 

Query: 2   YRRARLPANLVKAQRDLFEAHTYERVDRLDSYHTGWTKLARNA 45
           YRR RLPANLV+AQRD F AHTYER D   S+HT W K+AR +
Sbjct: 442 YRRERLPANLVQAQRDYFGAHTYERTDVEGSFHTEWFKIARQS 484

[Close]
BLAST of MELO3C026301.2 vs. Swiss-Prot
Match: sp|Q9FFR3|6PGD2_ARATH (6-phosphogluconate dehydrogenase, decarboxylating 2, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=At5g41670 PE=1 SV=1)

HSP 1 Score: 73.6 bits (179), Expect = 9.8e-13
Identity = 34/43 (79.07%), Postives = 37/43 (86.05%), Query Frame = 0 

Query: 2   YRRARLPANLVKAQRDLFEAHTYERVDRLDSYHTGWTKLARNA 45
           YRRARLPANLV+AQRDLF AHTYER DR  +YHT WTKLAR +
Sbjct: 444 YRRARLPANLVQAQRDLFGAHTYERTDRPGAYHTEWTKLARKS 486

[Close]
BLAST of MELO3C026301.2 vs. Swiss-Prot
Match: sp|Q9SH69|6PGD1_ARATH (6-phosphogluconate dehydrogenase, decarboxylating 1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=At1g64190 PE=1 SV=1)

HSP 1 Score: 73.2 bits (178), Expect = 1.3e-12
Identity = 34/41 (82.93%), Postives = 36/41 (87.80%), Query Frame = 0 

Query: 2   YRRARLPANLVKAQRDLFEAHTYERVDRLDSYHTGWTKLAR 43
           YRRARLPANLV+AQRDLF AHTYER DR  +YHT WTKLAR
Sbjct: 444 YRRARLPANLVQAQRDLFGAHTYERTDRPGAYHTEWTKLAR 484

[Close]
BLAST of MELO3C026301.2 vs. Swiss-Prot
Match: sp|Q2R480|6PGD2_ORYSJ (6-phosphogluconate dehydrogenase, decarboxylating 2, chloroplastic OS=Oryza sativa subsp. japonica OX=39947 GN=G6PGH2 PE=2 SV=1)

HSP 1 Score: 72.0 bits (175), Expect = 2.8e-12
Identity = 32/44 (72.73%), Postives = 38/44 (86.36%), Query Frame = 0 

Query: 2   YRRARLPANLVKAQRDLFEAHTYERVDRLDSYHTGWTKLARNAN 46
           YR +RLPANL++AQRDLF AHTYER+DR  S+HT WTKLAR +N
Sbjct: 461 YRCSRLPANLIQAQRDLFGAHTYERIDRPGSFHTEWTKLARKSN 504

[Close]
BLAST of MELO3C026301.2 vs. Swiss-Prot
Match: sp|Q94KU2|6PGD2_SPIOL (6-phosphogluconate dehydrogenase, decarboxylating 2, chloroplastic OS=Spinacia oleracea OX=3562 GN=pgdP PE=1 SV=1)

HSP 1 Score: 71.6 bits (174), Expect = 3.7e-12
Identity = 34/47 (72.34%), Postives = 38/47 (80.85%), Query Frame = 0 

Query: 2   YRRARLPANLVKAQRDLFEAHTYERVDRLDSYHTGWTKLARNANTGV 49
           YRRARLPANLV+AQRD F AHTYERVD   SYHT W+KLAR ++  V
Sbjct: 486 YRRARLPANLVQAQRDYFGAHTYERVDLPGSYHTEWSKLARKSDPNV 532

[Close]
BLAST of MELO3C026301.2 vs. Swiss-Prot
Match: sp|Q9LI00|6PGD1_ORYSJ (6-phosphogluconate dehydrogenase, decarboxylating 1 OS=Oryza sativa subsp. japonica OX=39947 GN=G6PGH1 PE=2 SV=1)

HSP 1 Score: 65.1 bits (157), Expect = 3.5e-10
Identity = 31/43 (72.09%), Postives = 34/43 (79.07%), Query Frame = 0 

Query: 2   YRRARLPANLVKAQRDLFEAHTYERVDRLDSYHTGWTKLARNA 45
           YRR RLPANLV+AQRD F AHTYERVD   S+HT W K+AR A
Sbjct: 436 YRRDRLPANLVQAQRDYFGAHTYERVDMPGSFHTEWFKIARAA 478

[Close]
BLAST of MELO3C026301.2 vs. TrEMBL
Match: tr|A0A1S3BST6|A0A1S3BST6_CUCME (6-phosphogluconate dehydrogenase, decarboxylating OS=Cucumis melo OX=3656 GN=LOC103493120 PE=3 SV=1)

HSP 1 Score: 92.8 bits (229), Expect = 3.2e-16
Identity = 44/51 (86.27%), Postives = 46/51 (90.20%), Query Frame = 0 

Query: 2   YRRARLPANLVKAQRDLFEAHTYERVDRLDSYHTGWTKLARNANTGVGIFN 53
           YRRARLPANLV+AQRDLF AHTYERVDR  SYHT WTKLARNA+ GVGIFN
Sbjct: 445 YRRARLPANLVQAQRDLFGAHTYERVDRQGSYHTEWTKLARNADAGVGIFN 495

[Close]
BLAST of MELO3C026301.2 vs. TrEMBL
Match: tr|B3VTV3|B3VTV3_CUCSA (6-phosphogluconate dehydrogenase (Fragment) OS=Cucumis sativus OX=3659 PE=2 SV=1)

HSP 1 Score: 90.9 bits (224), Expect = 1.2e-15
Identity = 43/51 (84.31%), Postives = 46/51 (90.20%), Query Frame = 0 

Query: 2   YRRARLPANLVKAQRDLFEAHTYERVDRLDSYHTGWTKLARNANTGVGIFN 53
           YRRARLPANLV+AQRDLF AHTYERVDR  SYHT WTKLAR+A+ GVGIFN
Sbjct: 261 YRRARLPANLVQAQRDLFGAHTYERVDRQGSYHTEWTKLARSADAGVGIFN 311

[Close]
BLAST of MELO3C026301.2 vs. TrEMBL
Match: tr|B9VWD5|B9VWD5_CUCSA (6-phosphogluconate dehydrogenase, decarboxylating OS=Cucumis sativus OX=3659 GN=6PGDH PE=2 SV=1)

HSP 1 Score: 90.9 bits (224), Expect = 1.2e-15
Identity = 43/51 (84.31%), Postives = 46/51 (90.20%), Query Frame = 0 

Query: 2   YRRARLPANLVKAQRDLFEAHTYERVDRLDSYHTGWTKLARNANTGVGIFN 53
           YRRARLPANLV+AQRDLF AHTYERVDR  SYHT WTKLAR+A+ GVGIFN
Sbjct: 445 YRRARLPANLVQAQRDLFGAHTYERVDRQGSYHTEWTKLARSADAGVGIFN 495

[Close]
BLAST of MELO3C026301.2 vs. TrEMBL
Match: tr|A0A0A0KWX8|A0A0A0KWX8_CUCSA (6-phosphogluconate dehydrogenase, decarboxylating OS=Cucumis sativus OX=3659 GN=Csa_4G050830 PE=3 SV=1)

HSP 1 Score: 90.9 bits (224), Expect = 1.2e-15
Identity = 43/51 (84.31%), Postives = 46/51 (90.20%), Query Frame = 0 

Query: 2   YRRARLPANLVKAQRDLFEAHTYERVDRLDSYHTGWTKLARNANTGVGIFN 53
           YRRARLPANLV+AQRDLF AHTYERVDR  SYHT WTKLAR+A+ GVGIFN
Sbjct: 445 YRRARLPANLVQAQRDLFGAHTYERVDRQGSYHTEWTKLARSADAGVGIFN 495

[Close]
BLAST of MELO3C026301.2 vs. TrEMBL
Match: tr|B9RVA7|B9RVA7_RICCO (6-phosphogluconate dehydrogenase, decarboxylating OS=Ricinus communis OX=3988 GN=RCOM_0901440 PE=3 SV=1)

HSP 1 Score: 87.0 bits (214), Expect = 1.7e-14
Identity = 40/51 (78.43%), Postives = 44/51 (86.27%), Query Frame = 0 

Query: 2   YRRARLPANLVKAQRDLFEAHTYERVDRLDSYHTGWTKLARNANTGVGIFN 53
           YRRARLPANLV+AQRDLF AHTYER+DR  S+HT WTKLAR +N GVG FN
Sbjct: 445 YRRARLPANLVQAQRDLFGAHTYERIDRPGSFHTEWTKLARKSNAGVGAFN 495

The following BLAST results are available for this feature:
BLAST of MELO3C026301.2 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_008451978.14.8e-1686.27PREDICTED: 6-phosphogluconate dehydrogenase, decarboxylating 2, chloroplastic [C... [more]
XP_011653205.11.8e-1584.31PREDICTED: 6-phosphogluconate dehydrogenase, decarboxylating 2, chloroplastic [C... [more]
ACF20291.11.8e-1584.316-phosphogluconate dehydrogenase, partial [Cucumis sativus][more]
NP_001295849.11.8e-1584.316-phosphogluconate dehydrogenase, decarboxylating 2, chloroplastic [Cucumis sati... [more]
XP_021669703.11.5e-1480.396-phosphogluconate dehydrogenase, decarboxylating 2, chloroplastic-like [Hevea b... [more]
BLAST of MELO3C026301.2 vs. TAIR10
Match NameE-valueIdentityDescription
AT5G41670.15.4e-1479.076-phosphogluconate dehydrogenase family protein[more]
AT1G64190.17.1e-1482.936-phosphogluconate dehydrogenase family protein[more]
AT3G02360.29.6e-1167.446-phosphogluconate dehydrogenase family protein[more]
BLAST of MELO3C026301.2 vs. Swiss-Prot
Match NameE-valueIdentityDescription
sp|Q9FFR3|6PGD2_ARATH9.8e-1379.076-phosphogluconate dehydrogenase, decarboxylating 2, chloroplastic OS=Arabidopsi... [more]
sp|Q9SH69|6PGD1_ARATH1.3e-1282.936-phosphogluconate dehydrogenase, decarboxylating 1, chloroplastic OS=Arabidopsi... [more]
sp|Q2R480|6PGD2_ORYSJ2.8e-1272.736-phosphogluconate dehydrogenase, decarboxylating 2, chloroplastic OS=Oryza sati... [more]
sp|Q94KU2|6PGD2_SPIOL3.7e-1272.346-phosphogluconate dehydrogenase, decarboxylating 2, chloroplastic OS=Spinacia o... [more]
sp|Q9LI00|6PGD1_ORYSJ3.5e-1072.096-phosphogluconate dehydrogenase, decarboxylating 1 OS=Oryza sativa subsp. japon... [more]
BLAST of MELO3C026301.2 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A1S3BST6|A0A1S3BST6_CUCME3.2e-1686.276-phosphogluconate dehydrogenase, decarboxylating OS=Cucumis melo OX=3656 GN=LOC... [more]
tr|B3VTV3|B3VTV3_CUCSA1.2e-1584.316-phosphogluconate dehydrogenase (Fragment) OS=Cucumis sativus OX=3659 PE=2 SV=1[more]
tr|B9VWD5|B9VWD5_CUCSA1.2e-1584.316-phosphogluconate dehydrogenase, decarboxylating OS=Cucumis sativus OX=3659 GN=... [more]
tr|A0A0A0KWX8|A0A0A0KWX8_CUCSA1.2e-1584.316-phosphogluconate dehydrogenase, decarboxylating OS=Cucumis sativus OX=3659 GN=... [more]
tr|B9RVA7|B9RVA7_RICCO1.7e-1478.436-phosphogluconate dehydrogenase, decarboxylating OS=Ricinus communis OX=3988 GN... [more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Biological Process
TermDefinition
GO:0055114oxidation-reduction process
GO:0006098pentose-phosphate shunt
Vocabulary: Molecular Function
TermDefinition
GO:0004616phosphogluconate dehydrogenase (decarboxylating) activity
Vocabulary: INTERPRO
TermDefinition
IPR0089276-PGluconate_DH-like_C_sf
IPR0061146PGDH_C
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0019521 D-gluconate metabolic process
biological_process GO:0055114 oxidation-reduction process
biological_process GO:0006098 pentose-phosphate shunt
cellular_component GO:0005575 cellular_component
molecular_function GO:0016491 oxidoreductase activity
molecular_function GO:0004616 phosphogluconate dehydrogenase (decarboxylating) activity
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C026301.2.1MELO3C026301.2.1mRNA


InterPro
Analysis Name: InterPro Annotations of melon v3.6.1
Date Performed: 2018-09-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3DG3DSA:1.20.5.320coord: 7..39
e-value: 1.1E-14
score: 55.7
NoneNo IPR availablePANTHERPTHR11811:SF336-PHOSPHOGLUCONATE DEHYDROGENASE, DECARBOXYLATING 3coord: 2..44
NoneNo IPR availablePANTHERPTHR118116-PHOSPHOGLUCONATE DEHYDROGENASEcoord: 2..44
IPR0061146-phosphogluconate dehydrogenase, C-terminalPFAMPF003936PGDcoord: 2..37
e-value: 9.1E-11
score: 41.6
IPR0089276-phosphogluconate dehydrogenase-like, C-terminal domain superfamilySUPERFAMILYSSF481796-phosphogluconate dehydrogenase C-terminal domain-likecoord: 2..40

Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
MELO3C026301.2Cucurbita pepo (Zucchini)cpemedB570
MELO3C026301.2Cucurbita pepo (Zucchini)cpemedB641
MELO3C026301.2Cucurbita pepo (Zucchini)cpemedB700
MELO3C026301.2Wild cucumber (PI 183967)cpimedB071
MELO3C026301.2Wild cucumber (PI 183967)cpimedB304
MELO3C026301.2Cucumber (Chinese Long) v2cumedB073
MELO3C026301.2Cucumber (Chinese Long) v2cumedB300
MELO3C026301.2Melon (DHL92) v3.6.1medmedB073
MELO3C026301.2Bottle gourd (USVL1VR-Ls)lsimedB236
MELO3C026301.2Bottle gourd (USVL1VR-Ls)lsimedB466
MELO3C026301.2Watermelon (Charleston Gray)medwcgB483
MELO3C026301.2Watermelon (Charleston Gray)medwcgB468
MELO3C026301.2Watermelon (97103) v1medwmB502
MELO3C026301.2Watermelon (97103) v1medwmB521
MELO3C026301.2Silver-seed gourdcarmedB0712
MELO3C026301.2Cucumber (Chinese Long) v3cucmedB080
MELO3C026301.2Cucumber (Chinese Long) v3cucmedB310
MELO3C026301.2Watermelon (97103) v2medwmbB472
MELO3C026301.2Watermelon (97103) v2medwmbB486
MELO3C026301.2Wax gourdmedwgoB586
MELO3C026301.2Wax gourdmedwgoB598
MELO3C026301.2Cucumber (Gy14) v2cgybmedB067
MELO3C026301.2Cucumber (Gy14) v2cgybmedB269
MELO3C026301.2Cucumber (Gy14) v1cgymedB162
MELO3C026301.2Cucumber (Gy14) v1cgymedB302
MELO3C026301.2Cucurbita maxima (Rimu)cmamedB232
MELO3C026301.2Cucurbita maxima (Rimu)cmamedB280
MELO3C026301.2Cucurbita maxima (Rimu)cmamedB502
MELO3C026301.2Cucurbita moschata (Rifu)cmomedB216
MELO3C026301.2Cucurbita moschata (Rifu)cmomedB266
MELO3C026301.2Cucurbita moschata (Rifu)cmomedB490